Compatible Strains Research Articles

Host-imposed control mechanisms in legume-rhizobia symbiosis.

Legumes are ecologically and economically important plants that contribute to nutrient cycling and agricultural sustainability, features tied to their intimate symbiosis with nitrogen-fixing rhizobia. Rhizobia vary dramatically in quality, ranging from highly growth-promoting to non-beneficial; therefore, legumes must optimize their symbiosis with rhizobia through host mechanisms that select for beneficial rhizobia and limit losses to non-beneficial strains. In this Perspective, we examine the considerable scientific progress made in decoding host control over rhizobia, empirically examining both molecular and cellular mechanisms and their effects on rhizobia symbiosis and its benefits. We consider pre-infection controls, which require the production and detection of precise molecular signals by the legume to attract and select for compatible rhizobia strains. We also discuss post-infection mechanisms that leverage the nodule-level and cell-level compartmentalization of symbionts to enable host control over rhizobia development and proliferation in planta. These layers of host control each contribute to legume fitness by directing host resources towards a narrowing subset of more-beneficial rhizobia.

Cooperative roles of twinning, transformation and strain partitioning on the excellent cryogenic strength-toughness synergy of dual-heterogeneous metastable high entropy alloys

In a metastable Fe50Mn30Co10Cr10 high entropy alloy (HEA), a dual-heterogeneous structure, encompassing both grain size and dislocation heterogeneity, has been constructed to obtain excellent cryogenic mechanical performance by varying the annealing temperature (630 and 740 °C) following severe deformation. The HS-630 sample, consisting of recovered coarse-grains (CG), recrystallized fine-grains (FGs) and un-recrystallized ultrafine-grains (UFGs), possesses higher yield strength (YS) of ∼965 MPa, ultimate tensile strength (UTS) of ∼1680 MPa and uniform elongation (UEL) of ∼45 % when compared to the fully-recrystallized HS-740 sample at liquid nitrogen temperature (LNT). The difference in YS is primarily caused by the grain boundary and dislocation strengthening of UFGs, whereas the higher ductility of the HS-630 sample is associated with the hierarchical activation of transformation- and twinning-induced plasticity (TRIP and TWIP) effects, and compatible strain partitioning between heterogeneous domains. The dual-heterogeneity results in different critical stresses of ε-phase nucleation in heterogeneous domains, and promotes sustainable TRIP effect in CGs and the emergence of TWIP effect in UFGs with strain progressing. Moreover, the strain of the ductile transformed ε-phase is mainly accommodated by non-basal slip, which contributes to the strain hardening in the later deformation stage. Furthermore, the higher cryogenic impact toughness of the HS-630 sample can be attributed to the synergistic effects of the fracture mode, the transformation characteristics, and the heterogeneous strain partitioning.

Characterization of two novel fusariviruses co-infecting a single isolate of phytopathogenic fungus Botrytis cinerea.

A wide diversity of mycoviruses has been reported from Botrytis species, some with the potential to suppress the pathogenic abilities of this fungus. Considering their importance, this study was devised to find potential hypovirulence-associated mycoviruses found in Botrytis cinerea strains isolated from Pakistani strawberry fields. Here we report the complete genome characterization of two fusariviruses co-infecting a single isolate of phytopathogenic fungus B. cinerea (Kst14a). The viral genomes were sequenced by deep sequencing using total RNA fractions of the Kst14a isolate. The identified viruses were tentatively namedBotrytis cinerea fusarivirus 9 (BcFV9) and Botrytis cinerea fusarivirus 3a (BcFV3a). Both viruses had a single-segmented (ssRNA) genome having a size of 6424 and 8370 nucleotides encoding two discontinuous open reading frames (ORFs). ORF-1 of both mycoviruses encodes for a polyprotein having a conserved domain of RNA-dependent RNA polymerase (RdRP) and a helicase domain (Hel) which function in RNA replication, while ORF2 encodes a hypothetical protein with an unknown function, respectively. Phylogenetic analysis indicated that BcFV9 made a clade with the genus Alphafusarivirus and BcFV3a fall in the genus Betafusarivirus in the family Fusariviridae. To our knowledge, this is the first report of two fusariviruses identified in isolates of B. cinerea from Pakistan. Both mycoviruses successfully transfected to a compatible strain of B. cinerea (Mst11). A comparison of virus-free (VF) and virus-infected (VI) isogenic lines showed the presence of these viruses was causing hypovirulence in infected strains. Virus-infected strains also had a small lesion size while testing the pathogenicity via apple assay.

