Chilean Upwelling Research Articles

Contributions of Internal Variability and External Forcing to the Recent Trends in the Southeastern Pacific and Peru–Chile Upwelling System

AbstractIn a warming world context, sea surface temperature (SST) off central-south Peru, northern Chile, and farther offshore increases at a slower rate than the global average since several decades (i.e., cools, relative to the global average). This tendency is synchronous with an interdecadal Pacific oscillation (IPO) negative trend since ~1980, which has a cooling signature in the southeastern Pacific. Here, we use a large ensemble of historical coupled model simulations to investigate the relative roles of internal variability (and in particular the IPO) and external forcing in driving this relative regional cooling, and the associated mechanisms. The ensemble mean reproduces the relative cooling, in response to an externally forced southerly wind anomaly, which strengthens the upwelling off Chile in recent decades. This southerly wind anomaly results from the poleward expansion of the Southern Hemisphere Hadley cell. Attribution experiments reveal that this poleward expansion and the resulting enhanced upwelling mostly occur in response to increasing greenhouse gases and stratospheric ozone depletion since ~1980. An oceanic heat budget confirms that the wind-forced upwelling enhancement dominates the relative cooling near the coast. In contrast, a wind-forced deepening of the mixed layer drives the offshore cooling. While internal variability contributes to the spread of tendencies, the ensemble-mean relative cooling in the southeastern Pacific is consistent with observations and occurs irrespectively of the IPO phase, hence, indicating the preeminent role of external forcing.

A Late Quaternary climate record based on long-chain diol proxies from the Chilean margin

Abstract. In this study we have applied different indices based on long-chain diols, i.e., the long-chain diol index (LDI) as a proxy for past SST, the diol index as an indicator of past upwelling conditions, and the nutrient diol index (NDI) as a proxy for nitrate and phosphate concentrations in seawater. The proxies were analyzed in marine sediments recovered at ODP Site 1234, located within the Peru–Chile upwelling system, with a ∼2 kyr resolution covering the last 150 kyr. We also generated TEX86H and U37K′ temperature and planktonic δ18O records, as well as total organic carbon (TOC) and accumulation rates (ARs) of TOC and lipid biomarkers (i.e., C37 alkenones, GDGTs, dinosterol, and loliolide) to reconstruct past phytoplankton production. The LDI-derived SST record covaries with TEX86H- and U37K′-derived SST records as well as with the planktonic δ18O record, implying that the LDI reflects past SST variations at this site. TOC and phytoplankton AR records indicate increased export production during the last interglacial (MIS 5), simultaneous with a peak in the abundance of preserved Chaetoceros diatoms, suggesting intensified upwelling during this period. The diol index is relatively low during the upwelling period, but peaks before and after this period, suggesting that Proboscia diatoms were more abundant before and after the period of upwelling. The NDI reveals the same trends as the diol index, suggesting that the input of nitrate and phosphate was minimal during upwelling, which is unrealistic. We suggest that the diol index and NDI should perhaps be considered as indicators for Proboscia productivity instead of upwelling conditions or nutrient concentrations.

