A major paradigm shift largely because of functional genomics has been that tissues like muscle, heart, and adipose tissue are multifunctional, and can have paracrine or endocrine functions. Physical inactivity is an established risk factor for some blood clotting disorders. The effects of inactivity are most alarming when a person develops the enigmatic condition in the legs called deep venous thrombosis (DVT) or "coach syndrome," caused in part by muscular inactivity. PURPOSE: This study addressed the need to identify with microarrays, hemostasis genes expressed in leg skeletal muscle tissue, and with a translational approach, a novel candidate gene(s) that is most sensitive to physical inactivity. METHODS: Global gene expression was assessed in deep leg muscle of humans using Affymetrix microarrays after 12 hours of sitting and after normal low-intensity standing and intermittent ambulatory activity. Global gene expression of the rat soleus muscle was also assessed with microarrays after 12 hours of physical inactivity (e.g., not standing), after 12 hours of physical inactivity followed by 2 hours of walking on a treadmill, after 11 days of intermittent physical inactivity (10 hr/day) and compared to the referent control of normally caged rats with voluntary standing and intermittent cage movements. RESULTS: These studies demonstrate that human skeletal muscle tissue expresses at least 22 genes involved in hemostasis. These include the fibrinolytic factors tetranectin, annexin A2, and tPA; the anti-coagulant factors TFPI, protein C receptor, PAF acetylhydrolase; coagulation factors, and genes necessary for the posttranslational modification of these coagulation factors such as vitamin K epoxide reductase. Of special interest, lipid phosphate phosphatase-1 (LPP1/PAP2a), a key gene for degrading prothrombotic and proinflammatory lysophospholipids, was suppressed locally within muscle tissue within hours after sitting; this was also observed after acute and chronic physical inactivity conditions in rats, and exercise was relatively ineffective at counteracting this effect. CONCLUSIONS: These findings suggest that muscular inactivity contributes to hemostatic disorders not only because of the slowing of blood flow per se, but also potentially because of the contribution from genes expressed locally in muscles, such as LPP1.