Abstract LB441: An intravenous compatible oncolytic vaccinia virus treated hepatic metastasis of colon cancer through extensive cancer cell killing and activation of cytotoxic effector differentiation

Abstract Colorectal cancer (CRC) is the third most common cancer worldwide and nearly 50% of CRC patients develop liver metastasis during the course of their disease. Treatment of colorectal cancer liver metastasis (CRLM) has been particularly challenging due to tolerogenic nature of liver immune microenvironment as well as an eventual development of therapy resistance to standard chemotherapy regimen. One promising area of cancer immunotherapy is oncolytic virotherapy that can selectively destroy tumor cells and stimulate anti-tumor immune response. In this study, we systemically administered mSJ-650, an intravenous compatible oncolytic Wyeth strain vaccinia virus that expresses human complement regulatory protein CD55 and murine GM-CSF in place of viral thymidine kinase gene and has a deletion of the viral K2L gene, and evaluated its anti-tumor efficacy in CRLM. Mouse CRLM was induced by intrasplenic injection of 5×105 MC38-OVA cancer cells. Following tumor nodules formation in the liver, low dose (1×106 pfu) or high dose (3×106 pfu) of mSJ-650 was administered multiple times via tail vein and liver was harvested for evaluation of anti-tumor efficacy. Flow cytometry analysis was performed to investigate changes in hepatic and tumor immune microenvironment upon mSJ-650 treatment. Liver and tumor tissue were stained for immunofluorescence imaging of viral replication within the tumor cells and subsequent oncolysis by the virus. Systemic administration of mSJ-650 showed potent anti-tumor efficacy and led to significant reduction in metastatic nodule formation in liver even at low dose. The anti-tumor efficacy was mediated by tumor cell-specific viral distribution and replication, followed by lytic egress of mSJ-650 from infected tumor cells. Anti-tumor efficacy of mSJ-650 also accompanied a dramatic shift in immunologically tolerant hepatic microenvironment to immune-stimulatory one by decreasing proportion of myeloid-derived suppressor cells, Kupffer cells, and monocyte-derived macrophages (MDMs) in the liver while increasing CD8+ T cell infiltration by 2~3 folds. Moreover, mSJ-650 treatment was associated with phenotypic change in hepatic immune cells, as evidenced by Kupffer cell and MDM polarization to M1 phenotype and elevated expression of activation markers and cytotoxic molecules in CD8+ T cells. Changes in hepatic immune microenvironment were also observed in tumor nodules, especially in those completely surrounded by adjacent liver tissue, suggesting that anti-tumor immune response in tumor bed is potentiated by reprogramming of tumor-adjacent hepatic immune microenvironment. Systemic administration of mSJ-650 demonstrated superior anti-tumor efficacy in CRLM which was mediated by direct tumor cell killing and tumor-adjacent hepatic immune microenvironment reprogramming by the virus. Citation Format: Eunhye Kim, Yeonsoo Yang, Solchan Won, Namhee Lee, Songyi Lee, Mi-Ju Park, Byung-Jin Jung, Yun-Kyoung Hong, Hang-Rae Kim, Dong-Sup Lee, Keunhee Oh. An intravenous compatible oncolytic vaccinia virus treated hepatic metastasis of colon cancer through extensive cancer cell killing and activation of cytotoxic effector differentiation [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 2 (Late-Breaking, Clinical Trial, and Invited Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(7_Suppl):Abstract nr LB441.

Enhancing Pisum sativum growth and symbiosis under heat stress: the synergistic impact of co-inoculated bacterial consortia and ACC deaminase-lacking Rhizobium

