Common Habitat Research Articles

Continuous measurement of red wood ant (Formica rufa) outdoor behaviour using passive acoustic monitoring

Ants serve as ecosystem engineers that maintain important ecological processes within forests. Given their ecological importance, it is a clear scientific shortcoming that we lack non-invasive methods to survey their behaviour inside common opaque habitats such as mounds, litter, and soil. In this study, we assess if acoustic signals from red wood ant (Formica rufa) mounds are useful to infer temporal changes in ant activity within forested ecosystems. We found that acoustic indices used previously as a proxy for soil fauna in soil ecological studies (Acoustic Complexity Index, Bioacoustic Index) can indeed separate sounds generated by the ant's daily routines (biophony) from other forest sounds. Yet, we also show that these indices are problematic proxies for soil diversity as they increase not only due to an increased number of species but also due to an increased number of the same species. Acoustic measures that incorporated the strength of acoustic signals, Average Power Density (APD) and Peak Power Density (PPD) also increased with increasing ant abundance and constituted the conceptually best proxy for ant activity. For example, the PPD could i) track diurnal changes in Formica rufa activity with a high temporal resolution (minutes) and ii) detect altered behavioural responses to temperature changes. We conclude that microphones detecting biophony can provide high-resolution information about in situ ant behaviours in forested ecosystems. Thus, passive acoustics monitoring offers a promising avenue as a non-invasive monitoring tool for soil macrofauna studies.

Variation of parental and chick diet in opportunistic insectivorous European Bee-eaters

Insectivorous Palaearctic bird species associated with open habitats rely on high prey abundances, which are currently declining due to habitat loss and intensive agricultural practices. The European Bee-eater (Merops apiaster) is an opportunistic insectivore of open habitats, preying mainly on medium to large-sized flying insects. Its diet composition received some attention in the past, but the current variation in diet composition of birds breeding across different habitats, and between adults and chicks remains poorly known. In this study, we determine variation in bee-eaters’ diet in colonies located in five common habitats at the Iberian Peninsula. We also assess differences in the diet composition of chicks and adults and investigate seasonal diet selectivity of adults. Finally, we explore the variability in the size of prey provided to chicks throughout their growth period. Hymenoptera and Coleoptera were the most important groups for bee-eaters, with adults and chicks consuming 58.8% and 64.1% of hymenopterans and 37.6% and 28.6% of coleopterans, respectively. The proportion of Hymenoptera (42.3–55.7%) and Coleoptera (43.3–53.5%) in the diet was similar in colonies in pasture and oak habitats. But Hymenoptera dominated (83.8% and 95.7%) in meadow and mixed forest colonies. Despite being a generally opportunistic predator, adult bee-eaters provide their progeny with an increasing proportion of larger insects through chick development. Moreover, they equally take Hymenoptera and Coleoptera for themselves and their chicks, even when the abundance of these insects decreases seasonally. Overall, these results suggest that local prey availability associated with specific habitats influences diet composition and that regional declines in certain groups may, therefore, affect insectivore species differently according to their dietary and habitat preferences.

High-quality genome of a novel Thermosynechococcaceae species from Namibia and characterization of its protein expression patterns at elevated temperatures.

Thermophilic cyanobacteria thrive in extreme environments, making their thermoresistant enzymes valuable for industrial applications. Common habitats include hot springs, which act as evolutionary accelerators for speciation due to geographical isolation. The family Thermosynechococcaceae comprises thermophilic cyanobacteria known for their ability to thrive in high-temperature environments. These bacteria are notable for their photosynthetic capabilities, significantly contributing to primary production in extreme habitats. Members of Thermosynechococcaceae exhibit unique adaptations that allow them to perform photosynthesis efficiently at elevated temperatures, making them subjects of interest for studies on microbial ecology, evolution, and potential biotechnological applications. In this study, the genome of a thermophilic cyanobacterium, isolated from a hot spring near Okahandja in Namibia, was sequenced using a PacBio Sequel IIe long-read platform. Cultivations were performed at elevated temperatures of 40, 50, and 55°C, followed by proteome analyses based on the annotated genome. Phylogenetic investigations, informed by the 16S rRNA gene and aligned nucleotide identity (ANI), suggest that the novel cyanobacterium is a member of the family Thermosynechococcaceae. Furthermore, the new species was assigned to a separate branch, potentially representing a novel genus. Whole-genome alignments supported this finding, revealing few conserved regions and multiple genetic rearrangement events. Additionally, 129 proteins were identified as differentially expressed in a temperature-dependent manner. The results of this study broaden our understanding of cyanobacterial adaptation to extreme environments, providing a novel high-quality genome of Thermosynechococcaceae cyanobacterium sp. Okahandja and several promising candidate proteins for expression and characterization studies.

