CO2 Fixation In Plants Research Articles

Adopting green absorbent for CO2 capture and agricultural utilization: Biogas slurry and biomass ash case

Previously, the once-through CO2 chemical absorption process by biogas slurry was experimentally verified to offer the unique advantages like low energy consumption, cost-effectiveness, and feasibility of CO2 fixation in plants. However, this technology also faces some challenges and limitations, including a low CO2 absorption rate and performance. To improve the effectiveness and reliability of this innovative carbon capture, utilization, and storage (CCUS) technology, this study proposes a novel method to enhance the CO2 absorption performance without affecting agricultural applications of CO2 by mixing biogas slurry with biomass ash as the green CO2 absorbent. The results indicate that when the solid-liquid mass ratio of biomass ash to biogas slurry is 5:10, the CO2 loading of the biomass ash and biogas slurry mixture (BA-BS) reaches 936.7 ± 59.1 mmol/kg. Furthermore, the pH of the BA-BS remains stable at 6.9, meeting the rhizosphere pH requirements for plant cultivation. The CO2 absorption of the BA-BS liquid phase, referred to as improved biogas slurry (IBS), reaches its maximum at 230.4 ± 3.5 mmol/L, which is 126.8% higher than that of the unimproved biogas slurry. The nitrogen content in the BA-BS solid phase, calling improved biomass ash (IBA), also reaches its maximum at 4.24 ± 0.74 mg/g, thereby expanding the agricultural utilization of biomass ash. The most reasonable and effective way of utilizing CO2-rich mixed biogas slurry and biomass ash involves use IBA as the base fertilizer for tomato cultivation, supplemented later with IBS to promote growth. This optimal application allows for substantial utilization of CO2, introduced into the tomato cultivation environment by IBA and IBS. The carbon fixation of a single tomato has improved by 108.2%. This study thus provides a feasible solution for high-value negative carbonization of biogas slurry and biomass ash.

When green carbon plants meet synthetic biology

AbstractRecycling carbon dioxide (CO2) into chemicals or fuels presents a promising avenue for mitigating carbon emissions and addressing the energy crisis. Plants serve as the ideal platform for the production of materials and chemicals, thanks to their innate capacity to directly use CO2 in the synthesis of various organic compounds. While conventional methods for enhancing plant CO2 fixation may reach their limits, novel technological solutions are imperative. Synthetic biology has illuminated the potential for biosynthesising multiple carbon sources through artificial CO2 fixation pathways in vitro. Recent breakthroughs in photorespiratory bypasses and artificial carboxylation modules offer significant promise for engineering plants to improve carbon fixation, guiding the design and development of plants with more efficient CO2 utilisation. In this context, we begin by summarising recent progress in designing or engineering in vitro CO2 fixation pathways, as well as those solely established in microbes. Subsequently, we delineate strategies employed to enhance CO2 fixation in plants. Finally, we explore potential methods for introducing artificial CO2 fixation pathways into plants. These advancements are critical in advancing synthetic biology's efforts to tackle future challenges related to food and energy scarcity.

Targeted A-to-G base editing of chloroplast DNA in plants

Chloroplast DNA (cpDNA) encodes up to 315 (typically, 120–130) genes1, including those for essential components in photosystems I and II and the large subunit of RuBisCo, which catalyses CO2 fixation in plants. Targeted mutagenesis in cpDNA will be broadly useful for studying the functions of these genes in molecular detail and for developing crops and other plants with desired traits. Unfortunately, CRISPR–Cas9 and CRISPR-derived base editors, which enable targeted genetic modifications in nuclear DNA, are not suitable for organellar DNA editing2, owing to the difficulty of delivering guide RNA into organelles. CRISPR-free, protein-only base editors (including DddA-derived cytosine base editors3–8 and zinc finger deaminases9), originally developed for mitochondrial DNA editing in mammalian cells, can be used for C-to-T, rather than A-to-G, editing in cpDNA10–12. Here we show that heritable homoplasmic A-to-G edits can be induced in cpDNA, leading to phenotypic changes, using transcription activator-like effector-linked deaminases13.