The 1-aminocyclopropane-1-carboxylate (ACC) deaminase is a crucial bacterial trait, yet it is not widely distributed among rhizobia. Hence, employing a co-inoculation approach that combines selected plant growth-promoting bacteria with compatible rhizobial strains, especially those lacking ACC deaminase, presents a practical solution to alleviate the negative effects of diverse abiotic stresses on legume nodulation. Our objective was to explore the efficacy of three non-rhizobial endophytes, Phyllobacterium salinisoli (PH), Starkeya sp. (ST) and Pseudomonas turukhanskensis (PS), isolated from native legumes grown in Tunisian arid regions, in improving the growth of cool-season legume and fostering symbiosis with an ACC deaminase-lacking rhizobial strain under heat stress. Various combinations of these endophytes (ST + PS, ST + PH, PS + PH, and ST + PS + PH) were co-inoculated with Rhizobium leguminosarum 128C53 or its ΔacdS mutant derivative on Pisum sativum plants exposed to a two-week heat stress period.Our findings revealed that the absence of ACC deaminase activity negatively impacted both pea growth and symbiosis under heat stress. Nevertheless, these detrimental effects were successfully mitigated in plants co-inoculated with ΔacdS mutant strain and specific non-rhizobial endophytes consortia. Our results indicated that heat stress significantly altered the phenolic content of pea root exudates. Despite this, there was no impact on IAA production. Interestingly, these changes positively influenced biofilm formation in consortia containing the mutant strain, indicating synergistic bacteria-bacteria interactions. Additionally, no positive effects were observed when these endophytic consortia were combined with the wild-type strain. This study highlights the potential of non-rhizobial endophytes to improve symbiotic performance of rhizobial strains lacking genetic mechanisms to mitigate stress effects on their legume host, holding promising potential to enhance the growth and yield of targeted legumes by boosting symbiosis.

Disease resistance features of the executor R gene Xa7 reveal novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae.

Bacterial blight (BB), caused by Xanthomonas oryzae pv. oryzae (Xoo), is a widespread and destructive disease in rice production. Previously, we cloned an executor R gene, Xa7, which confers durable and broad-spectrum resistance to BB. Here, we further confirmed that the transcription activator-like effector (TALE) AvrXa7 in Xoo strains could directly bind to the effector-binding element (EBE) in the promoter of the Xa7 gene. Other executor R genes (Xa7, Xa10, Xa23, and Xa27) driven by the promoter of the Xa7 gene could be activated by AvrXa7 and trigger the hypersensitive response (HR) in tobacco leaves. When the expression of the Xa23 gene was driven by the Xa7 promoter, the transgenic rice plants displayed a similar resistance spectrum as the Xa7 gene, demonstrating that the disease resistance characteristics of executor R genes are mainly determined by their induction patterns. Xa7 gene is induced locally by Xoo in the infected leaves, and its induction not only inhibited the growth of incompatible strains but also enhanced the resistance of rice plants to compatible strains, which overcame the shortcomings of its race-specific resistance. Transcriptome analysis of the Xa7 gene constitutive expression in rice plants displayed that Xa7-mediated disease resistance was related to the biosynthesis of lignin and thus enhanced resistance to Xoo. Overall, our results provided novel insights and important resources for further clarifying the molecular mechanisms of the executor R genes.

Homeodomain 1 Genes of the Different HD Subloci of Flammulina velutipes Can Activate the HD Pathway and Are Involved in Mating, Clamp Cell Formation, and Upregulation of FvClp1.

Flammulina velutipes has two independent and functional mating type factors, HD and PR. The HD locus contains two separate subloci: HD-a and HD-b. In this study, we investigated the roles of Hd1 genes of the HD-a and HD-b subloci in the process of mating, clamp cell formation, and regulation of FvClp1 (F. velutipes clampless1 gene) gene expression in F. velutipes. To this end, we introduced Hd1 genes from mating compatible strains into F. velutipes monokaryon L11. Overexpression of Hd1 gene FvHd-a1-1 of the HD-a sublocus resulted in the formation of pseudoclamps in L11 monokaryons. L11 mutants overexpressing the Hd1 gene FvHd-b1-2 of the HD-b sublocus also similarly developed pseudoclamps in the L11 monokaryons. Moreover, these mutant L11 monokaryons produced complete clamps when crossed with monokaryotic strains that differed at the PR loci, i.e., when selective activation of the PR pathway was obtained through crossing. Thus, Hd1 genes of the two different HD subloci in F. velutipes can activate the HD mating type pathway and induce clamp cell formation. In addition, activation of the HD pathway resulted in upregulation of the FvClp1 gene. Finally, to complete clamp cell formation, activation of the PR pathway appears to be essential. Overall, these findings were beneficial for deepening our understanding of sexual reproduction and fruiting body development of edible fungi.

