Common Sea Urchin Paracentrotus Lividus Research Articles

Morphologic and genic effects of waste pollution on the reproductive physiology of Paracentrotus lividus lmk: a mesocosm experiment.

A considerable amount of coastal contamination is caused by wastes deriving from household and the degradation and the metabolism of plants and animals, even if our attention is commonly focused on industrial pollutants and contaminants. Waste pollutants are mainly represented by highly diluted soluble compounds and particles deriving from dead organisms. This complex combination, consisting of suspended particles and dissolved nutrients, has a significant impact on coastal planktonic and benthic organisms, also playing an active role in the global cycles of carbon. In addition, production practices are nowadays shifting towards recirculated aquaculture systems (RAS) and the genic responses of target organisms to the pollution deriving from animal metabolism are still scarcely addressed by scientific investigations. The reservoir of organic matter dissolved in the seawater is by far the least understood if compared to that on land, cause only a few compounds have been identified and their impacts on animals and plants are poorly understood. The tendency of these compounds to concentrate at interfaces facilitates the absorption of dissolved organic compound (DOC) onto suspended particles. Some DOC components are chemically combined with dissolved metals and form complexes, affecting the chemical properties of the seawater and the life of the coastal biota. In this research, we compared the reproductive performances of the common sea urchin Paracentrotus lividus cultured in open-cycle tanks to those cultured in a recirculating aquaculture system (RAS), where pollution progressively increased during the experiment due to animal escretions. Sea urchins were cultured for 7months under these two conditions and their gametes were collected. Embryos resulting by in vitro fertilization were analyzed by Real Time qPCR to identify possible effects of pollution-induced stress. The fertility of sea urchins was evaluated, as well as the gonadosomatic indices and the histological features of gonads. Our results indicate that pollution due to excess of nutrients, event at sub-lethal concentrations, may hardly impact the reproductive potential of this key species and that chronic effects of stress are revealed by the analyses of survival rates and gene expression.

Hexagonal Voronoi pattern detected in the microstructural design of the echinoid skeleton.

Repeated polygonal patterns are pervasive in natural forms and structures. These patterns provide inherent structural stability while optimizing strength-per-weight and minimizing construction costs. In echinoids (sea urchins), a visible regularity can be found in the endoskeleton, consisting of a lightweight and resistant micro-trabecular meshwork (stereom). This foam-like structure follows an intrinsic geometrical pattern that has never been investigated. This study aims to analyse and describe it by focusing on the boss of tubercles—spine attachment sites subject to strong mechanical stresses—in the common sea urchin Paracentrotus lividus. The boss microstructure was identified as a Voronoi construction characterized by 82% concordance to the computed Voronoi models, a prevalence of hexagonal polygons, and a regularly organized seed distribution. This pattern is interpreted as an evolutionary solution for the construction of the echinoid skeleton using a lightweight microstructural design that optimizes the trabecular arrangement, maximizes the structural strength and minimizes the metabolic costs of secreting calcitic stereom. Hence, this identification is particularly valuable to improve the understanding of the mechanical function of the stereom as well as to effectively model and reconstruct similar structures in view of future applications in biomimetic technologies and designs.

Flexible sutures reduce bending moments in shells: from the echinoid test to tessellated shell structures

In the field of structural engineering, lightweight and resistant shell structures can be designed by efficiently integrating and optimizing form, structure and function to achieve the capability to sustain a variety of loading conditions with a reduced use of resources. Interestingly, a limitless variety of high-performance shell structures can be found in nature. Their study can lead to the acquisition of new functional solutions that can be employed to design innovative bioinspired constructions. In this framework, the present study aimed to illustrate the main results obtained in the mechanical analysis of the echinoid test in the common sea urchin Paracentrotus lividus (Lamarck, 1816) and to employ its principles to design lightweight shell structures. For this purpose, visual survey, photogrammetry, three-dimensional modelling, three-point bending tests and finite-element modelling were used to interpret the mechanical behaviour of the tessellated structure that characterize the echinoid test. The results achieved demonstrated that this structural topology, consisting of rigid plates joined by flexible sutures, allows for a significant reduction of bending moments. This strategy was generalized and applied to design both free-form and form-found shell structures for architecture exhibiting improved structural efficiency.