Condensation of Rubisco into a proto-pyrenoid in higher plant chloroplasts

Photosynthetic CO2 fixation in plants is limited by the inefficiency of the CO2-assimilating enzyme Rubisco. In most eukaryotic algae, Rubisco aggregates within a microcompartment known as the pyrenoid, in association with a CO2-concentrating mechanism that improves photosynthetic operating efficiency under conditions of low inorganic carbon. Recent work has shown that the pyrenoid matrix is a phase-separated, liquid-like condensate. In the alga Chlamydomonas reinhardtii, condensation is mediated by two components: Rubisco and the linker protein EPYC1 (Essential Pyrenoid Component 1). Here, we show that expression of mature EPYC1 and a plant-algal hybrid Rubisco leads to spontaneous condensation of Rubisco into a single phase-separated compartment in Arabidopsis chloroplasts, with liquid-like properties similar to a pyrenoid matrix. This work represents a significant initial step towards enhancing photosynthesis in higher plants by introducing an algal CO2-concentrating mechanism, which is predicted to significantly increase the efficiency of photosynthetic CO2 uptake.

Reaction of ribulose biphosphate carboxylase/oxygenase assembled on a DNA scaffold

Ribulose-1,5-biphosphate carboxylase/oxygenase (RuBisCO), an enzyme in the Calvin-Benson-Bassham cycle of photosynthesis, catalyzes the first step of CO2 fixation in plants, algae, and photosynthetic bacteria. Despite of the important function in the global carbon cycle, RuBisCO suffers from a slow reaction rate and a competing reaction with O2 which draw attentions to improve the enzyme efficiency. In this study, a RuBisCO dimer from Rhodospirillum rubrum was assembled on a DNA scaffold using a dimeric DNA binding protein as an adaptor. The enzyme assembly was characterized by atomic force microscopy and RuBisCO assembled on the DNA scaffold showed avid enzymatic activity with retaining its parent carboxylase function. To mimic the environment of the natural microcompartment in cyanobacterial carboxysome that encapsulate the second enzyme carbonic anhydrase (CA) with RuBisCO, RuBisCO was next co-assembled with CA on the DNA scaffold. Although the natural carboxysome assembly is believed to enhance the RuBisCO activity, the co-assembly of RuBisCO and CA reduced the RuBisCO activity, suggesting that the preferential CO2 dehydration by CA reduced the RuBisCO reaction rate. In line with the recent study, our results suggest that the proximity in the interenzyme distance of RuBisCO and CA is not the crucial determinant for the enhanced RuBisCO activity in carboxysome. The assembly of RuBisCO and CA on DNA scaffold provides a platform for further study on the spatial control of RuBisCO and associating enzymes.

Pepper Rootstock and Scion Physiological Responses Under Drought Stress.

In vegetables, tolerance to drought can be improved by grafting commercial varieties onto drought tolerant rootstocks. Grafting has emerged as a tool that copes with drought stress. In previous results, the A25 pepper rootstock accession showed good tolerance to drought in fruit production terms compared with non-grafted plants and other rootstocks. The aim of this work was to study if short-term exposure to drought in grafted plants using A25 as a rootstock would show tolerance to drought now. To fulfill this objective, some physiological processes involved in roots (rootstock) and leaves (scion) of grafted pepper plants were analyzed. Pepper plants not grafted (A), self-grafted (A/A), and grafted onto a tolerant pepper rootstock A25 (A/A25) were grown under severe water stress induced by PEG addition (-0.55 MPa) or under control conditions for 7 days in hydroponic pure solution. According to our results, water stress severity was alleviated by using the A25 rootstock in grafted plants (A/A25), which indicated that mechanisms stimulated by roots are essential to withstand stress. A/A25 had a bigger root biomass compared with plants A and A/A that resulted in better water absorption, water retention capacity and a sustained CO2 assimilation rate. Consequently, plants A/A25 had a better carbon balance, supported by greater nitrate reductase activity located mainly in leaves. In the non-grafted and self-grafted plants, the photosynthesis rate lowered due to stomatal closure, which limited transpiration. Consequently, part of NO3- uptake was reduced in roots. This condition limited water uptake and CO2 fixation in plants A and A/A under drought stress, and accelerated oxidative damage by producing reactive oxygen species (ROS) and H2O2, which were highest in their leaves, indicating great sensitivity to drought stress and induced membrane lipid peroxidation. However, drought deleterious effects were slightly marked in plants A compared to A/A. To conclude, the A25 rootstock protects the scion against oxidative stress, which is provoked by drought, and shows better C and N balances that enabled the biomass to be maintained under water stress for short-term exposure, with higher yields in the field.

