Coastal wetland ecosystems are critical sinks for atmospheric carbon dioxide, playing a vital role in global carbon cycling and climate regulation. The decomposition of leaf litter plays a crucial role in the formation and stability of soil organic carbon (SOC) in these environments. This study investigated the impact of leaf litter decomposition from five tree species (Populus deltoids, Ligustrum lucidum, Taxodium 'Zhongshanshan', Hibiscus hamabo, and Nerium oleander) on SOC dynamics, humus composition, and soil bacterial community structure in a tidal flat. Litterbags were used to monitor the mass loss and changes in litter chemical composition over 270 days. The results revealed significant differences in decomposition rates among the tree species, with Nerium oleander exhibiting the fastest decomposition and Populus deltoids the slowest. Surprisingly, initial litter chemistry did not correlate with decomposition rates; however, changes in lignin and hemicellulose content during decomposition were significantly related to mass loss. Despite its rapid decomposition, Nerium oleander litter resulted in the highest accumulation of SOC, total humus, and humin compared to the other species, challenging the conventional view that slower decomposition leads to greater SOC storage. The soil microbial community structure was significantly influenced by SOC, humus, and litter components, with distinct microbial assemblages associated with each tree species. A random forest model identified key bacterial taxa, predominantly Proteobacteria, as important predictors of SOC content, highlighting the role of bacterial diversity in regulating SOC dynamics. These findings underscore the importance of considering litter quality, decomposition dynamics, and bacterial community composition in strategies aimed at enhancing soil carbon sequestration. This study suggests that selecting tree species with rapidly decomposing litter, such as Nerium oleander, in coastal plantations can be an effective management tool for optimizing soil carbon storage, offering valuable insights for mitigating climate change impacts.