The effect of temperature on somatic and gonadal development of the sea urchin Paracentrotus lividus (Lamarck, 1816)

The common sea urchin Paracentrotus lividus (Lamarck, 1816) is the most consumed echinoid in Europe. It is considered a seafood delicacy, given its high-valued gonads. In sea urchins, temperature probably represents the most important abiotic factor affecting several physiological processes and it is essential to better establish optimal reference conditions for aquaculture. In this study, four rearing temperatures (18 °C, 20 °C, 22 °C and 24 °C) were tested in wild-caught adult P. lividus, from the west coast of Portugal. The animals were fed an agar-based artificial diet, over a period of 90 days. The effect of temperature was tested in terms of test diameter and total wet weight, feed intake, gonadosomatic index (GI) and reproductive development. Thus, linear growth rate (mm month−1), daily growth rate (% day−1), total wet weight gain (mg ind.−1 day−1) and total feed intake (g day−1 ind.−1) of sea urchins were calculated at the end of the trial. Although feed intake was relatively similar between groups, the results showed a consistent response for biometric parameters regarding the different temperatures regimes. The rearing temperature of 22 °C promoted the highest test diameter (.53 mm month−1) and total wet weight (47 mg ind.−1 day−1) growth. Sea urchins from the same group (22 °C) presented the highest final GI of 9.3%, a 163.5% increase in comparison to the initial value, after the fasting period (3.5%). This temperature also promoted the highest gonad maturation levels, both in males and females. Although increasing temperatures (until 22 °C) generally produced favourable rearing results, the 24 °C regime led to lower somatic and gonadal growth, plus slower gonad maturation results. Overall, P. lividus fed with a formulated diet and reared at 20–22 °C, showed considerable somatic and gonadal growth, as well as a significant sexual maturation, which will allow to obtain developed gonads and gametes all year round. On the other hand, 18 °C promoted a slower progression in the gametogenic cycle, which may contribute to produce gonads with better organoleptic properties for human consumption.

Common sea urchin (Paracentrotus lividus) and sea cucumber of the genus Holothuria as bioindicators of pollution in the study of chemical contaminants in aquatic media. A revision

Abstract Currently many pollutants enter the seas and oceans as a result of anthropogenic activities such as agriculture, fishing, shipping, etc. Many of these chemical compounds cause serious damage to marine and terrestrial ecosystems because they tend to accumulate and begin their activity as pollutants once their useful cycle has ended. Therefore, there is growing concern about how to act to stop the increase in environmental pollution. Some of these compounds that began to accumulate in the environment since the last century are well known by the scientific community and are widely called persistent pollutants. This group includes polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), and heavy metals, among others. However, other compounds that have not been considered as contaminants have appeared recently. These are the so-called emerging pollutants, which involve a long list of compounds including drugs, hormones, antimicrobials, plasticizers, UV filters, etc. Through the study of different organisms, the presence of these pollutants in natural environments as well as the harmful effects they cause to the biota present in said media are being deeply investigated. Two of the aquatic model organisms used as bioindicators in the different studies for this purpose are reviewed here: the sea cucumber of the genus Holothuria and the common sea urchin Paracentrotus lividus that share the fact of being, both, edible echinoderms. This review could be used to make people aware of the damage it is causing through the irresponsible management of natural resources, so that they serve to launch a series of measures that allow recovering the original conditions of the different ecosystems.

Effects of seawater chemistry (Mg2+/Ca2+ ratio) and diet on the skeletal Mg/Ca ratio in the common sea urchin Paracentrotus lividus

It has been argued that concentration of major metallic ions such as Mg2+ and Ca2+ plays a role in determining the composition of the echinoderm skeleton. Consequently, in several studies Mg/Ca ratio from modern and fossil echinoderm ossicles was used as a proxy of secular Mg2+/Ca2+ changes of Phanerozoic seawater. However, although significant progress has been made in understanding biomineralization of echinoderms, it is still largely unknown what are the sources and physiological pathways of major ions that contribute to skeleton formation. Herein we tested the effects of modifications of ambient seawater Mg2+/Ca2+ ratio (which is typically ∼5) and Mg-enrichment of the diet on the Mg/Ca ratio in regenerating spines of sea urchin Paracentrotus lividus under experimental conditions. We found that sea urchins cultured in seawater with Mg2+/Ca2+ ratio decreased to ∼1.9 produced a skeleton with also decreased Mg/Ca ratio. However, the skeleton of specimens fed on a Mg-enriched diet showed significantly higher Mg/Ca ratio. This suggests that the seawater is an important but not the only source of ions that contributes to the Mg/Ca ratio of the skeleton. Consequently, the reliability of geochemical models that link directly seawater chemistry with the Mg/Ca ratio of the skeleton should be reevaluated.