ECOPHYSIOLOGICAL RESPONSES OF MEDIUM MORPHOTYPE OF Paubrasilia echinata (Lam.)Gagnon,H.C.Lima and G.P.Lewis RAISED UNDER FULL SUNLIGHT AND NATURAL SHADE

ABSTRACT The existing inconsistent data on the irradiance needs of Brazilwood plants Paubrasilia echinata (Lam.) Gagnon,H.C.Lima and G.P.Lewis. can be explained by their phenotypical variations. While small-leaf morphotypes grows better in the shade, not tolerating environments with high irradiance, a recently discovered population of medium morphotype presents different behavior: better performance under direct sunlight and limited growth in the shade. In order to understand the physiological mechanisms of the medium morphotype in response to the available irradiance, this study was performed to characterize the oxidative stress metabolism, photochemical and biochemical photosynthesis efficiency, as well as anatomical adjustments of leaves of the medium morphotype of P. echinata under different intensities of irradiance. The analyses were performed at direct sunlight condition (2000 µmol m-2.s-1) and within a dense ombrophilous forest with 80% shading (192 µmol m-2.s-1). Growth, leaf anatomy, chloroplast pigments, photochemical (chlorophyll a fluorescence), and biochemical (gaseous exchanges) efficiency, soluble carbohydrates, and antioxidants were measured. The results showed that the higher efficiency in light energy uptake, paired with better photochemical performance and better CO2 fixation in plants under direct sunlight resulted in higher concentration of soluble sugars and growth. The energy that should have been used in photochemical and/or biochemical reactions of shaded plants was dissipated in the form of heat, re-emitted as fluorescence or translocated to the production of antioxidant defense compounds of the secondary metabolism. Therefore, the medium morphotype of P. echinata presents an ecological profile of sun-tolerant or pioneer species, and as such, it is recommended its planting in full sunlight. These results differ from previous studies on small morphotype of P. echinata and suggest the need for a taxonomic reconstruction of this species, which is essential to adequate management practices in Atlantic rainforest recovery programs.

Variation and inheritance of carbon isotope discrimination in wheat (Triticum aestivum)

Significant small variations exist in the proportion of the heavy isotope (13C) in organic and inorganic materials. The amounts of variations depend on the discrimination against or (in favor of) the heavy isotope through equilibrium reactions or kinetic processes particularly during CO2 fixation in plants. These variations have also paved the way to measure carbon isotope discrimination in plant materials as a surrogate for water-use efficiency. Thus looking for variation and understanding the inheritance of this character is a prerequisite for improving wheat genotypes showing high water use efficiency and tolerance to drought. The main objectives of this review is to provide an overview of various aspects in which inheritance of ∆ is documented and of variation for carbon isotope discrimination reported in wheat under different circumstances. The relationship between carbon isotope discrimination and drought tolerance is also discussed exclusively in wheat.

