Cultivars Of Coffea Arabica Research Articles

Plant Morphological and Leaf Anatomical Traits in Coffea arabica L. Cultivars Cropped in Gorongosa Mountain, Mozambique

Studies on the genetic diversity of coffee trees are important, considering their role in the maximization of productivity and quality. However, the success of a breeding program depends on the existence of genetic variability in the population under study. Our study aimed to evaluate the genetic diversity of the morpho-agronomic and anatomical leaf traits of different cultivars of Coffea arabica grown in the Gorongosa mountain region, in the area of Gorongosa National Park, Mozambique. The experiment assessed nine coffee cultivars based on their morpho-agronomic and anatomical traits. The plagiotropic branch diameter, leaf dry mass, leaf mass per area, number of epidermal cells + stomata, and stomatal form indicated differences among the studied cultivars. Among the nine C. arabica cultivars grown in the mountainous region of Gorongosa National Park, Mozambique, low genetic variability in morpho-agronomic traits was detected, while the genetic variability in leaf anatomical traits was higher. The nine cultivars were segregated into two groups, one consisting of Catucaí Amarelo 2SL and Catuaí Vermelho IAC 81, and the second consisting of Catuaí Amarelo IAC 39, Catucaí Vermelho 19/8, Acauã, Catucaí 785-15, Costa Rica, Catimor 128, and Catuaí Vermelho IAC 44. The cultivar segregation into the two groups indicated that the morpho-anatomical traits can be considered during the selection stages in breeding programs.

A voltammetric peptide biosensor for Cu2+ metal ion quantification in coffee seeds

A prion-derived copper(II)-binding peptide was assembled onto a gold electrode for the building of a voltammetric biosensor for measuring the Cu2+ metal ion in biological samples. The chosen sequence was H-CVNITKQHTVTTTT-NH2, with an appended cysteine residue for binding to the gold surface as a self-assembled monolayer and a histidine residue as the anchorage point for copper(II) complexation. The biosensor showed a linear range of 10−7 to 10−6 M with an 8.0 × 10−8 M detection limit and a 1.0 × 10−7 M quantification limit, with good precision, trueness, and absence of matrix effect. The quantification of Cu2+ was performed in the presence of other transition metal ions, such as Zn2+, Cd2+, Fe2+, or Ni2+, which indicates the excellent selectivity of the biosensor. When the modified electrode was applied for measuring copper(II) in calcined coffee seeds, a difference in copper amount was observed between two Coffea arabica cultivars that were submitted to a treatment with a copper-based antifungal, showing the applicability of the biosensor in the agricultural field.

Inclusion of autochthonous and allochthonous microbial starters in wet fermentation processes of Coffea arabica L.

All around the world, specialty coffees submitted to fermentation gain economic prominence in the coffee trading sector. This study used two cultivars of Coffea arabica L. growth by Agência Paulista de Tecnologia dos Agronegócios (APTA) on Marilia region (midwest region of São Paulo state, Brazil): cultivar yellow Topázio MG 1190 (YTPMG) and cultivar red Catuai IAC 144 (RCIAC). Both cultivars were submitted to wet fermentation processes in order to: 1) observe the influence of starter cultures and 2) to describe their microbiological and sensorial performances. Sensorial findings were respectively compared to their non-fermented and naturally fermented samples. Equal portions of YTPMG and RCIAC cherries were distributed into different buckets containing 20 L of potable water each, leading to two experiments with 5 treatments, of which T1 was natural fermentation and the others received different combinations of autochthonous or allochthonous yeasts, besides species of commercial lactic bacteria. Laboratorial evaluation included: pH, temperature, soluble solids and microbiological analysis. Sensorial analyses were conducted by experts and Q-graders. The sensory data were submitted to statistical analysis. After 46 h under wet fermentation, the counts of “good” micro-organisms (M.O.) enhanced (yeasts and lactic bacteria) and the “bad” M.O. reduced (enterobacteria), resulting in differentiated aroma among the coffees treatments. Lactic bacteria starters (SACCO Brasil) stimulated yeasts growth during fermentation, while Lactobacillus plantarum (LEMA) inhibited. All the fermented coffee were graded as specialty coffees, reaching more than 80 points, and the highest notes referred to the treatments that included lactic bacteria starters. YTPMG had better cupping notes than RCIAC. Cupping notes were lower than 80 for all non-fermented coffees, indicating that the technology of controlled fermentation including starter cultures is able to ensure exquisite sensorial values and a better placing in the highly competitive market.