Diversity and activity of nitrogen‐fixing communities across ocean basins

AbstractRecent observations of N2 fixation rates (NFR) and the presence of nitrogenase (nifH) genes from heterotrophic N2‐fixing (diazotrophic) prokaryotes in unusual habitats challenge the paradigm that pelagic marine N2 fixation is constrained to cyanobacteria in warm, oligotrophic, surface waters. Here, we compare NFR and diazotrophic diversity (assessed via high‐throughput nifH sequencing) from a region known to be dominated by cyanobacterial diazotrophs (the North Pacific Subtropical Gyre, NPSG) to two regions dominated by heterotrophic diazotrophs: the Eastern South Pacific (ESP, from the Chilean upwelling system to the subtropical gyre) and the Pacific Northwest coastal upwelling system (PNW). We observed distinct biogeographical patterns among the three regions. Diazotrophic community structure differed strongly between the NPSG, dominated by cyanobacterium UCYN‐A, and the ESP, dominated by heterotrophic nifH group 1J/1K, yet surface NFR were similar in magnitude (up to 5.1 nmol N L−1 d−1). However, while diverse, predominantly heterotrophic nifH genes were recovered from the PNW and the mesopelagic of the NPSG, NFR were undetectable in both of these environments (although glucose amendments stimulated low rates in the deep NPSG). Our work suggests that while diazotrophs may be nearly omnipresent in marine waters, the activity of this functional group is regionally restricted. Further, we show that the detection limits of the 15N2 fixation assay suggest that many of the low NFR reported for the mesopelagic (often < 0.1 nmol N L−1 d−1 in the literature) are not indicative of active diazotrophy, highlighting the challenges of assessing the ecosystem significance of heterotrophic diazotrophs.

An Index to Distinguish Surface- and Subsurface-Intensified Vortices from Surface Observations

AbstractIn this study, the authors first show that it is difficult to reconstruct the vertical structure of vortices using only surface observations. In particular, they show that the recent surface quasigeostrophy (SQG) and interior and surface quasigeostrophy (ISQG) methods systematically lead to surface-intensified vortices, and those subsurface-intensified vortices are thus not correctly modeled. The authors then investigate the possibility of distinguishing between surface- and subsurface-intensified eddies from surface data only, using the sea surface height and the sea surface temperature available from satellite observations. A simple index, based on the ratio of the sea surface temperature anomaly and the sea level anomaly, is proposed. While the index is expected to give perfect results for isolated vortices, the authors show that in a complex environment, errors can be expected, in particular when strong currents exist in the vicinity of the vortex. The validity of the index is then analyzed using results from a realistic regional circulation model of the Peru–Chile upwelling system, where both surface and subsurface eddies coexist. The authors find that errors are mostly associated with double-core eddies (aligned surface and subsurface cores) and that the index can be useful to determine the nature of mesoscale eddies (surface or subsurface intensified) from surface (satellite) observations. However, the errors reach 24%, and some possible improvements of the index calculations are discussed.

Southern-ocean and glaciogenic nutrients control diatom export production on the Chile margin

Biogenic particle flux was reconstructed using 230-Thorium normalization at two sites on the southern Chile margin. ODP Site 1233 at 41°S, 838 m depth, is at the southern limit of the Peru–Chile upwelling system, where the northern extent of the Antarctic Circumpolar Current impinges on the South American continental margin. ODP Site 1234, at 36°S, 1014 m depth, is located within the core of the coastal upwelling system near the mouths of the Bio Bio and Itata Rivers. At 41°S, opal, lithogenic and carbonate fluxes are greatest during the Last Glacial interval (26–20 ka), carbonate has a secondary peak during the mid Holocene (∼8 ka) and organic carbon fluxes increase slightly from 17 ka to the present. At 36°S, large lithogenic fluxes are observed both during the Last Glacial interval and the Holocene, and a maximum in organic carbon flux is observed during the late Holocene (∼5 ka) without an accompanying peak in opal flux. These reconstructed fluxes at 36°S and 41°S fit within a larger latitudinal pattern of a poleward increase in the magnitude of opal flux during the glacial period. The pattern of normalized opal flux, opal mass accumulation rate and opal:carbonate ratios is consistent with either i) enhanced supply of Si from the Southern Ocean, as proposed by the Silicic Acid Leakage Hypothesis or ii) enhanced Si and Fe delivery from land, driven by glacial erosion. The pattern of reconstructed export production supports our view that the appearance of more reducing conditions in the sediments upon deglaciation was most likely driven by decreased ventilation, rather than increased local productivity.

A model-based insight into the coupling of nitrogen and sulfur cycles in a coastal upwelling system.

