Composition Of Fungal Assemblages Research Articles

Niche modelling predicts that soil fungi occupy a precarious climate in boreal forests

AbstractAimEfforts to predict the responses of soil fungal communities to climate change are hindered by limited information on how fungal niches are distributed across environmental hyperspace. We predict the climate sensitivity of North American soil fungal assemblage composition by modelling the ecological niches of several thousand fungal species.LocationOne hundred and thirteen sites in the United States and Canada spanning all biomes except tropical rain forest.Major Taxa StudiedFungi.Time Period2011–2018.MethodsWe combine internal transcribed spacer (ITS) sequences from two continental‐scale sampling networks in North America and cluster them into operational taxonomic units (OTUs) at 97% similarity. Using climate and soil data, we fit ecological niche models (ENMs) based on logistic ridge regression for all OTUs present in at least 10 sites (n = 8597). To describe the compositional turnover of soil fungal assemblages over climatic gradients, we introduce a novel niche‐based metric of climate sensitivity, the Sørensen climate sensitivity index. Finally, we map climate sensitivity across North America.ResultsENMs have a mean out‐of‐sample predictive accuracy of 73.8%, with temperature variables being strong predictors of fungal distributions. Soil fungal climate niches clump together across environmental space, which suggests common physiological limits and predicts abrupt changes in composition with respect to changes in climate. Soil fungi in North American climates are more likely to be limited by cold and dry conditions than by warm and wet conditions, and ectomycorrhizal fungi generally tolerate colder temperatures than saprotrophic fungi. Sørensen climate sensitivity exhibits a multimodal distribution across environmental space, with a peak in climates corresponding to boreal forests.Main ConclusionsThe boreal forest occupies an especially precarious region of environmental space for the composition of soil fungal assemblages in North America, as even small degrees of warming could trigger large compositional changes characterized mainly by an influx of warm‐adapted species.

Local Environmental Conditions Promote High Turnover Diversity of Benthic Deep-Sea Fungi in the Ross Sea (Antarctica).

Fungi are a ubiquitous component of marine systems, but their quantitative relevance, biodiversity and ecological role in benthic deep-sea ecosystems remain largely unexplored. In this study, we investigated fungal abundance, diversity and assemblage composition in two benthic deep-sea sites of the Ross Sea (Southern Ocean, Antarctica), characterized by different environmental conditions (i.e., temperature, salinity, trophic availability). Our results indicate that fungal abundance (estimated as the number of 18S rDNA copies g−1) varied by almost one order of magnitude between the two benthic sites, consistently with changes in sediment characteristics and trophic availability. The highest fungal richness (in terms of Amplicon Sequence Variants−ASVs) was encountered in the sediments characterized by the highest organic matter content, indicating potential control of trophic availability on fungal diversity. The composition of fungal assemblages was highly diverse between sites and within each site (similarity less than 10%), suggesting that differences in environmental and ecological characteristics occurring even at a small spatial scale can promote high turnover diversity. Overall, this study provides new insights on the factors influencing the abundance and diversity of benthic deep-sea fungi inhabiting the Ross Sea, and also paves the way for a better understanding of the potential responses of benthic deep-sea fungi inhabiting Antarctic ecosystems in light of current and future climate changes.

No Change Detected in Culturable Fungal Assemblages on Cave Walls in Eastern Canada with the Introduction of Pseudogymnoascus destructans

Studies of fungi in caves have become increasingly important with the advent of white-nose syndrome (WNS), a disease caused by the invasive fungus Pseudogymnoascus destructans (Pd) that has killed an estimated 6.5 million North American bats. We swabbed cave walls in New Brunswick, Canada, in 2012 and 2015 to determine whether the culturable fungal assemblage on cave walls changed after the introduction of Pd and subsequent decrease in hibernating bat populations. We also compared fungal assemblages on cave walls to previous studies on the fungal assemblages of arthropods and hibernating bats in the same sites. The fungal diversity of bats and cave walls was more similar than on arthropods. The diversity and composition of fungal assemblages on cave walls was significantly different among media types and sites but did not differ over time. Therefore, no change in the culturable fungal assemblage present on cave walls was detected with the introduction of Pd and subsequent disappearance of the hibernating bat population over a 3-year period. This suggests that fungi documented in caves in the region prior to the outbreak of Pd do not require regular transmission of spores by bats to maintain fungal diversity at these sites.