Larval habitat diversity, physicochemical characterization and their effect on the density of larval malaria vectors in the city of Accra, Ghana.

Malaria is more prevalent in rural areas due to fewer mosquito breeding habitats in urban settings. However, urban factors such as irrigated farming, open sewers, and discarded containers create mosquito breeding sites. This study investigates the diversity and distribution of larval habitats and the impact of physicochemical characteristics on the presence and density of Anopheles gambiae s.l. larvae in Accra, Ghana. Larval surveys and collections were conducted at fifteen locations in Accra, divided into five categories: Irrigated Urban Farming (IUF), Lower Socioeconomic Status (LS), Middle Socioeconomic Status (MS), High Socioeconomic Status (HS), and Peri-urban (PU) areas. Physicochemical parameters were measured, and species identification was performed using morphological and molecular methods. A total of 727 breeding habitats were identified, with 65.34% (475/727) positive for Anopheles larvae. Drainage ditches were the most common habitat type (48.21%, 229/475). The highest abundance of An. gambiae s.l. was found in IUF sites (6,244/22,919), especially during the rainy season (77.01%, 17,650/22,919; R2 = 3.46, P = 0.000). Polluted habitats, including household effluents, had higher ammonium levels (3.4 mg/L NH -N) compared to unpolluted ones (1.3 mg/L NH -N). Other distinguishing parameters included dissolved oxygen (34% vs 52.9%), conductivity (5106 μS/cm vs 2049 μS/cm), and total dissolved solids (3181 mg/L vs 1255 mg/L). The predominant malaria vector was An. coluzzii(54.4%, 368/677). Additionally, the invasive An. stephensi, previously unreported in Ghana, was detected. Malaria vectors breed in diverse and often polluted urban habitats, with high larval densities in urban agricultural areas. The detection of the invasive An. Stephensi highlights the need for continuous monitoring and vector control strategies in urban settings.

Potential impacts of climate change on cephalopods in a highly productive region (Northwest Pacific): Habitat suitability and management

Cephalopods occupy a mid-trophic level in marine ecosystems and are vital both ecologically and as fishery resources. However, under the pressure of climate change and fishing, the sustainability of cephalopod resources requires reasonable management. This study aims to study climate change and fishing impacts on the common economic cephalopod species habitats using species distribution models. We take the northwest Pacific Ocean region as an example, which stands out as a significant region for cephalopod production around the world. Results found that the habitats of cephalopods are moving to higher latitudes or deeper waters (Bohai Sea, mid-bottom Yellow Sea, and the Okinawa Trough waters) under climate change. Additionally, these regions are currently under lower fishing pressure, which suggests that species migration might mitigate the effects of warming and fishing. This study provides the large-scale assessment of the distribution range of cephalopods affected by climate change coping with fishing pressure in the northwest Pacific Ocean. By identifying climate refuges and key fishing grounds, we underscore the importance of this information for managing cephalopod resources in the context of climate adaptation and sustainable fishing practices.

Within-host adaptive speciation of commensal yoyo clams leads to ecological exclusion, not co-existence.