Locking-free isogeometric discretizations of linear plane Timoshenko rods: LAS elements

We make use of linear plane curved Timoshenko rods as a model problem to study how to overcome shear and membrane locking in NURBS-based discretizations. In this work, we propose lumped-assumed-strain (LAS) elements, a projection-based assumed-strain treatment that removes shear and membrane locking for a very broad range of slenderness ratios. For a NURBS patch with basis functions of degree p and Cp−1 continuity across element boundaries, the space of the assumed strains is defined on a B-spline patch with the same elements, but using basis functions of degree p−1 and Cp−2 continuity across element boundaries. The assumed strains are obtained by performing a L2 projection of the compatible strains at the patch level in which the consistent mass matrix is substituted with the lumped mass matrix. Our numerical investigations suggest that LAS elements need either the same or slightly finer mesh resolutions than B̄ elements in order for the relative errors in L2 norm of the unknowns and the stress resultants to be all below 1%. However, LAS elements are significantly more computationally efficient than B̄ elements for a given mesh. The use of C1-continuous quadratic LAS elements with 2 Gauss–Legendre quadrature points per element exhibit superconvergence of the stress resultants for most slenderness ratios, making it a particularly cost-effective choice of obtaining accurate results. When compared with linear Lagrange B̄ elements with 2 Gauss–Legendre quadrature points per element, C1-continuous quadratic LAS elements with 2 Gauss–Legendre quadrature points per element require far fewer elements in order to obtain relative errors in L2 norm of the unknowns and the stress resultants smaller than 1%.

Photosynthesis and other factors affecting the establishment and maintenance of cnidarian-dinoflagellate symbiosis.

Coral growth depends on the partnership between the animal hosts and their intracellular, photosynthetic dinoflagellate symbionts. In this study, we used the sea anemone Aiptasia, a laboratory model for coral biology, to investigate the poorly understood mechanisms that mediate symbiosis establishment and maintenance. We found that initial colonization of both adult polyps and larvae by a compatible algal strain was more effective when the algae were able to photosynthesize and that the long-term maintenance of the symbiosis also depended on photosynthesis. In the dark, algal cells were taken up into host gastrodermal cells and not rapidly expelled, but they seemed unable to reproduce and thus were gradually lost. When we used confocal microscopy to examine the interaction of larvae with two algal strains that cannot establish stable symbioses with Aiptasia, it appeared that both pre- and post-phagocytosis mechanisms were involved. With one strain, algae entered the gastric cavity but appeared to be completely excluded from the gastrodermal cells. With the other strain, small numbers of algae entered the gastrodermal cells but appeared unable to proliferate there and were slowly lost upon further incubation. We also asked if the exclusion of either incompatible strain could result simply from their cells' being too large for the host cells to accommodate. However, the size distributions of the compatible and incompatible strains overlapped extensively. Moreover, examination of macerates confirmed earlier reports that individual gastrodermal cells could expand to accommodate multiple algal cells. This article is part of the theme issue 'Sculpting the microbiome: how host factors determine and respond to microbial colonization'.

Optimizing tomato seedling growth with indigenous mangrove bacterial inoculants and reduced NPK fertilization.

The search for ecofriendly products to reduce crop dependence on synthetic chemical fertilizers presents a new challenge. The present study aims to isolate and select efficient native PGPB that can reduce reliance on synthetic NPK fertilizers. A total of 41 bacteria were isolated from the sediment and roots of mangrove trees (Avicennia marina) and assessed for their PGP traits under in vitro conditions. Of them, only two compatible strains of Bacillus species were selected to be used individually and in a mix to promote tomato seedling growth. The efficiency of three inoculants applied to the soil was assessed in a pot experiment at varying rates of synthetic NPK fertilization (0, 50, and 100% NPK). The experiment was set up in a completely randomized design with three replications. Results showed that the different inoculants significantly increased almost all the studied parameters. However, their effectiveness is strongly linked to the applied rate of synthetic fertilization. Applying bacterial inoculant with only 50% NPK significantly increased the plant height (44-51%), digital biomass (60-86%), leaf area (77-87%), greenness average (29-36%), normalized difference vegetation index (29%), shoot dry weight (82-92%) and root dry weight (160-205%) compared to control plants. Concerning the photosynthetic activity, this treatment showed a positive impact on the concentrations of chlorophyll a (25-31%), chlorophyll b (34-39%), and carotenoid (45-49%). Interestingly, these increases ensured the highest values significantly similar to or higher than those of control plants given 100% NPK. Furthermore, the highest accumulation of N, P, K, Cu, Fe, Zn, and Ca in tomato shoots was recorded in plants inoculated with the bacterial mix at 50% NPK. It was proven for the first time that the native PGP bacteria derived from mangrove plant species A. marina positively affects the quality of tomato seedlings while reducing 50% NPK.