Organs, Cultivars, Soil, and Fruit Properties Affect Structure of Endophytic Mycobiota of Pinggu Peach Trees.

Pinggu peach (Prunus persica (L.)) has great economic and ecological value in north China. As a plant, the peach is naturally colonized by a variety of endophytic fungi, which are very important for tree growth and health. However, the mycobiota composition and their affecting factors of the peach trees are still unknown. In our study, the fungal communities in flowers, leaves, stems, and roots of the three cultivars (Dajiubao, Qingfeng, and Jingyan) of Pinggu peach trees and in the rhizosphere soils were investigated by both Illumina Miseq sequencing of ITS rDNA and traditional culturing methods. For organs, except for roots, flowers had the highest fungal richness and diversity, while the leaves had the lowest richness and diversity. Ascomycota and Basidiomycota were the most abundant phyla among samples. The fungal assemblage composition of each organ was distinctive. Fungal communities of the three cultivars also differed from each other. The fungal community structure significantly correlated with soil pH, soil K, fruit soluble solid content, and fruit titratable acidity with the redundancy analysis (RDA). Most isolated fungal strains can be found within high-throughput sequencing identified taxa. This study indicates that plant organs, the cultivars, the soil, and fruit properties may have profound effects on the endophytic fungal community structure associated with Pinggu peach trees. With this study, microbiota-mediated pathogen protection and fruit quality promotion associated with peach trees could be further studied.

Does evolutionary history determine specificity in broad ecological interactions?

Abstract Most species engage in broad interactions, in which they interact with multiple partner species. The evolutionary processes that generate such generalized interactions remain unknown, partly due to the difficulty in comparing their breadth. We argue that the interaction specificity of species involved in broad interactions evolves in three ways: (a) assemblage specialization, in which a species specializes on particular host species that contribute unique resources, yielding specialization on the entire host assemblage; (b) apparent generalism, in which a species specializes on one or few host species that contribute unique resources, but also associates with other host species that contribute functionally redundant resources; and (c) true generalism, in which a species associates with multiple hosts that overlap functionally, and that are geographically interchangeable based on opportunity for encounter, leading to frequent host switching. We performed a phylogenetically controlled analysis of data on mycorrhizal fungal associations for approximately 25% of the orchid subfamily Cypripedioideae to determine whether these plants have specialized on their mycorrhizal fungal communities, or whether they are true generalists. We also assessed the impact of environmental factors on these associations. Our results suggested strong support for apparent generalism, suggesting strong specialization on particular, dominant fungi and weak specialization on others. Large orchid clades associated with dominant fungal species, notably Tulasnella cystidiophora for genus Cypripedium, and T. cystidiophora and T. calospora for genus Paphiopedilum. Significant phylogenetic signal in fungal species richness per plant species, but not in the fungal phylogenetic diversity per plant species nor in the composition of fungal assemblages across orchid species suggested that plant phylogeny is an important determinant of fungal association. Mixed linear models showed that environment influenced specificity across plant species, and that observed differences were strongly driven by differences in sampling effort. Synthesis. We found evidence of specialization of plant species on dominant fungal species, and to a lesser extent on their close relatives. The strong dominance of particular fungal species in these associations suggests important ecological roles for them, while environmental gradients in specificity suggest strong environmental filtering of these interactions.