Proteomic analysis of higher & lower altitude cultivars of Coffea arabica reveals differences related to environmental adaptations and coffee bean flavour.

Coffee ranks among the most popular beverages worldwide and is an important commodity in developing nations. While coffee beans harvested from Coffea arabica are considered to have a superior rich and balanced flavour, they are susceptible to disease and climatic variables like temperature, precipitation, and oxygen availability, each of which varies with altitude. We performed a comprehensive proteomic comparison of two C. arabica cultivars, the high-altitude Rwanda Shyira (RS) and the lower-altitude Brazil Flor de Ipe (BFDI), using liquid chromatography MS/MS analysis. Five of the identified 531 proteins exhibited statistically significant differences in expressional intensity between the two cultivars. These differences may correspond to bitter flavonoid concentrations along with adaptations to cold, hypoxic, and disease stressors at different altitudes and geographic niches. These substantial proteomic differences identified between these elevations provide a greater understanding of the effects of altitude on the C. arabica plant and its coffee, which has implications for the global market.

The mycorrhizal root-shoot axis elicits Coffea arabica growth under low phosphate conditions.

Coffee is one of the most traded commodities world-wide. As with 70% of land plants, coffee is associated with arbuscular mycorrhizal (AM) fungi, but the molecular bases of this interaction are unknown. We studied the mycorrhizal phenotype of two commercially important Coffea arabica cultivars ('Typica National' and 'Catimor Amarillo'), upon Funnelliformis mosseae colonisation grown under phosphorus limitation, using an integrated functional approach based on multi-omics, physiology and biochemistry. The two cultivars revealed a strong biomass increase upon mycorrhization, even at low level of fungal colonisation, improving photosynthetic efficiency and plant nutrition. The more important iconic markers of AM symbiosis were activated: We detected two gene copies of AM-inducible phosphate (Pt4), ammonium (AM2) and nitrate (NPF4.5) transporters, which were identified as belonging to the C. arabica parental species (C. canephora and C. eugenioides) with both copies being upregulated. Transcriptomics data were confirmed by ions and metabolomics analyses, which highlighted an increased amount of glucose, fructose and flavonoid glycosides. In conclusion, both coffee cultivars revealed a high responsiveness to the AM fungus along their root-shoot axis, showing a clear-cut re-organisation of the major metabolic pathways, which involve nutrient acquisition, carbon fixation, and primary and secondary metabolism.

Diversity in Coffea arabica Cultivars in the Mountains of Gorongosa National Park, Mozambique, Regarding Bean and Leaf Nutrient Accumulation and Physical Fruit Traits

Genetic characteristics and their interaction with environmental conditions, including nutritional management, determine coffee productivity and quality. The objective of this study was to evaluate fruit traits and nutrient accumulation in the fruit, husk, and bean, as well as in the leaves of different Coffea arabica cultivars cropped in the Gorongosa National Park, Mozambique. The experiment evaluated nine coffee cultivars in a randomized block design, with four replicates. Fruit and leaf samples were collected over two months (June and July 2021), in the fruit maturation phase, oven-dried and analyzed, namely, through a clustering unweighted pair group method with arithmetic mean (UPGMA). The characterization of ripe and dried coffee bean indicated differences in the performance of the cultivars. The accumulation of the macronutrients N, K, and Ca and micronutrients Fe, Mn, and B was highest in the bean, husk, fruit, and leaves of the evaluated cultivars. Nutrient concentrations and accumulation in the different evaluated organs have a direct influence on the nutritional crop management. This is crucial for a nutritional diagnosis that ensures high yields, but such mineral levels are also a result of the existing genetic diversity among cultivars, which must be taken into account for management and breeding purposes.