Symbionts dominate planetary diversity and three primary symbiont diversification processes have been proposed: co-speciation with hosts, speciation by host-switching, and within-host speciation. The last mechanism is prevalent among members of an extraordinary marine symbiosis in the Indian River Lagoon, Florida, composed of a host mantis shrimp, Lysiosquilla scabricauda, and seven host-specific commensal vasconielline "yoyo" clams (Galeommatoidea) that collectively occupy two distinct niches: burrow-wall-attached, and host-attached/ectocommensal. This within-host symbiont radiation provides a natural experiment to test how symbiont coexistence patterns are regulated in a common ancestral habitat. The competitive exclusion principle predicts that sister taxa produced by adaptive speciation (with distinct morphologies and within-burrow niches) are most likely to coexist whereas the neutral theory predicts no difference among adaptive and non-adaptive sister taxa co-occurrence. To test these predictions, we engaged in (1) field-censusing commensal species assemblages; (2) trophic niche analyses; (3) laboratory behavioral observations. Although predicted by both models, the field census found no mixed-niche commensal assemblages: multi-species burrows were exclusively composed of burrow-wall commensals. Their co-occurrence matched random assembly process expectations, but presence of the single ectocommensal species had a highly significant negative effect on recruitment of all burrow-wall commensal species (P<0.001), including on its burrow-wall commensal sister species (P < 0.001). Our stable isotope data indicated that commensals are suspension feeders and that co-occurring burrow-wall commensals may exhibit trophic niche differentiation. The artificial burrow behavioral experiment yielded no evidence of spatial segregation among burrow-wall commensals, and it was terminated by a sudden breakdown of the host-commensal relationship resulting in a mass mortality of all commensals unattached to the host. This study system appears to contain two distinct, superimposed patterns of commensal distribution: (1) all burrow-wall commensal species; (2) the ectocommensal species. Burrow-wall commensals (the plesiomorphic condition) broadly adhere to neutral theory expectations of species assembly but the adaptive evolution of ectocommensalism has apparently led to ecological exclusion rather than coexistence, an inverse outcome of theoretical expectations. The ecological factors regulating the observed burrow-wall/ectocommensal exclusion are currently obscure but potentially include differential recruitment to host burrows and/or differential survival in "mixed" burrow assemblages, the latter potentially due to changes in host predatory behavior. Resampling host burrows during commensal recruitment peak periods and tracking burrow-wall commensal survival in host burrows with and without added ectocommensals could resolve this outstanding issue.

Ubiquity of methanogenic archaea in the trunk of coniferous and broadleaved tree species in a mountain forest.

Wetwood of living trees is a habitat of methanogenic archaea, but the ubiquity of methanogenic archaea in the trunk of various trees has not been revealed. The present study analysed methanogenic archaeal communities inside coniferous and broadleaved trees in a cold temperate mountain forest by culture-dependent or independent techniques. Heartwood and sapwood segments were obtained from the trunk of seven tree species, Cryptomeria japonica, Quercus crispula, Fraxinus mandshurica, Acer pictum, Aesculus turbinata, Magnolia obovata, and Populus tremula. Amplicon sequencing analysis of 16S rRNA genes showed that Methanobacteriaceae predominated the archaeal communities and Methanomassiliicoccaceae also inhabited some trees. Real-time PCR analysis detected methanogenic archaeal mcrA genes from all the tree species, with a maximum of 107copiesg-1 dry wood. Digital PCR analysis also detected mcrA genes derived from Methanobacterium spp. and Methanobrevibacter spp. from several samples, with a maximum of 105 and 104copiesg-1 dry wood. The enumeration by the most probable number method demonstrated the inhabitation of viable methanogenic archaea inside the trees; 106cellsg-1 dry wood was enumerated from a heartwood sample of C. japonica. Methanogenic archaea related to Methanobacterium beijingense were cultivated from a heartwood sample of Q. crispula and F. mandshurica. The present study demonstrated that the inside of various trees is a common habitat for methanogenic archaeal communities and a potential source of methane in forest ecosystems.

The morphological diagnosis of 2 economically important subterranean termites in Western Indonesia, Coptotermes curvignathus and Coptotermes gestroi (Blattodea, Rhinotermitidae).