Benthic deep-sea fungi in submarine canyons of the Mediterranean Sea

Fungi are ubiquitous components of microbial assemblages in aquatic ecosystems, but their quantitative relevance, ecological role and diversity in benthic deep-sea ecosystems are still largely unknown. Here, we investigated patterns and drivers of benthic fungal abundance, biomass and diversity from 200 to 1000 m depth in three submarine canyons of the Mediterranean Sea (Tricase, Crotone and Squillace canyons). The Crotone and Squillace canyons, which are close to the coast and influenced by river inputs, showed significantly higher fungal abundance, biomass and diversity (as operational taxonomic units, OTUs) compared with the Tricase canyon that was far from the coast and without nearby estuaries. Fungal biomass, abundance and diversity increased with increasing concentrations of carbohydrates, which in deep-sea sediments include highly refractory organic compounds. Overall, a total of 1742 fungal OTUs, belonging to all fungal phyla known to date, were found and Ascomycota represented the dominant phylum. However, only 36% of the reads belonged to known genera. In particular, Tricase and Crotone canyons hosted the highest proportion of unknown fungal taxa, suggesting that deep-sea sediments can harbour a high number of novel fungal lineages. Our findings also reveal that fungal assemblage composition in the investigated canyons was influenced by trophic and thermohaline conditions, which may promote a high turnover diversity of benthic deep-sea fungal assemblages. Overall results reported here indicate that the submarine canyons of the Mediterranean Sea can represent hot-spots of abundant and highly diversified fungal assemblages and pave the way for a better understanding of the ecological role of fungi in the largest ecosystem on Earth.

Continental‐scale macrofungal assemblage patterns correlate with climate, soil carbon and nitrogen deposition

AbstractAimMacroecological scales of species compositional trends are well documented for a variety of plant and animal groups, but remain sparse for fungi, despite their ecological importance in carbon and nutrient cycling. It is, thus, essential to understand the composition of fungal assemblages across broad geographical scales and the underlying drivers. Our overall aim was to describe these patterns for fungi across two nutritional modes (saprotrophic and ectomycorrhizal). Furthermore, we aimed to elucidate the temporal component of fruiting patterns and to relate these to soil carbon and nitrogen deposition.LocationCentral and Northern Europe.MethodsA total of 4.9 million fungal fruit body observations throughout Europe, collected between 1970 and 2010, were analysed to determine the two main environmental and geographical gradients structuring fungal assemblages for two main nutritional modes, saprotrophic and ectomycorrhizal fungi.ResultsTwo main gradients explaining the geography of compositional patterns were identified, for each nutritional mode. Mean annual temperature (and related collinear, seasonal measures) correlated most strongly with the first gradient for both nutritional modes. Soil organic carbon was the highest correlate of the second compositional gradient for ectomycorrhizal fungi, suspected as an indicator of vegetation‐ and pH‐related covariates. In contrast, nitrogen deposition constituted a second gradient for saprotrophic fungi, likely a proxy for anthropogenic pollution. Compositional gradients and environmental conditions correlated similarly when the data were divided into two time intervals of 1970–1990 and 1991–2010. Evidence of compositional temporal change was highest with increasing elevation and latitude.Main conclusionsFungal assemblage patterns demonstrate clear biogeographical patterns that relate the nutritional modes to their main environmental correlates of temperature, soil organic carbon and nitrogen deposition. With respect to global change impacts, the highest rates of compositional change by time suggest targeting higher latitudes and elevations for a better understanding of fungal dynamics. We, finally, suggest further examination of the ranges and dispersal abilities of fungi to better assess responses to global change.

Patterns and drivers of fungal diversity along an altitudinal gradient on Mount Gongga, China

Fungi are essential components of soil microbial communities and have a crucial role in biogeochemical processes. Alpine regions are sensitive to climate change, and the importance of changes in fungal community composition along altitudinal gradients in alpine regions is hotly debated. We used 454 pyrosequencing approaches to investigate the fungal communities at 1600, 2300, 2800, 3000, and 3900 m above sea level along an altitudinal gradient on Mount Gongga. The results showed that Agaricomycetes, Sordariomycetes, and Tremellomycetes are the dominant classes at all sampling sites. Operational taxonomic unit richness decreased with increasing altitude, and the fungal communities were clustered into three groups that corresponded to altitudes of, i.e., 1600, 2300, and above 2800 m. The evenness of fungi was not significantly correlated with altitude, whereas beta diversities were significantly correlated with altitude. The distance-based redundancy analysis and Mantel test indicated that the composition of fungal assemblages was mostly driven by altitude and temperature. Our results indicated that ecological processes possibly related to altitude and temperature play an important role in structuring fungal biodiversity along the elevational gradient. Our results highlight that different microbes may respond differently to environmental gradients.

