The increasing Ozone (O3) concentration in various regions of China has garnered significant attention, highlighting the need to understand the mechanisms of O3 formation. This study focuses on the source apportionment of O3 in Jilin City during and after the COVID-19 lockdown countermeasure, and also the influence of anthropogenic emissions on O3 concentration. The contributions of different O3 emission sources were quantified using the Weather Research and Forecasting Community Multi-Scale Air Quality (WRF-CMAQ) model in conjunction with the Integrated Source Apportionment Method (ISAM). The results indicate a significant increase in O3 concentrations during the lockdown in Jilin City, which were particularly characterized by long-distance transportation. Transportation is identified as the primary direct source of O3 in Jilin City, with Yongji County contributing the most among the six designated regions. This study highlights variations in the causes and sources of O3 pollution among the different regions of Jilin City. Simply controlling anthropogenic emissions is inadequate for effectively managing O3 pollution and may even worsen the situation. It is more effective to focus on controlling O3’s precursors. These findings improve the understanding of O3 pollution in Jilin City and provide valuable insights for developing O3 control policies. Similarly, this research is applicable to other countries and regions.