The biogeochemical cycling in oxygen-minimum zones (OMZs) is dominated by the interactions of microbial nitrogen transformations and, as recently observed in the Chilean upwelling system, also through the energetically less favorable remineralization of sulfate reduction. The latter process is masked, however, by rapid sulfide oxidation, most likely through nitrate reduction. Thus, the cryptic sulfur cycle links with the nitrogen cycle in OMZ settings. Here, we model the physical-chemical water column structure and the observed process rates as driven by formation and sinking of organic detritus, to quantify the nitrogen and sulfur cycles in the Chilean OMZ. A new biogeochemical submodule was developed and coupled to the Regional Ocean Model System (ROMS). The model results generally agree with the observed distribution of reactive species and the measured process rates. Modeled heterotrophic nitrate reduction and sulfate reduction are responsible for 47% and 36%, respectively, of organic remineralization in a 150 m deep zone below mixed layer. Anammox contributes to 61% of the fixed nitrogen lost to N2 gas, while the rest of the loss is through canonical denitrification as a combination of organic matter oxidation by nitrite reduction and sulfide-driven denitrification. Mineralization coupled to heterotrophic nitrate reduction supplies ∼48% of the ammonium required by anammox. Due to active sulfate reduction, model results suggest that sulfide-driven denitrification contributes to 36% of the nitrogen loss as N2 gas. Our model results highlight the importance of considering the coupled nitrogen and sulfur cycle in examining open-ocean anoxic processes under present, past, and future conditions.

What dynamics drive future wind scenarios for coastal upwelling off Peru and Chile?

The dynamics of the Peru–Chile upwelling system (PCUS) are primarily driven by alongshore wind stress and curl, like in other eastern boundary upwelling systems. Previous studies have suggested that upwelling-favorable winds would increase under climate change, due to an enhancement of the thermally-driven cross-shore pressure gradient. Using an atmospheric model on a stretched grid with increased horizontal resolution in the PCUS, a dynamical downscaling of climate scenarios from a global coupled general circulation model (CGCM) is performed to investigate the processes leading to sea-surface wind changes. Downscaled winds associated with present climate show reasonably good agreement with climatological observations. Downscaled winds under climate change show a strengthening off central Chile south of 35°S (at 30°S–35°S) in austral summer (winter) and a weakening elsewhere. An alongshore momentum balance shows that the wind slowdown (strengthening) off Peru and northern Chile (off central Chile) is associated with a decrease (an increase) in the alongshore pressure gradient. Whereas the strengthening off Chile is likely due to the poleward displacement and intensification of the South Pacific Anticyclone, the slowdown off Peru may be associated with increased precipitation over the tropics and associated convective anomalies, as suggested by a vorticity budget analysis. On the other hand, an increase in the land–sea temperature difference is not found to drive similar changes in the cross-shore pressure gradient. Results from another atmospheric model with distinct CGCM forcing and climate scenarios suggest that projected wind changes off Peru are sensitive to concurrent changes in sea surface temperature and rainfall.

Sensitivity of recruitment rates anchovy (Engraulis ringens) to environmental changes in Southern Peru—Northern Chile

The recruitment rate of anchovy in the Peru–Chile upwelling system was studied by testing sensitive to environmental variability when the spawning stock is low in abundance. Times series of sea surface temperature, salinity, depth of the 15°C isotherm, the upper limit of the oxygen minimum zone, upwelling indices, the Southern Oscillation Index, and indices El Niño 1+2 and El Niño 3.4 were summarized trough Principal Component Analysis (PCA). The first PCA (PC-I) explained 57% of variance and was related to interannual variability driven by the El Niño-Southern Oscillation. The second Principal Component explained 15% of variance and was linked to upwelling indices. Anchovy recruitment rate anomalies were correlated with PC-I scores on the basis of a 6-year-moving-window and accumulated correlation as time progressed. Significant correlation coefficients were found when the spawning stock biomass was low in abundance before 1990. Once sufficient spawning biomass was accumulated (after 1990), the stock was less sensitive to environmental variability. Thus, sensitivity to environmental changes in anchovy, and probably in other small pelagic fishes, is stock-size dependent. This is a key aspect to be considered in the management of transboundary fish stock shared between Chile and Peru, upon current efforts to develop an ecosystem approach to fisheries management.