Assemblage composition of fungal wood-decay species has a major influence on how climate and wood quality modify decomposition.

The interactions among saprotrophic fungal species, as well as their interactions with environmental factors, may have a major influence on wood decay and carbon release in ecosystems. We studied the effect that decomposer diversity (species richness and assemblage composition) has on wood decomposition when the climatic variables and substrate quality vary simultaneously. We used two temperatures (16 and 21°C) and two humidity levels (70% and 90%) with two wood qualities (wood from managed and old-growth forests) of Pinus sylvestris. In a 9-month experiment, the effects of fungal diversity were tested using four wood-decaying fungi (Antrodia xantha, Dichomitus squalens, Fomitopsis pinicola and Gloeophyllum protractum) at assemblage levels of one, two and four species. Wood quality and assemblage composition affected the influence of climatic factors on decomposition rates. Fungal assemblage composition was found to be more important than fungal species richness, indicating that species-specific fungal traits are of paramount importance in driving decomposition. We conclude that models containing fungal wood-decay species (and wood-based carbon) need to take into account species-specific and assemblage composition-specific properties to improve predictive capacity in regard to decomposition-related carbon dynamics.

Spring stimulates leaf decomposition in moderately eutrophic streams

In forested headwater streams, decomposition of allochthonous organic matter is a fundamental process driven by aquatic microbes and invertebrate shredders. We examined how season and eutrophication affect leaf decomposition and the associated decomposer communities by immersing leaves of a late deciduous species (Quercus robur) in five streams in Portugal along a gradient of eutrophication in autumn and spring. We found hump-shaped relationships between leaf decomposition and total nitrogen and phosphorus in stream water in both seasons. Leaf decomposition and shredder biomass were higher during spring in streams with moderate levels of eutrophication. Fungal sporulation and biomass were stimulated at moderate levels of eutrophication and inhibited at low or high levels of eutrophication. Fungal assemblage composition shifted between seasons and along the gradient of eutrophication. Tricladium chaetocladium increased its contribution to total conidial production in spring, while Dimorphospora foliicola was dominant in the most eutrophic streams where Articulospora tetracladia was almost absent. Invertebrate shredders were the primary decomposers of leaves in streams with moderate levels of eutrophication, particularly in the warmest season. Although the presence of late deciduous plant species, such as oak, in the riparian corridors may help to mitigate food depletion to freshwater decomposers in spring, our results suggest that moderate eutrophication can accelerate decomposition further reducing litter standing stocks in the warmer seasons.

Fungal Biodiversity in the Alpine Tarfala Valley

Biological soil crusts (BSCs) are distributed worldwide in all semiarid and arid lands, where they play a determinant role in element cycling and soil development. Although much work has concentrated on BSC microbial communities, free-living fungi have been hitherto largely overlooked. The aim of this study was to examine the fungal biodiversity, by cultural-dependent and cultural-independent approaches, in thirteen samples of Arctic BSCs collected at different sites in the Alpine Tarfala Valley, located on the slopes of Kebnekaise, the highest mountain in northern Scandinavia. Isolated fungi were identified by both microscopic observation and molecular approaches. Data revealed that the fungal assemblage composition was homogeneous among the BSCs analyzed, with low biodiversity and the presence of a few dominant species; the majority of fungi isolated belonged to the Ascomycota, and Cryptococcus gilvescens and Pezoloma ericae were the most frequently-recorded species. Ecological considerations for the species involved and the implication of our findings for future fungal research in BSCs are put forward.