In Indonesia, the control of Coptotermes curvignathus populations as living tree termite pests has been carried out since the early 20th century. Recently, C. curvignathus has been considered the main termite pest and designated as the only species model for wood and wood products resistance tests against subterranean termite attack testing protocol in the Indonesian National Standard (SNI). However, the species distribution range of C. curvignathus has been long questioned as Coptotermes gestroi is commonly reported as a species found in urban areas of Southeast Asian region, particularly in Indonesia. One of the reasons for the species distribution discrepancies is the lack of morphological markers to distinguish both species in the field. Thus, limiting the field inspection effectiveness in termite pest management in Indonesia. This study reexamined and clarified the morphological differences between C. curvignathus and C. gestroi, based on soldier caste. The head shape, mandible shape, and distribution of genal setae on the ventro-anterior head part and pronotum marked the difference between the 2 species. These current results support previous findings of C. curvignathus as the forest dweller while clarifying C. gestroi as the common urban dweller in Indonesia. The putative benefit of morphological features related to the head, mandible, and setae distribution to the defensive adaptation in their common habitat was discussed. Ultimately, the inclusion of C. gestroi into the Indonesian National Standard (SNI) as an alternative species for efficacy tests against subterranean termites is highly recommended.

Length-weight relationship, condition factor, and diet analysis of thresher sharks (Family: Alopiidae) along the southern coast of India

Sharks are fascinating groups of elasmobranchs that are consistently threatened by commercial tuna fishing operations, as they share a common habitat with most scombrids. This raises ecological concerns to explore the vulnerability of the species in its prevailing ecosystem. The length-weight relationship of three known species of thresher sharks viz, the common thresher (Alopias vulpinus), bigeye thresher (A. superciliosus), and pelagic thresher (A. pelagicus) were estimated based on 771 specimens landed as bycatches from the commercial tuna gillnetter and multi-gear utilizing boats (MGUB) off Bay of Bengal between June 2022 and November 2023. The fork length (FL) ranged from a minimum of 51 cm to a maximum of 288 cm. The dominant fork length class for A. vulpinus, A. superciliosus, and A. pelagicus were 101–120, 101–140 cm, and 61–80 cm respectively. The estimated slope (b) values in the range between 2.48 and 2.66 reveal negative allometry for all three species. The coefficient of determination was highly significant with r2 values of 0.98–0.99. The male-to-female ratio for A. vulpinus (1.03:1) and A. superciliosus (1.07:1), were male-biased except for A. pelagicus, (1:1). We also present data on the foraging components of the bigeye thresher shark that typically comprised teleosts and cephalopods, with occasional crustacean prey. Biological data collection and constant surveillance would help better understand the population structure of this iconic marine species and preserve them from overexploitation.

Catalogue of Endomychidae (Insecta, Coleoptera) family specimens deposited in the State Museum of Natural History NASU, Lviv, Ukraine