Genomic and metabolomic diversity within a familial population of Aspergillus flavus.

Aspergillus flavus is an agriculturally significant micro-fungus having potential to contaminate food and feed crops with toxic secondary metabolites such as aflatoxin (AF) and cyclopiazonic acid (CPA). Research has shown A. flavus strains can overcome heterokaryon incompatibility and undergo meiotic recombination as teleomorphs. Although evidence of recombination in the AF gene cluster has been reported, the impacts of recombination on genotype and metabolomic phenotype in a single generation are lacking. In previous studies, we paired an aflatoxigenic MAT1-1 A. flavus strain with a non-aflatoxigenic MAT1-2 A. flavus strain that had been tagged with green fluorescent protein and then 10 F1 progenies (a mix of fluorescent and non-fluorescent) were randomly selected from single-ascospore colonies and broadly examined for evidence of recombination. In this study, we determined four of those 10 F1 progenies were recombinants because they were not vegetatively compatible with either parent or their siblings, and they exhibited other distinctive traits that could only result from meiotic recombination. The other six progenies examined shared genomic identity with the non-aflatoxigenic, fluorescent, and MAT1-2 parent, but were metabolically distinct. This study highlights phenotypic and genomic changes that may occur in a single generation from the outcrossing of sexually compatible strains of A. flavus.

Comparative Structural Analysis of The Homeodomain Protein in the Bipolar Basidiomycete, Mycoleptodonoides aitchisonii (Bunaharitake)

Mycoleptodonoides aitchisonii is a bipolar mushroom with monokaryons can form clamp cells, regardless of the mating type. Previously, only HD2-18 was identifi ed and characterized at the A locus of Maspi18 (A1). In this study, unlike the A locus in strain Maspi18, HD1-7-like gene (Mahd1-7) and HD2-7 gene (Mahd2-7) were identifi ed at the A locus of the compatible strain Maspi7 (A2), but the nine fl anking genes were highly conserved, suggesting that recombination events may have occurred between HD1 and HD2 genes over evolutionary time. Following phylogenetic and HD protein structural comparisons with other basidiomycetes, homeodomains were identifi ed in HD2-7 and HD2-18, but the former lacked nuclear localization signals (NLS) whereas the latter, like the HD1-7-like protein, did not. These fi ndings indicated that one homeodomain and several NLS on the same or different HD proteins is the minimum suffi cient for driving clamp cell formation in M. aitchisonii. The fi ndings implied that over evolutionary time, unlike HD2, the homeodomain in HD1 does not play a major role in clamp cell formation, and that HD1-7 performs the function of carrying the NLS. Herein, we propose a new hypothesis for clamp cell formation in M. aitchisonii. The fi ndings of this study provide a foundation for understanding the role of heterokaryonization in basidiomycete mushrooms.

Life cycle and mating compatibility in the Japanese white jelly mushroom, Tremella yokohamensis.

In this study, white jelly mushrooms that were collected in Tottori Prefecture, Japan, were identified as Tremella yokohamensis by phylogenetic analysis of the rDNA-ITS region. Fluorescent microscopic analysis using 4',6-diamidino-2-phenylindole staining to visualize the nuclei in each cell revealed that basidiospores isolated from the fruiting body were monokaryotic. Furthermore, monokaryotic yeasts were germinated from these basidiospores and the resulting crossed mycelium was dikaryotic and bore clamp cells, suggesting a heterothallic lifecycle for this species. Crossing between compatible yeast strains, such as TUFC 101924 and TUFC 101925, that were isolated from the same fruiting body, successfully induced development of the filamentous stage bearing clamp connections after 7 d of incubation on Kagome vegetable juice agar medium. Mating compatibility tests employing 15 basidiospore isolates revealed that this fungus possess a bipolar mating system. The results indicated that T. yokohamensis is a heterothallic and bipolar mushroom.