Human disturbance increases functional but not structural variability of stream fungal communities

Summary Temporal stability of ecosystem functions is often regulated by the same environmental factors that also shape diversity. Therefore, species diversity, ecosystem functions and their environmental regulators should be considered together to understand and predict the consequences of anthropogenic disturbances on ecosystems. We studied the influence of land‐use disturbance (agriculture) and a natural stressor (low pH due to specific geology) on the temporal variability (variability among successive years) of fungal decomposer communities and leaf decomposition rates in streams. We used next‐generation sequencing techniques (pyrosequencing) to determine the composition of fungal assemblages. Temporal variability of leaf decomposition was higher in human‐disturbed streams than in circumneutral reference or naturally acidic sites, whereas the latter two did not differ. Fungal operational taxonomic unit (OTU) richness and evenness were lower in human‐impacted sites than in circumneutral reference sites. However, there were no significant differences between stream types in the temporal variability of fungal community composition. Fungal OTU evenness was negatively and among‐year variability of water chemistry positively related to temporal variability in leaf decomposition. Partial regressions showed that these two factors had independent effects on decomposition rates. Although the dominant OTUs in the disturbed streams were temporally stable, they did not maintain stable ecosystem functions, suggesting that variability in decomposition was driven mainly by changes in the metabolic responses of dominant taxa to environmental fluctuations. Our results show that leaf decomposition rates in reference sites vary little through time, supporting the use of leaf decomposition assays in bioassessment. Our results also highlight the importance of measuring not only the mean rates, but also temporal variability of process rates when assessing the influence of human disturbance on ecosystem functioning.

Fungal alteration of the elemental composition of leaf litter affects shredder feeding activity

Summary Leaf litter from riparian vegetation provides the main source of matter and energy for food webs of small forest streams. Shredding macroinvertebrates mostly feed on this litter when it has been colonised and conditioned by microorganisms, especially by aquatic hyphomycetes. Since shredders feed selectively, they must make foraging decisions based on the physical and chemical characteristics of the food resource, which can change depending on the identity of fungal species. Here, we addressed the effect of changes in fungal assemblage structure on the elemental composition of oak (Quercus robur) leaf litter and how variation in litter quality affects the feeding of a stream shredder. Leaf discs were incubated in microcosms for 2 weeks, inoculated with various fungal assemblages comprised of three species each, and offered to a shredder (Schizopelex festiva, Trichoptera: Sericostomatidae) as food. This shredder ate more leaves with a high mycelial biomass, which depended on fungal assemblage composition. Leaf litter conditioned by different fungal assemblages resulted in different litter N and P concentrations. Mycelial biomass was positively related to litter P concentration, with the lowest and highest P concentrations differing by 40% at most, but not to litter N concentration, even though the lowest and highest N concentrations differed by as much as 35%. The caddisfly larvae ate more leaves with a low C/P ratio. These findings suggest a key role of litter P concentration in eliciting fungal conditioning effects on shredder‐mediated litter decomposition.

Decomposing ability of diverse litter-decomposer macrofungi in subtropical, temperate, and subalpine forests

An integrative survey was conducted on the ability of litter-decomposing macrofungi (LDM) from forests of different climatic regions to decompose litter materials and recalcitrant compounds in the litter under pure culture conditions. A total of 75 isolates in six families of LDM from subtropical, cool temperate (CT), and subalpine (SA) forests in Japan were tested for their ability to decompose a total of eight litter types that are major substrates for macrofungi at each site. The mass loss of the litter (% original mass) during incubation for 12 weeks at 20 °C ranged from −3.1 % to 54.5 %. Macrofungi originated from forests of different climatic regions exhibited similar decomposing abilities, but the SA isolates caused negligible mass loss of Abies needles, possibly due to inhibitory compounds. Decomposing activity for recalcitrant compounds (as acid-unhydrolyzable residues, AUR) was found in many macrofungal isolates. The isolates of Marasmiaceae were generally more able to cause selective decomposition of AUR than those of Mycenaceae and to decompose AUR in partly decomposed materials. The isolates of Xylariaceae had lower ligninolytic activity than those of Basidiomycetes. The AUR mass loss caused by CT isolates was significantly lower in nitrogen-rich beech litter than in its nitrogen-poor counterpart, suggesting a retarding effect of nitrogen on AUR decomposition, which was obvious for Mycenaceae. The effect of fungal family was generally more significant than that of litter type, suggesting that possible changes in the composition of fungal assemblages influence their functioning more than changes in the quality of substrates.