The family Endomychidae is a moderately large group of small to medium-sized beetles with worldwide distribution and maximum diversity in tropical and subtropical regions, which includes about 1,600 species in 90 genera, 9 subfamilies (Shockley et al., 2009; Robertson et al., 2015). Of these, 7 species are known from the territory of Ukraine, of which 5 species occur in the Ukrainian Carpathian region (Nowicki, 1865; Roubal, 1936, Mateleshko, 2002, 2005, 2009; Mateleshko &amp; Chumak, 2006; Mateleshko &amp; Roshko, 2006; Mateleshko &amp; Lovas, 2010; Chumak et al., 2015; Koval, et al., 2018; Diedus et al., 2021) and three species are known from the Sumy, Kharkiv, Kherson provinces and the Crimean Autonomous Republic (Drogvalenko, 1999). Representatives of the family are mainly mycophagous. The most common habitats are fungi, rotten wood and fungus-infested bark. Many species live in leaf litter and decaying plant debris, where they feed on mold and fungi. The collection of the State Museum of Natural History, National Academy of Sciences of Ukraine (SMNH) presents 58 specimens of the family Endomychidae, belonging to 4 species and 4 genera, as follows: Dapsa denticollis (Germar, 1817) – 3 spec., Endomychus coccineus (Linnaeus, 1758) – 29 spec., Lycoperdina succincta (Linnaeus, 1767) – 21 spec., Mycetina cruciata (Schaller, 1783) – 5 spec. The illustrated catalogue of these species is given below, the species being listed in an alphabet order. The collection material has originated from the western part of Ukraine and southern part of Poland and was collected during the late 19th and early 20th centuries. Most of the material was collected from the western part of Ukraine, and is presented in the collection by three species: D. denticollis, E. coccineus and L. succincta from Roztochchia georegion (Lviv (Holosko, Kryvchytsi, Znesinnia, Snopkiv), Yamelnia, Ivano-Frankove); E. coccineus from Male Polissia (Radvantsi); two species from Opillia – L. succincta (Bartativ, Zubra) and E. coccineus (Prybyn). Only one species, E. coccineus, is known from the Cisparpathian Upland (Kolomyia, Sadzhawka) where it was collected in early 20th century (15.06.1902; 23.05.1901). Regarding the material collected from the territory of Poland, 4 specimens of two species are available in the SMNH collection: E. coccineus (Kraków, Rabka-Zdrój, Szymbart) and L succincta (Sztutowo). In addition to the main museum collection, the four above-mentioned species are contained in the collection of A. Stöckl: one spec. D. denticollis from Serbia, collected by Reitter; 5 spec. E. coccineus from the western part of Ukraine (Lviv, Riasne, Ivano-Frankove); 3 spec. L. succincta: one spec. from Poland (Konskowola), two – from Ukraine (Ivano-Frankove, Lviv); and 2 spec. of M. cruciata collected in Ukraine (Pistyn). Other specimens of this collection lack information on the collectors.

Evaluation of extinction risk for stream fishes within an urban riverscape using population viability analysis

Abstract1. The Santa Ana River in the Los Angeles region of California demonstrates common habitat degradation symptoms that are characteristic of the urban stream syndrome. These impacts have altered the Santa Ana River community structure, with few species as impacted as the native Santa Ana sucker (sucker; Pantosteus santaanae). 2. Consequently, a recovery plan developed for sucker identified the need for a population viability analysis (PVA) to assess sucker extirpation risk. However, PVAs can be data‐intensive and are subject to several sources of bias when standardized protocols are absent. 3. More than 20 years of sucker and arroyo chub (chub; Gila orcuttii) surveys using different methods were compiled to build an integrated hierarchical multi‐population PVA to estimate trends in abundance and extirpation probability of these native fishes from the Santa Ana River. 4. PVA modelling indicated similar patterns in sucker and chub abundance along the Santa Ana River, with the highest abundance of both species in the upper regions of the river during the early 2000s and downstream in recent years (2018–2022). Extirpation risk was estimated to be greatest near wastewater treatment facilities, where native fish abundance estimates have been zero since 2018. Extirpation risk was lower downstream of the wastewater treatment facilities for both species, although extinction risk was higher for sucker than chub throughout the river. 5. As the model evolves and more data are collected, the PVA could be used to assess the effects of various management actions, such as non‐native predator removals and native fish re‐introductions, on sucker and chub persistence.

Ecological divergence despite common mating sites: Genotypes and symbiotypes shed light on cryptic diversity in the black bean aphid species complex.

Different host plants represent ecologically dissimilar environments for phytophagous insects. The resulting divergent selection can promote the evolution of specialized host races, provided that gene flow is reduced between populations feeding on different plants. In black bean aphids belonging to the Aphis fabae complex, several morphologically cryptic taxa have been described based on their distinct host plant preferences. However, host choice and mate choice are largely decoupled in these insects: they are host-alternating and migrate between specific summer host plants and shared winter hosts, with mating occurring on the shared hosts. This provides a yearly opportunity for gene flow among aphids using different summer hosts, and raises the question if and to what extent the ecologically defined taxa are reproductively isolated. Here, we analyzed a geographically and temporally structured dataset of microsatellite genotypes from A. fabae that were mostly collected from their main winter host Euonymus europaeus, and additionally from another winter host and fourteen summer hosts. The data reveals multiple, strongly differentiated genetic clusters, which differ in their association with different summer and winter hosts. The clusters also differ in the frequency of infection with two heritable, facultative endosymbionts, separately hinting at reproductive isolation and divergent ecological selection. Furthermore, we found evidence for occasional hybridization among genetic clusters, with putative hybrids collected more frequently in spring than in autumn. This suggests that similar to host races in other phytophagous insects, both prezygotic and postzygotic barriers including selection against hybrids maintain genetic differentiation among A. fabae taxa, despite a common mating habitat.