Potassium Phosphite Activates Components Associated with Constitutive Defense Responses in Coffea arabica Cultivars.

Phosphites have been used as inducers of resistance, activating the defense of plants and increasing its ability to respond to the invasion of the pathogen. However, the mode of action of phosphites in defense responses has not yet been fully elucidated. The objective of this study was to evaluate the effect of potassium phosphite (KPhi) in coffee cultivars with different levels of resistance to rust to clarify the mechanism by which KPhi activates the constitutive defense of plants. To this end, we studied the expression of genes and the activity of enzymes involved in the defense pathway of salicylic acid (SA) and reactive oxygen species (ROS), in addition to the levels of total soluble phenolic compounds and soluble lignin. Treatment with KPhi induced constitutive defense responses in cultivars resistant and susceptible to rust. The results suggest that KPhi acts in two parallel defense pathways, SA and ROS, which are essential for the induction of systemic acquired resistance (SAR) when activated simultaneously. The activation of the mechanisms associated with defense routes demonstrates that KPhi is a potential inducer of resistance in coffee plants.

Multiple-trait model by Bayesian inference applied to environment efficient Coffea arabica with low-nitrogen nutrient

Identifying Coffea arabica cultivars that are more efficient in the use of nitrogen is an important strategy and a necessity in the context of environmental and economic impacts attributed to excessive nitrogen fertilization. Although Coffea arabica breeding data have a multi-trait structure, they are often analyzed under a single trait structure. Thus, the objectives of this study were to use a Bayesian multitrait model, to estimate heritability in the broad sense, and to select arabica coffee cultivars with better genetic potential (desirable agronomic traits) in nitrogen-restricted cultivation. The experiment was carried out in a greenhouse with 20 arabica coffee cultivars grown in a nutrient solution with low-nitrogen content (1.5 mM). The experimental design used was in randomized blocks with three replications. Six agromorphological traits of the arabica coffee breeding program and five nutritional efficiency indices were used. The Markov Chain Monte Carlo algorithm was used to estimate genetic parameters and genetic values. The agromorphological traits were considered highly heritable, with a credibility interval (95% probability): H2 = 0.9538 – 5.89E-01. The Bayesian multitrait model presents an adequate strategy for the genetic improvement of arabica coffee grown in low-nitrogen concentrations. Coffee arabica cultivars Icatu Precoce 3282, Icatu Vermelho IAC 4045, Acaiá Cerrado MG 1474, Tupi IAC 1669-33, Catucaí 785/15, Caturra Vermelho and Obatã IAC 1669/20 demonstrated greater potential for cultivation in low-nitrogen concentration.

Transcriptomic alterations in roots of two contrasting Coffea arabica cultivars after hexanoic acid priming.

DATA REPORT article Front. Genet., 28 October 2022Sec. Plant Genomics Volume 13 - 2022 | https://doi.org/10.3389/fgene.2022.925811

Genome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica.

Bacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120C. arabica Ethiopian accessions from a historical FAO collection, 11C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history.