Beech cupules share endophytic fungi with leaves and twigs

Endophytic mycobiota on leaves, twigs and cupules of Fagus crenata were investigated using a culture-dependent method over a growing season to test the hypothesis that endophytic fungi of cupule (a woody phyllome) share some components of the endophytic fungal assemblages with both leaves and twigs. A total of 14 fungal taxa were isolated, and the most frequent taxon was Phomopsis sp., followed by Xylaria sp., Ascochyta fagi and Geniculosporium sp. The compositions of fungal assemblages of leaf laminae and petioles were generally relatively dissimilar to those of current and first-year twigs when compared for each sampling month, and those of cupules and cupule stalks were intermediate between those of leaves and twigs. Permutational multivariate analysis of variance confirmed that month and organ were significant factors of the variation of the composition of endophytic fungal assemblages. Phomopsis sp., a common twig endophyte, and A. fagi, a common leaf endophyte, were common in cupules and cupule stalks. These results suggested that the endophytic fungal assemblages of cupules shared component taxa with those of both leaves and twigs.

The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing.

Symbioses are increasingly seen as dynamic ecosystems with multiple associates and varying fidelity. Symbiont specificity remains elusive in one of the most ecologically successful and economically damaging eukaryotic symbioses: the ambrosia symbiosis of wood-boring beetles and fungi. We used multiplexed pyrosequencing of amplified internal transcribed spacer II (ITS2) ribosomal DNA (rDNA) libraries to document the communities of fungal associates and symbionts inside the mycangia (fungus transfer organ) of three ambrosia beetle species, Xyleborus affinis, Xyleborus ferrugineus and Xylosandrus crassiusculus. We processed 93 beetle samples from 5 locations across Florida, including reference communities. Fungal communities within mycangia included 14-20 fungus species, many more than reported by culture-based studies. We recovered previously known nutritional symbionts as members of the core community. We also detected several other fungal taxa that are equally frequent but whose function is unknown and many other transient species. The composition of fungal assemblages was significantly correlated with beetle species but not with locality. The type of mycangium appears to determine specificity: two Xyleborus with mandibular mycangia had multiple dominant associates with even abundances; Xylosandrus crassiusculus (mesonotal mycangium) communities were dominated by a single symbiont, Ambrosiella sp. Beetle mycangia also carried many fungi from the environment, including plant pathogens and endophytes. The ITS2 marker proved useful for ecological analyses, but the taxonomic resolution was limited to fungal genus or family, particularly in Ophiostomatales, which are under-represented in our amplicons as well as in public databases. This initial analysis of three beetle species suggests that each clade of ambrosia beetles and each mycangium type may support a functionally and taxonomically distinct symbiosis.

Top‐down and bottom‐up control of litter decomposers in streams

Summary Detritivores preferentially consume certain aquatic hyphomycete species while rejecting others. Fungal identity may therefore be a crucial factor determining stream food‐web structure and complexity and extend the impact of microbial diversity to effects up through the food web. In this study, we examined if shredder feeding is affected by the identity of fungi on leaves (bottom‐up effects) and if preferences of shredders for particular fungi affect the composition of fungal assemblages (top‐down effects). Oak leaf discs were conditioned in microcosms with six individual fungal species previously reported as highly palatable (P), unpalatable/rejected (R) and intermediate (I). Additionally, three microcosms were inoculated with three mixtures of four fungal species, each consisting of a different subset of the six species. Colonised discs were offered to three detritivores with different feeding strategies: Proasellus sp. (Isopoda), Echinogammarus meridionalis (Amphipoda) and Schizopelex festiva (Trichoptera). When offered leaves colonised by single fungal species, consumption rates by E. meridionalis and S. festiva were higher on I, followed by P and, finally, R species. Consumption rates by Proasellus sp. were similar across fungal treatments. Consumption rates by the three invertebrates were also similar across all fungal multispecies treatments, suggesting that invertebrate preferences for, or rejection of, a given fungal species may be masked when it grows in proximity to other fungi. Composition and structure of fungal communities were not significantly affected by the feeding of any of the three invertebrates. Our results suggest that certain combinations of fungal and detritivore species result in unpredictable bottom‐up and top‐down effects in stream food webs.