Phylogeographic Substructuring in the Southernmost Refugium of the European Common Frog Rana temporaria.

Rana temporaria is one of the most widespread Palearctic brown frogs. We aimed to clarify distribution pattern of two main genetic clades in the understudied Balkan peninsula by using 16SrRNA and MT-CYTB sequences, already widely applied in analyses of populations from other parts of Europe, while focusing on the broad area along the Morava river (central Balkans) as a known gap in the species distribution. Additionally, we were interested in revealing the extent of haplotype diversity within the main genetic clades in the Balkans, particularly around the supposed suture zone. The results revealed a suture zone between the Western and Eastern Clades in the central part of the Balkan Peninsula. This indicated the existence of a historical barrier between the Balkan Mountain Belt and geographically close mountains surrounding the Vlasina Plateau (Rhodope/Serbian-Macedonian Massif). The overall observed haplotype diversity in populations of R. temporaria from the Balkan Peninsula seems high. Harboring both main genetic clades of R. temporaria qualifies the Balkan Peninsula as another important center of species' genetic diversity, as well as rich in unique haplotypes. This points out the necessity of applying conservation measures focused on the common European frog populations and habitats in this part of the species' distribution area.

Diversity and distribution of chironomids in Central European ponds.

Ponds are common freshwater habitats in the European landscape that substantially contribute to local and regional biodiversity. Chironomids often dominate invertebrate communities in ponds but are usually disregarded in ecological studies due to relatively complicated taxonomy and identification issues. We present a comprehensive overview of the chironomid diversity in 246 ponds spanning a wide range of conditions extending from the Pannonian Plain to the Carpathians. Altogether, we recorded 225 taxa including 192 species from six subfamilies (Podonominae, Tanypodinae, Diamesinae, Prodiamesinae, Orthocladiinae and Chironominae). However, the chironomid taxa inventory is far from complete and about 16% of the total diversity of pond-dwelling chironomids remains undetected. Chironomid alpha diversity showed a significant unimodal pattern along the elevation gradient with the highest number of taxa per pond expected around 790 m a.s.l. Gamma diversity also peaked in mid-elevations (600-800 m), and the common chironomid taxa partitioned the 2100-m long altitudinal gradient relatively evenly. The heterogeneity of chironomid communities among ponds measured as beta diversity was significantly higher in elevations below 800 m. Temperature and the proportion of surrounding forests significantly influenced alpha diversity of chironomid communities, while urban land cover and pond size had no significant effect. Ponds with a mean annual air temperature of approximately 4.8°C and a low proportion of surrounding forests are expected to harbour the most diverse chironomid communities. Our study showed that chironomids represent a very diverse and often exceptionally rich group of pond-dwelling macroinvertebrates. Given the high diversity and broad range of occupied niches, chironomids should not be overlooked in pond ecology studies. On the contrary, they should be considered a potential model group.

Soil Bacterial Community of Medicinal Plant Rhizosphere in a Mediterranean System