Shade effects on yield across different Coffea arabica cultivars — how much is too much? A meta-analysis

The coffee research community has maintained a long ongoing debate regarding the implications of shade trees in coffee production. Historically, there has been contrasting results and opinions on this matter, thus recommendations for the use of shade (namely in coffee agroforestry systems) are often deemed controversial, particularly due to potential yield declines and farmers’ income. This study is one of the first demonstrating how several Coffea arabica cultivars respond differently to shade with respect to yield. By standardising more than 200 coffee yield data from various in-field trials, we assembled the so-called “Ristretto” data pool, a one of a kind, open-source dataset, consolidating decades of coffee yield data under shaded systems. With this standardised dataset, our meta-analysis demonstrated significant genotypic heterogeneity in response to shade, showing neutral, inverted U-shaped and decreasing trends between yield and shade cover amongst 18 different cultivars. These findings encourage the examination of C. arabica at the cultivar level when assessing suitability for agroforestry systems. Comparison of productivity is also encouraged across a range of low to moderate shade levels (10–40%), in order to help elucidate potential unknown optimal shade levels for coffee production.

Potential of the coffee endophytic Bacillus cereus sensu lato strain CCBLR15 to control the plant-parasitic nematode Radopholus duriophilus

ABSTRACT Bacillus cereus sensu lato strain CCBLR15 is highly efficient in inducing in vitro the mortality of coffee-parasitic nematodes, including Pratylenchus coffeae and Radopholus duriophilus. In the present study, this strain was further characterised to investigate (1) its taxonomic position, (2) the secreted/non-secreted nature of its nematicidal compounds, and (3) its in planta biocontrol capacity towards R. duriophilus. Firstly, analysis of 16S rRNA gene sequences and motility test indicated that CCBLR15 was closely related to B. cereus sensu stricto. Secondly, nematodes separate expositions in vitro to CCBLR15 culture filtrate and cell lysate revealed that nematicidal activity was attributed to compounds released after bacterial cell lysis. Thirdly, CCBLR15 nematode biocontrol capacity was studied using three Coffea arabica cultivars, either seed- or cutting-propagated. Plants were therefore characterised by different developmental stages, referred to as ‘early' and ‘advanced', with respectively 2-3 and 6-8 leaf pairs. Additionally, plants were grown in unsterilised soil, with a one-month delay between inoculations of bacteria and nematodes to assess the persistence of the nematicidal effects. The presence of R. duriophilus in roots decreased plant growth only in one cultivar whose plants were inoculated at the ‘early' stage. Nonetheless, CCBLR15 pre-inoculation significantly reduced the number of nematodes in roots of all cultivars and inhibited the negative effects of nematodes in ‘early’-inoculated plants. These results demonstrate the capacity of CCBLR15 to control R. duriophilus and constitute an important step before studying the persistence of its biocontrol effects on a longer period or after plants establishment in the field.

Initial vegetative and reproductive development of coffee cultivars in Vale do Ribeira Paulista

This research is related to the performance evaluation of twelve Coffea arabica cultivars in Vale do Ribeira Paulista, in order to generate consistent information for the technical recommendation for cultivation in the region. The experiment was set in February 2018, at the Experimental Campus of the São Paulo State University “Júlio de Mesquita Filho” - UNESP in Registro, SP, Brazil, in a spacing of 3.00 x 0.60 m, in a randomized block design with three replications. The following parameters were evaluated: stem diameter, number of plagiotropic branches, plant height, number of internodes of plagiotropic branches, length of the first plagiotropic branch, incidence of brown spots and phoma leaf spot, infestation by leaf miner and yield. The results showed a good adaptation of all cultivars to growing conditions in Vale do Ribeira Paulista, with higher and faster vegetative development of large coffee cultivars. The productive potential of cultivars in the first harvest was similar to the performance of the same cultivars in traditional growing regions, with emphasis on ‘Arara’ and ‘Catucaí Amarelo 24/137’, with about 55 bags ha-1 of processed coffee. There was no incidence of rust disease in the experimental evaluation period, unlike other biotic agents such as leaf miner, phoma-spot and brown eye spot.