Molecular and expression analysis of the Allograft inflammatory factor 1 (AIF-1) in the coelomocytes of the common sea urchin Paracentrotus lividus

Allograft inflammatory factor 1 (AIF-1) is a highly conserved gene involved in inflammation, cloned and characterized in several evolutionary distant animal species. Here, we report the molecular identification, characterization and expression of AIF-1 from the common sea urchin Paracentrotus lividus. In this species, AIF-1 encodes a predicted 151 amino acid protein with high similarity to vertebrate AIF-1 proteins. Immunocytochemical analyses on coelomocytes reveal localization of the AIF-1 protein in amoebocytes (perinuclear cytoplasmic zone) and red sphaerulocytes (inside granules), but not in vibratile cells and colorless sphaerula cells. The significant increase of AIF-1 expression (mRNA and protein) found in the coelomocytes of the sea urchin after Gram + bacterial challenge suggests the involvement of AIF-1 in the inflammatory response. Our analysis on P. lividus AIF-1 contributes to elucidate AIF-1 function along the evolutionary scale and consolidate the key evolutionary position of echinoderms throughout metazoans with respect to the common immune paths.

Long-term maintenance of the sea urchin Paracentrotus lividus in culture

The common sea urchin Paracentrotus lividus (Lamarck, 1816) is an important commercial species in the Mediterranean Sea for the consumption of its gonads (roe). This species has also long been used as an animal model in developmental biology and as an indicator in the assessment of environmental quality. In recent decades, the exploitation of this marine resource has become increasingly intensive, causing the depletion of wild stocks. The ripple effect observed in the laboratory use of this species has been the growing difficulty in finding valiant mature animals in the wild. We focused on the long-term maintenance of wild P. lividus and on the essential question of diet to maintain the animals and improve gonad development. The use of practical ration blocks which are nutrient-rich and show stability, easy storage and handling, resulted reduction in labor requirement and time for feeding streamlining the feeding practice. A significantly higher gonad production and a prolonged period of reproduction were obtained compared to wild caught individuals over the same period of time.

Population genomics meet Lagrangian simulations: Oceanographic patterns and long larval duration ensure connectivity among Paracentrotus lividus populations in theAdriatic and Ionian seas.

Connectivity between populations influences both their dynamics and the genetic structuring of species. In this study, we explored connectivity patterns of a marine species with long‐distance dispersal, the edible common sea urchin Paracentrotus lividus, focusing mainly on the Adriatic–Ionian basins (Central Mediterranean). We applied a multidisciplinary approach integrating population genomics, based on 1,122 single nucleotide polymorphisms (SNPs) obtained from 2b‐RAD in 275 samples, with Lagrangian simulations performed with a biophysical model of larval dispersal. We detected genetic homogeneity among eight population samples collected in the focal Adriatic–Ionian area, whereas weak but significant differentiation was found with respect to two samples from the Western Mediterranean (France and Tunisia). This result was not affected by the few putative outlier loci identified in our dataset. Lagrangian simulations found a significant potential for larval exchange among the eight Adriatic–Ionian locations, supporting the hypothesis of connectivity of P. lividus populations in this area. A peculiar pattern emerged from the comparison of our results with those obtained from published P. lividus cytochrome b (cytb) sequences, the latter revealing genetic differentiation in the same geographic area despite a smaller sample size and a lower power to detect differences. The comparison with studies conducted using nuclear markers on other species with similar pelagic larval durations in the same Adriatic–Ionian locations indicates species‐specific differences in genetic connectivity patterns and warns against generalizing single‐species results to the entire community of rocky shore habitats.