Several attempts have been made to evaluate the abundance and distribution of the bacterial community in the rhizosphere of medicinal plants. Many describe information based on an estimation of the community structure and the effects of plant cover in determining microbial community composition. The ability of plants to specifically shape their microbial community in general and medicinal plants in particular is largely unknown. With the arrival of molecular biology, understanding the microbial community’s composition, diversity, and function became possible. We hypothesized that microbial communities associated with medicinal shrubs would differ from each other. To test this hypothesis, we characterized the soil microbial composition under each of five Mediterranean medicinal plants, differentiated by their medicinal use and ecophysiological adaptation, namely, Salvia fruticosa, Pistacia lentiscus, Myrtus communis, Origanum syriacum, and Teucrium capitatum, and an open-space bare soil between the plants, inhabiting natural ecosystems characterized by similar climatic conditions typical of a Mediterranean environment. The results demonstrated the importance of plant ecophysiological adaptations, which play an important role in determining microbial community composition and functional diversity. The intensity of a plant’s response to its surroundings can have either positive or negative effects that will determine the microbial community composition and interactions among the belowground parts. A total of 11 phyla, 21 orders, and 409 genera were found in the soil rhizosphere in the vicinity of the four plants and open space samples. The distinguishing attributes of each shrub trigger and stimulate the microbial community’s rhizosphere. This results in distinct patterns of bacterial diversity and functionality between the different shrubs and the control. The rhizosphere bacterial community composition differed between the plants in a PERMANOVA test, but there was little difference in terms of phyla and order relative abundances. This study shows how five medicinal plants, coexisting in a common habitat, impact the bacterial community. The noticeable shift in bacterial composition further supports our discovery that root exudates effectively govern the makeup of soil bacterial communities.

Exchange or Eliminate: The Secrets of Algal-Bacterial Relationships.

Algae and bacteria have co-occurred and coevolved in common habitats for hundreds of millions of years, fostering specific associations and interactions such as mutualism or antagonism. These interactions are shaped through exchanges of primary and secondary metabolites provided by one of the partners. Metabolites, such as N-sources or vitamins, can be beneficial to the partner and they may be assimilated through chemotaxis towards the partner producing these metabolites. Other metabolites, especially many natural products synthesized by bacteria, can act as toxins and damage or kill the partner. For instance, the green microalga Chlamydomonas reinhardtii establishes a mutualistic partnership with a Methylobacterium, in stark contrast to its antagonistic relationship with the toxin producing Pseudomonas protegens. In other cases, as with a coccolithophore haptophyte alga and a Phaeobacter bacterium, the same alga and bacterium can even be subject to both processes, depending on the secreted bacterial and algal metabolites. Some bacteria also influence algal morphology by producing specific metabolites and micronutrients, as is observed in some macroalgae. This review focuses on algal-bacterial interactions with micro- and macroalgal models from marine, freshwater, and terrestrial environments and summarizes the advances in the field. It also highlights the effects of temperature on these interactions as it is presently known.

ANALISIS KANDUNGAN PROTEIN DAN LEMAK PADA TERIPANG PASIR (Holothuria scabra) YANG DIPEROLEH DARI PERAIRAN DESA SULI DAN APLIKASINYA KEPADA MASYARAKAT MELALUI PENYULUHAN

Background: One kind of animals with spines are sea cucumbers. Sandy waters, rocky or muddy beaches, and coral reefs are common habitats for these species. Clear, clean waters with a fine sandy bottom, away from pounding waves, are ideal for the growth of sand sea cucumbers. Sea cucumbers are found in great number across Maluku. One such location is the waters surrounding Suli village, where sand sea cucumbers, or Holoturia scabra, are particularly common. Methods: Descriptive approaches are used in this study. The laboratory study findings served as the basis for the data sources. Results: In samples of sand sea cucumbers (Holothuria scabra), the protein yield was greater than the fat content. Conclusion: The protein content is 15.3544 and the fat content is 0.1816. This protein level figure is still below the maximum protein threshold of 72.93%.