Exploring The Potential of Microalgae-Fungi Co-Cultivation for Sustainable Bioprocessing in Microalgae Biorefinery

Developing co-cultivation systems involving microalgae and fungi has shown promising potential for microalgae harvesting technology. As discussed in this review, the co-cultivation of microalgae and fungi has emerged as a novel approach for enhancing biomass and lipid production, wastewater treatment, biofuel production, and high-value products. However, despite being used for a few years, this technique is still in its early stages of development and has yet to be widely applied in the industry. The main challenges associated with co-cultivation include designing effective cultivation systems, managing nutrient requirements, selecting compatible strains, and implementing contamination control measures. In this study, bibliometric analysis was conducted (using the Web of Science database) to examine global trends and developments in microalgae-fungi co-cultivation research between 2014 and 2023, which aimed to identify the research progression, prominent contributors, and leading countries in the research field. The dataset comprised 682 articles, 242 reviews, 31 book chapters, and 22 conference papers. The results showed a rapid increment of publications with China as an active nation in this research area, followed by India, the USA, Italy, Spain, etc. As demonstrated in this study, the immense potential of co-cultivation techniques suggests further exploration, particularly in employing different microalgae species with exceptional characteristics in conjunction with non-pathogenic and edible fungi for profitable industrialization.

A mixed finite element/finite volume formulation for granular bentonite mixtures

A mixed finite element/finite volume formulation is presented for characterising the macroscopic behaviour of granular bentonite mixtures. The formulation enables fitting the hydro-mechanical behaviour of a mixture parting from a double porosity numerical model. The granular bentonite mixture is abstracted as a finite set of homogeneous units made with bentonite grains (where microstructure and macrostructure coexist) embedded in megapores. The separate mass balances of macrostructural and microstructural water are solved for each unit using the finite volume method. The water mass balance in the megaporosity is calculated for the entire domain using the finite element method. To solve the equilibrium equation, a displacement-based finite element method is applied after defining a global stiffness matrix that integrates the effect of megaporosity. After implementing these approaches in a double porosity numerical model, satisfactory modelling results were obtained in agreement with the experimental tests. The results of the proposed model effectively fit those of a triple porosity bentonite unit model that uses a contact model for displacement compatibility of the units. This contributes to the qualification of the presented model’s ability to produce compatible strains of the units using the proposed global stiffness.

Efficient production of single cell protein from biogas slurry using screened alkali-salt-tolerant Debaryomyces hansenii

Production of single cell protein (SCP) by recovering ammonia nitrogen from biogas slurry shows great potential against protein scarcity and unsustainable production of plant and animal proteins. Herein, a high-alkali-salt-tolerant yeast strain, Debaryomyces hansenii JL8-0, was isolated and demonstrated for high-efficient SCP production. This strain grew optimally at pH 8.50 and 2500 mg/L NH4+-N, and it could efficiently utilize acetate as the additional carbon source. Under optimal conditions, SCP biomass of 32.21 g/L and productivity of 0.32 g/L·h−1 were obtained in fed-batch fermentation. Remarkably, nearly complete (97.40 %) ammonia nitrogen from biogas slurry was recovered, probably due to its high affinity for NH4+-N. Altogether, this strain showed advantages in terms of cell biomass titer, productivity, and yield. A cultivation strategy was proposed by co-culturing D. hansenii with other compatible yeast strains to achieve high-efficient SCP production from biogas slurry, which could be a promising alternative technology for biogas slurry treatment.

A method to evaluate the axial buckling load of periodic Vierendeel beams

This paper presents some closed form solutions for the buckling problem of periodic Vierendeel girders subjected to compressive axial loads. These are obtained by studying a geometrically non-linear ideal discrete beam, composed of cells or panels that deform only according to the inner forces transferring modes of the girder unit cell. In particular, the recursive equations governing the equilibrium of this discrete system are derived by the virtual works principle. Then, they are exactly solved and formulae for the critical loads are achieved. Although the ideal girder deforms with geometrically not compatible longitudinal shear strains, it gives very accurate predictions in a wide range of conditions of technical interest. These theoretical results are used as starting point for the analysis of the stiffening effect yielding a Euler critical load significantly higher than the buckling load evaluated on the basis of the classical Engesser’s assumptions. Specifically, by an ideal girder auxiliary solution, the discrete systems of self-equilibrated inner bending moments (self-moments) restoring the longitudinal shear strains compatibility are studied and it is shown that the axial loads under which these moments exist are accurate critical loads estimates of the real girder. Closed form solutions are obtained also for this problem and a simplified formula is derived for evaluating real girders buckling loads. The applicability of the reported solutions is verified by a validation study based on a series of finite element girder models.