Characterization of three different clusters of 18S–26S ribosomal DNA genes in the sea urchin P. lividus: Genetic and epigenetic regulation synchronous to 5S rDNA

We previously reported the characterization 5S ribosomal DNA (rDNA) clusters in the common sea urchin Paracentrotus lividus and demonstrated the presence of DNA methylation-dependent silencing of embryo specific 5S rDNA cluster in adult tissue. In this work, we show genetic and epigenetic characterization of 18S–26S rDNA clusters in this specie. The results indicate the presence of three different 18S–26S rDNA clusters with different Non-Transcribed Spacer (NTS) regions that have different chromosomal localizations. Moreover, we show that the two largest clusters are hyper-methylated in the promoter-containing NTS regions in adult tissues, as in the 5S rDNA. These findings demonstrate an analogous epigenetic regulation in small and large rDNA clusters and support the logical synchronism in building ribosomes. In fact, all the ribosomal RNA genes must be synchronously and equally transcribed to perform their unique final product.

Abundance, size composition and benthic assemblages of two Mediterranean echinoids off the Egyptian coasts: Paracentrotus lividus and Arbacia lixula

This study is concerned with the variability in abundance, size composition and benthic assemblages of two echinoid species, the common sea urchin Paracentrotus lividus (Lamarck, 1816) and black urchin Arbacia lixula (Linnaeus, 1758) in the Southeastern Mediterranean (SEM) along the coast of Alexandria, Egypt. Four seasonal trips were made during the years 2014–2015 covering 55km of the shore with depths ranging between 3 and 9m. The sea urchin species composition, density and size structure and distribution were compared. The associated macrobenthic invertebrates with prominent presence and biomass were observed as well as other benthic fauna and flora associations. The present results showed that P. lividus was the dominant echinoid spatially and temporally. A. lixula showed frequent occurrence in Sidi Bishr and Sidi Gaber stations in the spring season. The most dominant size class was the medium to large-sized classes for P. lividus and large-sized classes for A. lixula. The commercial size for the edible P. lividus represented 33% of the sampled population. Furthermore, the most dominant macrobenthic assemblages beside the echinoid population were primarily oysters, sea cucumbers, and mussels. Beside these, assemblage of seaweeds (red, green, brown and crustose algae), Porifera, Cnidaria, Crustacea, other Echinodermata, Bivalvia, Gastropoda, Tunicata, Bryozoa and Annelida were found. The present study shows that the investigated area represents stable habitats for the echinoid population with rich and diversified algal assemblages as well as other potential food resources.

The Role of Models in Science: A Multicomprehensive Experience with the Sea Urchin Paracentrotus Lividus

Model organisms are frequently used in science teaching as they provide good exemplars for students that want to understand basic biological phenomena. The common sea urchin Paracentrotus lividus is a familiar animal that students can frequently observe in nature and represents a good didactic model for teaching various biological concepts in schools. Its simple body structure and anatomy allow easily recognition of the main external and internal organs, including spines, tube feet, feeding apparatus (Aristotle's lantern), digestive tract and reproductive organs, providing several practical cues for interactive discussions on animal physiology and ecology. Additionally, this organism is an optimal model for in vitro observation of major reproductive processes, including release of gametes, fertilization and recognition of various embryonic stages. In fact, this species produces millions of spermatozoa and thousands of large, transparent eggs which can be easily collected; these can be used for in vitro fertilization and observation of basic biological processes such as mitosis, cell migration and differentiation and of early developmental stages.

Functional variants of 5S rRNA in the ribosomes of common sea urchin Paracentrotus lividus

We have previously reported a molecular and cytogenetic characterization of three different 5S rDNA clusters in the sea urchin Paracentrotus lividus; this study, performed at DNA level only, lends itself as starting point to verify that these clusters could contain transcribed genes, then, to demonstrate the presence of heterogeneity at functional RNA level, also. In the present work we report in P. lividus ribosomes the existence of several transcribed variants of the 5S rRNA and we associate all transcribed variants to the cluster to which belong.Our finding is the first demonstration of the presence of high heterogeneity in functional 5S rRNA molecules in animal ribosomes, a feature that had been considered a peculiarity of some plants.