Insights towards sulfonamide drug specificity in α-carbonic anhydrases

Carbonic anhydrases (CAs, EC 4.2.1.1) are a group of metalloenzymes that play important roles in carbon metabolism, pH regulation, CO2 fixation in plants, ion transport etc., and are found in all eukaryotic and many microbial organisms. This family of enzymes catalyzes the interconversion of CO2 and HCO3−. There are at least 16 different CA isoforms in the alpha structural class (α-CAs) that have been isolated in higher vertebrates, with CA isoform II (CA II) being ubiquitously abundant in all human cell types. CA inhibition has been exploited clinically for decades for various classes of diuretics and anti-glaucoma treatment. The characterization of the overexpression of CA isoform IX (CA IX) in certain tumors has raised interest in CA IX as a diagnostic marker and drug target for aggressive cancers and therefore the development of CA IX specific inhibitors. An important goal in the field of CA is to identify, rationalize, and design potential compounds that will preferentially inhibit CA IX over all other isoforms of CA. The variations in the active sites between isoforms of CA are subtle and this causes non-specific CA inhibition which leads to various side effects. In the case of CA IX inhibition, CA II along with other isoforms of CA provide off-target binding sites which is undesirable for cancer treatment. The focus of this article is on CA IX inhibition and two different structural approaches to CA isoform specific drug designing: tail approach and fragment addition approach.

The co-ordination of central plant metabolism by the circadian clock

A circadian clock optimizes many aspects of plant biology relative to the light/dark cycle. One example is the circadian control of primary metabolism and CO2 fixation in plants that carry out a metabolic adaptation of photosynthesis called CAM (crassulacean acid metabolism). These plants perform primary CO2 fixation at night using the enzyme phosphoenolpyruvate carboxylase and exhibit a robust rhythm of CO2 fixation under constant conditions. Transcriptomic analysis has revealed that many genes encoding enzymes in primary metabolic pathways such as glycolysis and starch metabolism are under the control of the circadian clock in CAM plants. These transcript changes are accompanied by changes in metabolite levels associated with flux through these pathways. The molecular basis for the circadian control of CAM remains to be elucidated. Current research is focusing on the identity of the CAM central oscillator and the output pathway that links the central oscillator to the control of plant metabolism.

The co-ordination of central plant metabolism by the circadian clock

A circadian clock optimizes many aspects of plant biology relative to the light/dark cycle. One example is the circadian control of primary metabolism and CO2 fixation in plants that carry out a metabolic adaptation of photosynthesis called CAM (crassulacean acid metabolism). These plants perform primary CO2 fixation at night using the enzyme phosphoenolpyruvate carboxylase and exhibit a robust rhythm of CO2 fixation under constant conditions. Transcriptomic analysis has revealed that many genes encoding enzymes in primary metabolic pathways such as glycolysis and starch metabolism are under the control of the circadian clock in CAM plants. These transcript changes are accompanied by changes in metabolite levels associated with flux through these pathways. The molecular basis for the circadian control of CAM remains to be elucidated. Current research is focusing on the identity of the CAM central oscillator and the output pathway that links the central oscillator to the control of plant metabolism.

How can increased use of biological N2fixation in agriculture benefit the environment?

Asymbiotic, associative or symbiotic biological N2 fixation (BNF), is a free and renewable resource, which should constitute an integral part of sustainable agro-ecosystems. Yet there has been a rapid increase in use of fertiliser N and a parallel decline in the cultivation of leguminous plants and BNF, especially in the developed world. Fertilisers have boosted crop yields, but intensive agricultural systems have increasingly negative effects on the atmospheric and aquatic environments. BNF, either alone or in combination with fertilisers and animal manures, may prove to be a better solution to supply nitrogen to the cropping systems of the future. This review focuses on the potential benefit of BNF on the environment especially on soil acidification, rhizosphere processes and plant CO2 fixation. As fertiliser N has supplanted BNF in agriculture the re-substitution of BNF is considered. What is the consequence of fertiliser N production on energy use? The effect of fertiliser use on the release of the greenhouse gas CO2 is estimated at approximately 1% of the global anthropogenic emission of CO2. The role of BNF on nitrogen cycling, ammonia volatilisation, N2O emission and NO3 leaching suggests that BNF is less likely than fertilisers to cause losses during pre-cropping and cropping. Sometimes however the post-harvest losses may be greater, due to the special qualities of legume residues. Nevertheless, legumes provide other `ecological services' including improved soil structure, erosion protection and greater biological diversity.