The Genome of a Pigeonpea Compatible Rhizobial Strain '10ap3' Appears to Lack Common Nodulation Genes.

The symbiotic fixation of atmospheric nitrogen (N) in root nodules of tropical legumes such as pigeonpea (Cajanus cajan) is a complex process, which is regulated by multiple genetic factors at the host plant genotype microsymbiont interface. The process involves multiple genes with various modes of action and is accomplished only when both organisms are compatible. Therefore, it is necessary to develop tools for the genetic manipulation of the host or bacterium towards improving N fixation. In this study, we sequenced the genome of a robust rhizobial strain, Rhizobium tropici '10ap3' that was compatible with pigeonpea, and we determined its genome size. The genome consisted of a large circular chromosome (6,297,373 bp) and contained 6013 genes of which 99.13% were coding sequences. However only 5833 of the genes were associated with proteins that could be assigned to specific functions. The genes for nitrogen, phosphorus and iron metabolism, stress response and the adenosine monophosphate nucleoside for purine conversion were present in the genome. However, the genome contained no common nod genes, suggesting that an alternative pathway involving a purine derivative was involved in the symbiotic association with pigeonpea.

An SFEM Abaqus UEL for Nonlinear Analysis of Solids

In this paper, three different smoothed finite element method (SFEM), viz., node-based smoothed finite element method (NS-FEM), face-based smoothed finite element method (FS-FEM) and [Formula: see text]-finite element method ([Formula: see text]-FEM) are adopted for 3D solids undergoing large deformation. The common feature of all these techniques is the introduction of smoothed strain which is written as a weighted average of the compatible strain field over smoothing domains. The choice of smoothing domain is what differentiates them. The spatial discretization can be based on the simplest and automatically genera-table four-node tetrahedral elements and aforementioned techniques have shown to yield accurate results even on a coarser discretization. To take the advantages of the SFEM, it is beneficial to the FEM community to have it implemented in the widely used Abaqus[Formula: see text] software. Such an implementation is challenging because the neighboring SFEM elements are interconnected in the smoothed strain matrices in the elemental level. In this work, the above-mentioned SFEM models are implemented in the commercial software Abaqus using the softwares’ user element (UEL) feature. The challenges during the definition and the assembly of the smoothing domains are effectively addressed in this work. The developed UEL and the associated files can be downloaded from https://github.com/nsundar/3DSFEM. The implementation is validated against benchmark examples and the robustness is demonstrated with complicated real-life problems, viz., tire patch contact with road and simulation of human thumb.

Functional analysis of Wolbachia Cid effectors unravels cooperative interactions to target host chromatin during replication.

Wolbachia are common bacteria among terrestrial arthropods. These endosymbionts transmitted through the female germline manipulate their host reproduction through several mechanisms whose most prevalent form called Cytoplasmic Incompatibility -CI- is a conditional sterility syndrome eventually favoring the infected progeny. Upon fertilization, the sperm derived from an infected male is only compatible with an egg harboring a compatible Wolbachia strain, this sperm leading otherwise to embryonic death. The Wolbachia Cif factors CidA and CidB responsible for CI and its neutralization function as a Toxin-Antitoxin system in the mosquito host Culex pipiens. However, the mechanism of CidB toxicity and its neutralization by the CidA antitoxin remain unexplored. Using transfected insect cell lines to perform a structure-function analysis of these effectors, we show that both CidA and CidB are chromatin interactors and CidA anchors CidB to the chromatin in a cell-cycle dependent-manner. In absence of CidA, the CidB toxin localizes to its own chromatin microenvironment and acts by preventing S-phase completion, independently of its deubiquitylase -DUB- domain. Experiments with transgenic Drosophila show that CidB DUB domain is required together with CidA during spermatogenesis to stabilize the CidA-CidB complex. Our study defines CidB functional regions and paves the way to elucidate the mechanism of its toxicity.