Time and space: genetic structure of the cohorts of the common sea urchin Paracentrotus lividus in Western Mediterranean

Spatio-temporal variability in settlement and recruitment, high mortality during the first life-history stages, and selection may determine the genetic structure of cohorts of long-lived marine invertebrates at small scales. We conducted a spatial and temporal analysis of the common Mediterranean Sea urchin Paracentrotus lividus to determine the genetic structure of cohorts at different scales. In Tossa de Mar (NW Mediterranean), recruitment was followed over 5 consecutive springs (2006–2010). In spring 2008, recruits and two-year-old individuals were collected at 6 locations along East and South Iberian coasts separated from 200 to over 1,100 km. All cohorts presented a high genetic diversity based on a fragment of mtCOI. Our results showed a marked genetic homogeneity in the temporal monitoring and a low degree of spatial structure in 2006. In 2008, coupled with an abnormality in the usual circulation patterns in the area, the genetic structure of the southern populations studied changed markedly, with arrival of many private haplotypes. This fact highlights the importance of point events in renewing the genetic makeup of populations, which can only be detected through analysis of the cohort structure coupling temporal and spatial perspectives.

Microsatellite markers reveal shallow genetic differentiation between cohorts of the common sea urchin Paracentrotus lividus (Lamarck) in northwest Mediterranean

Temporal variability was studied in the common sea urchin Paracentrotus lividus through the analysis of the genetic composition of three yearly cohorts sampled over two consecutive springs in a locality in northwestern Mediterranean. Individuals were aged using growth ring patterns observed in tests and samples were genotyped for five microsatellite loci. No reduction of genetic diversity was observed relative to a sample of the adult population from the same location or within cohorts across years. F(ST )and amova results indicated that the differentiation between cohorts is rather shallow and not significant, as most variability is found within cohorts and within individuals. This mild differentiation translated into estimates of effective population size of 90-100 individuals. When the observed excess of homozygotes was taken into account, the estimate of the average number of breeders increased to c. 300 individuals. Given our restricted sampling area and the known small-scale heterogeneity in recruitment in this species, our results suggest that at stretches of a few kilometres of shoreline, large numbers of progenitors are likely to contribute to the larval pool at each reproduction event. Intercohort variation in our samples is six times smaller than spatial variation between adults of four localities in the western Mediterranean. Our results indicate that, notwithstanding the stochastic events that take place during the long planktonic phase and during the settlement and recruitment processes, reproductive success in this species is high enough to produce cohorts genetically diverse and with little differentiation between them. Further research is needed before the link between genetic structure and underlying physical and biological processes can be well established.

Isolation of nine nuclear microsatellites in the common Mediterranean sea urchin, Paracentrotus lividus (Lamarck)

Nine polymorphic microsatellite loci were isolated and characterized for the edible common sea urchin Paracentrotus lividus. Loci were obtained from two genomic libraries enriched with different di-, tri- and tetranucleotides. Most microsatellites obtained were imperfect dinucleotides. Allelic variation was screened for a total of 56 individuals from two populations from North-Western Mediterranean. Microsatellites showed a number of alleles ranging from 13 to 35. Linkage disequilibrium was not detected between any pair of loci, and all loci showed a significant departure from Hardy-Weinberg equilibrium which is not likely to be the result of null alleles, suggesting that demographic features may be acting upon this commercially interesting species.

Two markers and one history: phylogeography of the edible common sea urchin Paracentrotus lividus in the Lusitanian region

Benthic marine invertebrates with long-lived larvae are believed to have dispersal capabilities that contribute to maintaining genetic uniformity among populations over large geographical scales. However, both hydrological and biological factors may limit the actual dispersal of such larvae. We studied the population genetic structure of the edible common sea urchin Paracentrotus lividus (Lamarck, 1816), to explore its dispersal patterns in the Atlanto-Mediterranean region and, more specifically, to ascertain the role of the Strait of Gibraltar in shaping the genetic structure of this species. For this purpose, we analysed 158 individuals for the mitochondrial 16S rRNA gene and 151 of these for the nuclear single-copy intron adenine nucleotide transporter (ANT) from 16 localities from the Atlantic and Mediterranean basins, spanning over 4,000 km. Mitochondrial 16S rRNA shows higher genetic diversity in the Mediterranean than in the Atlantic and reveals a sharp break between the populations of both basins, probably as a consequence of the barrier imposed by the Almería–Orán hydrological front, situated east of the Strait of Gibraltar. Both markers suggest that a recent population expansion has taken place in both basins, most probably following the Messinian salinity crisis.