Characterization of Recently Planted Coffee Cultivars from Vegetation Indices Obtained by a Remotely Piloted Aircraft System

Brazil is the main producer and exporter and the second-largest consumer of coffee in the world, and Remotely Piloted Aircraft Systems stands out as an efficient remote detection technique applied to the study and mapping of crops. The objective of this study was to characterize three recently planted cultivars of Coffea arabica L. The study area is in Minas Gerais, Brazil, with a coffee plantation of the initial age of 5 months. The temporal behavior was determined based on monthly mean values. The spectral profile was obtained with mean values of the last month of dry and rainy periods. The statistical differences were obtained based on the non-parametric test of multiple comparisons. The estimation of the exponential equation was obtained through the Spearman correlation coefficient of determination and root mean square error. It was concluded that the seasons influence the behavior and development of cultivars, and significant statistical differences were detected for the variables, except for the chlorophyll variable. Due to the proximity and overlap of the reflectance values, spectral bands were not used to individualize cultivars. A correlation between the vegetation indices and leaf area index was observed and the exponential regression equation was estimated for each cultivar under study.

Chemical ingredients characterization basing on 1H NMR and SHS-GC/MS in twelve cultivars of Coffea arabica roasted beans

This work aimed to study the composition differences of roasted beans between 12 coffee cultivars (Catimor 7963, HIBRIDO DE TIMOR, Ruiru 11, Castillo, DTARI 296, DTARI 366, DTARI 392, DTARI 585, SL28, SL34, Catuai-Amarelo and Catuai-Vermelho) from Bourbon-Typica group and Introgressed group under subtropical humid monsoon climate. The water-soluble compounds of roasted coffee beans were characterized by proton nuclear magnetic resonance spectroscopy (1H NMR), and the aroma components were analyzed by static headspace gas chromatography mass spectrometry (SHS-GC/MS). In total, 20 water soluble compounds and 43 volatile compounds were identified. Both water-soluble and volatile compounds are rich in acidic substances, and the content varied depending on the cultivars. Furthermore, principal component analysis (PCA) clustered 12 coffee cultivars into four groups. The four different chemically defined clusters of Arabica cultivars produced by chemical differences cannot reflect the traditional grouping based on introgressed, and it is one-sided to judge coffee quality based on lineage. These results give further insight into the quality characteristics of different coffee cultivars, which is of great significance for guiding the adjustment of cultivars' structure and the breeding of new cultivars.

Effect of glyphosate and P on the growth and nutrition of Coffea arabica cultivars and on weed control

The effect of the phosphorus (P) and glyphosate interactions on the growth and nutrition of Arabica coffee cultivars (Coffea arabica), as well as on the control of Ipomoea grandifolia and Urochloa decumbens, was evaluated. Catuaí-Amarelo/IAC-62 and Catuaí-Vermelho/IAC-144 cultivars did not show glyphosate poisoning, regardless of the soil P content. However, glyphosate reduced the growth of Catuaí-Vermelho/IAC-144. In addition, the soil P content influenced the height, leaf area and dry matter of Catuaí-Amarelo/IAC-62, and the absorption of P and Ca in both cultivars. On the other hand, glyphosate efficiently controlled U. decumbens but not I. grandifolia. Glyphosate effectiveness on I. grandifolia decreased as the soil P content increased. In addition, the soil P content and the glyphosate influenced the P content in I. grandifolia and U. decumbens plants. The soil P content influenced the growth and absorption of other nutrients by coffee plants as well as glyphosate effectiveness on weed control.

Effect of physiological priming on stored coffee seeds

Abstract: The physiological priming has been used to standardize and increase the speed of development of seed lots. The use of this technique is essential in coffee cultivation, as the crop has low longevity associated with slow and uneven germination. The objective was to evaluate the effect of physiological priming on the physiological quality of coffee seeds stored with different water contents. Seeds of two cultivars of Coffea arabica were used: cv. Catuaí Vermelho IAC144 and Topázio MG1190. A portion of the seeds were dried in the shade until reaching 12% moisture, and the other did not undergo drying. The seeds were stored in a cold chamber at 10 °C for nine months. Every three months, the physiological priming technique was performed with subsequent evaluation of the physiological quality by germination tests, root protrusion, normal seedlings at fifteen days, strong normal seedlings, seedlings with expanded cotyledonary leaves and seedling dry weight. Seeds that did not undergo drying subjected to the physiological priming technique maintained physiological quality after nine months of storage. Physiological priming was detrimental to dry seeds stored for nine months.