Leaf and root-associated fungal assemblages do not follow similar elevational diversity patterns.

The diversity of fungi along environmental gradients has been little explored in contrast to plants and animals. Consequently, environmental factors influencing the composition of fungal assemblages are poorly understood. The aim of this study was to determine whether the diversity and composition of leaf and root-associated fungal assemblages vary with elevation and to investigate potential explanatory variables. High-throughput sequencing of the Internal Transcribed Spacer 1 region was used to explore fungal assemblages along three elevation gradients, located in French mountainous regions. Beech forest was selected as a study system to minimise the host effect. The variation in species richness and specific composition was investigated for ascomycetes and basidiomycetes assemblages with a particular focus on root-associated ectomycorrhizal fungi. The richness of fungal communities associated with leaves or roots did not significantly relate to any of the tested environmental drivers, i.e. elevation, mean temperature, precipitation or edaphic variables such as soil pH or the ratio carbon∶nitrogen. Nevertheless, the ascomycete species richness peaked at mid-temperature, illustrating a mid-domain effect model. We found that leaf and root-associated fungal assemblages did not follow similar patterns of composition with elevation. While the composition of the leaf-associated fungal assemblage correlated primarily with the mean annual temperature, the composition of root-associated fungal assemblage was explained equally by soil pH and by temperature. The ectomycorrhizal composition was also related to these variables. Our results therefore suggest that above and below-ground fungal assemblages are not controlled by the same main environmental variables. This may be due to the larger amplitude of climatic variables in the tree foliage compared to the soil environment.

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica) varies significantly along an elevation gradient

Little is known about the potential effect of climate warming on phyllosphere fungi, despite their important impact on the dynamics and diversity of plant communities. The structure of phyllosphere fungal assemblages along elevation gradients may provide information about this potential effect, because elevation gradients correspond to temperature gradients over short geographic distances. We thus investigated variations in the composition of fungal assemblages inhabiting the phyllosphere of European beech (Fagus sylvatica) at four sites over a gradient of 1000m of elevation in the French Pyrénées Mountains, by using tag-encoded 454 pyrosequencing. Our results show that the composition of fungal assemblages varied significantly between elevation sites, in terms of both the relative abundance and the presence-absence of species, and that the variations in assemblage composition were well correlated with variations in the average temperatures. Our results therefore suggest that climate warming might alter both the incidence and the abundance of phyllosphere fungal species, including potential pathogens. For example, Mycosphaerella punctiformis, a causal agent of leaf spots, showed decreasing abundance with elevation and might therefore shift to higher elevations in response to warming.

Effects of increased temperature and aquatic fungal diversity on litter decomposition

Abstract Climate warming and biodiversity loss are two major factors threatening freshwaters. Aquatic hyphomycetes are fungi that play a key role in organic matter turnover in streams. To assess the impacts of temperature increase and aquatic hyphomycete diversity on plant-litter decomposition, we manipulated fungal assemblage composition at two levels of diversity (four and eight species) under ambient temperature of 16 °C and two regimes of temperature increase differing in 8 °C: abrupt versus gradual increase from 16 to 24 °C. The effects were evaluated on leaf-litter decomposition, fungal biomass and reproduction. Results showed faster leaf decomposition under increased temperature, but no differences were found between an abrupt and a gradual increase in temperature. Assemblage composition was the major factor controlling fungal biomass and reproduction, while fungal diversity was only critical to maintain reproduction.