Çeşitli Kaynaklardan ve Ticari Gıda Takviyelerinden İzole Edilen Bacillus Türlerinin Bazı Probiyotik Özelliklerinin Karşılaştırmalı Değerlendirilmesi

Bacillus species are gram-positive, aerobic, peritrically flagellated and endospore-forming bacteria. They can be found everywhere in the environment, especially in soil (its common habitat), water, dust or in the air. Probiotics, which have beneficial health effects, constitute an important group of Bacillus species. This study aimed to isolate Bacillus from various sources, identify it molecularly and determine its probiotic properties.For this purpose, eight Bacillus subtilis, Bacillus coagulans and Bacillus clausii strains among 58 isolates from fish intestine, soil, ripened cheese and commercial probiotic supplements were identified and their probiotic properties were characterized. Firstly, Bacillus strains were molecularly identified by 16S rRNA PCR analysis. The growth of Bacillus isolates at various temperatures, salt concentrations, and pH levels, as well as tests for esculin hydrolysis, starch hydrolysis, nitrate reduction, and gas generation from glucose, were all investigated to assess the isolates' physiological and biochemical characteristics. In terms of probiotic potential of Bacillus isolates; tolerance of bile salt, cell surface hydrophobicity, auto aggregation, antibiotic susceptibility tests were conducted. In all analyses, strains obtained from food supplements showed high levels of hydrophobicity and auto-aggregation properties, and the highest values following these strains were observed in Bacillus subtilis strains (F1 and S2) isolated from fish intestines and soil, respectively. All strains showed strong growth features in bile salt conditions. It has been determined that antibiotic sensitivity varies depending on the strain. Overall, high sensitivity to tetracycline has been observed. In summary, this study revealed the potential probiotic properties of Bacillus isolates obtained from different sources. The study also compared these probiotic properties with probiotic Bacillus strains isolated from food supplements.

Living in the cracks: Two novel genera of Variosea (Amoebozoa) discovered on an urban sidewalk.

Biological soil crusts represent a rich habitat for diverse and complex eukaryotic microbial communities. A unique but extremely common habitat is the urban sidewalk and its cracks that collect detritus. While these habitats are ubiquitous across the globe, little to no work has been conducted to characterize protists found there. Amoeboid protists are major predators of bacteria and other microbial eukaryotes in these microhabitats and therefore play a substantial ecological role. From sidewalk crack soil crusts, we have isolated three naked amoebae with finely tapered subpseudopodia, and a simple life cycle consisting of a trophic amoeba and a cyst stage. Using a holistic approach including light, electron, and fluorescence microscopy as well as phylogenetics using the ribosomal small subunit rRNA gene and phylogenomics using 230 nuclear genes, we find that these amoeboid organisms fail to match any previously described eukaryote genus. However, we determined the amoebae belong to the amoebozoan lineage Variosea based on phylogenetics. The molecular analyses place our isolates in two novel genera forming a grade at the base of the variosean group Protosteliida. These three novel varioseans among two novel genera and species are herein named "Kanabo kenzan" and "Parakanabo toge."

Differential cell size reduction of two sympatric Epithemia (Bacillariophyta) taxa in Nakaikemi Wetland, Japan

SUMMARYWe observed contrasting temporal changes in cell size between two Epithemia taxa. The life cycle of diatoms is closely linked to their cell size, with a gradual decrease during the vegetative stage and a recovery through sexual reproduction. Sexual reproduction is triggered when cells become smaller than a species‐specific size threshold and receive species‐specific environmental cues. Few studies have documented the life cycles and frequency of sexual reproduction in diatoms, combining field observations and laboratory culture. We collected two Epithemia taxa, Epithemia gibba var. ventricosa and Epithemia sp. from a pond in Nakaikemi Wetland, and measured their valve lengths monthly for almost 3 years. Additionally, we established cultures of both taxa to examine the rates of cell size reduction, which affect the duration of the vegetative stage. In the field, E. gibba var. ventricosa exhibited a wide range of cell sizes and signs of size recovery. Furthermore, the cultures of this taxon showed a clear decrease in cell size through division, suggesting that sexual reproduction is required for size recovery. On the other hand, Epithemia sp. showed no obvious change in cell size both in the field and in the laboratory. This suggests that either sexual reproduction is not necessary for this taxon to maintain its population or their life cycle extends over several years to several decades. Thus, our findings reveal congeneric taxa sharing a common habitat and substratum, yet exhibiting distinct sexual and asexual strategies. Furthermore, we question the validity of taxonomic classifications previously assigned to these diatoms based on the range of morphological characteristics observed in the present study.