Seedling production of Coffea arabica from different cultivars in a modified hydroponic system and nursery using different containers

ABSTRACT The development of modified hydroponic cultivation has aroused interest and its use has enabled advantages in several crops, but studies for coffee are still scarce. Thus, the objective of this research was to evaluate seedling production of three Coffea arabica cultivars (Mundo Novo IAC-376-4, Catuaí IAC-62 Amarelo and MGS Paraíso 2), in a modified hydroponic system, and to compare it with the nursery production system, using plastic polyethylene tubettes and bags. Coffee seedlings in the development phase with cotyledon leaves, were cultivated in both cultivation systems. At 90 days after the implementation of the experiment, the seedlings were analyzed for growth (height, stem diameter, total number, leaf area, root area, root and shoot dry matter weight), and physiological characteristics (chlorophyll content and stomatal conductance). For the statistical analysis, a completely randomized design (CRD) was used in a factorial scheme 3 (cultivars) x 2 (containers) x 2 (cultivation systems), with four replications of ten plants per plot. The innovative production system of coffee seedlings in modified hydroponics, in combination with the use of polyethylene bags, provided greater growth of coffee seedlings with better physiological characteristics. Among the cultivars tested, MGS Paraíso 2 stood out with higher seedling growth (number of leaves, stem diameter and root and shoot dry matter weight).

Effect of chemical treatment on the physiological and sanitary quality of stored coffee seeds

Abstract: Maintaining the health of coffee seeds is especially important during storage, as soil fungi and storage fungi can considerably reduce seed quality. Thus, chemical treatments for protection of seeds in storage becomes important in agricultural production. It is necessary to evaluate the effects of these treatments on seedling development and the protection they provide against storage fungi, aiming at seed longevity and preventing rapid deterioration. The aim of this study was to evaluate the effect of chemical treatment on the physiological and sanitary quality of stored coffee seeds. Seeds of five Coffea arabica cultivars were pre-dried, treated with Vitavax®-Thiram, and placed in cold storage at 10 °C for nine months. Seed physiological quality was evaluated every three months by the germination test and by determination of root emergence percentage, seedlings with expanded cotyledonary leaves, and seedling dry matter. Seed health quality was assessed by the health test. The chemical treatment with Vitavax-Thiram does not affect the physiological quality of stored Coffea arabica seeds. Seed treatment before storage is effective in reducing the inoculum potential of Fusarium spp. and Phoma spp. in coffee seeds.

Cold coffee seeds storage with different water content

Coffee seeds are classified as intermediate because they have low tolerance to desiccation and low longevity. Consequently, moisture control and storage conditions are important factors in maintaining the physiological quality of these seeds. Thus, the objective in this work was to evaluate the water content effect on coffee seed longevity. Seeds of five Coffea arabica cultivars from the 2016/2017 crop were used. Part of the harvested seeds was dried in the shade until reach 12% moisture and the other part did not go through drying process, remaining with 40% water content. The seeds were stored in a cold chamber at 10 oC for a period of nine months, and the physiological quality was evaluated every three months by germination, root protrusion, seedlings with expanded cotyledonary leaves, seedling dry mass and enzymatic analysis of catalase enzymes and superoxide dismutase. Regardless of the cultivar, wet seeds coffee storage provides better maintenance of physiological quality for up to nine months. Seedling vigor is reduced throughout the storageperiod, regardless of seed water content. Key words: Coffea arabica; Moisture; Seed quality; Storage.