The Low-Level Atmospheric Circulation near Tongoy Bay–Point Lengua de Vaca (Chilean Coast, 30°S)

Abstract Strong southerly, terrain parallel winds often occur along the coast of north-central Chile (25°–35°S) embedded in the marine atmospheric boundary layer and the lower part of the capping temperature inversion. Their offshore structure and variability have received considerable attention because of the effect on open-ocean processes and connection with the southeast Pacific cloud layer. Mesoscale low-level circulations linked to the coastal topography (e.g., coastal jets and sea breeze) are less studied in Chile, but are particularly relevant as they alter the upper-ocean circulation and the cloud pattern in the nearshore strip. Surface, radiosonde, and airborne meteorological observations near point Lengua de Vaca (LdV)–Tongoy Bay (TB) at 30°S are used alongside numerical modeling to understand the local circulation near a prominent upwelling center. Most observations were gathered during the Variability of the American Monsoon Systems (VAMOS) Ocean–Cloud–Atmosphere–Land Study Chilean Upwelling Experiment (VOCALS-CUpEx) during two weeks in late spring 2009. The regional topography resembles other major capes, but south of TB and east of LdV there is a low (100–300 m), dry marine terrace bounded by high elevation at the coast (~600 m) and farther inland. Coastal soundings 25 km upstream of LdV revealed a southerly wind maximum near the surface and another at 900 m separated by a destabilized layer, deviating from the two-layer model often applied to coastal flow. In the morning a shallow sea breeze penetrates from TB to the marine terrace, but is overridden by southerly flow in the afternoon. Furthermore, between 400 and 900 m, warm continental air is advected from over the marine terrace creating a residual boundary layer over TB. Concurrent with slower changes offshore, the low-level warming over TB leads to a marked cross-shore pressure gradient enhancing the coastal jet just north of LdV.

VOCALS-CUpEx: the Chilean Upwelling Experiment

Abstract. The VAMOS Ocean-Cloud-Atmosphere-Land Study Regional Experiment (VOCALS-REx) was a major field experiment conducted in spring of 2008 off southern Peru and northern Chile, aimed at better understanding the coupled climate systems of the southeast Pacific. Because of logistical constrains, the coastal area around 30° S was not sampled during VOCALS-REx. This area not only marks the poleward edge of the subtropical stratocumulus cloud regime (thus acting as a source of transient disturbances) but is also one of the most active upwelling centers and source of surface ocean kinetic energy along the Chilean coast. To fill such an observational gap, a small, brief, but highly focused field experiment was conducted in late spring 2009 in the near-shore region around 30° S. The Chilean Upwelling Experiment (CUpEx) was endorsed by VOCALS as a regional component. CUpEx included long-term monitoring, an intensive two-week field campaign and off-shore research flights. Our goal was to obtain an atmospheric/oceanic dataset with enough temporal and spatial coverage to be able to document (a) the mean diurnal cycles of the lower-troposphere and upper-ocean in a region of complex topography and coastline geometry, and (b) the ocean-atmosphere response to the rapid changes in coastal winds from strong, upwelling-favorable equatorward flow (southerly winds) to downwelling-favorable poleward flow (northerly winds). In this paper we describe the measurement platforms and sampling strategy, and provide an observational overview, highlighting some key mean-state and transient features.

Groups without Cultured Representatives Dominate Eukaryotic Picophytoplankton in the Oligotrophic South East Pacific Ocean

BackgroundPhotosynthetic picoeukaryotes (PPE) with a cell size less than 3 µm play a critical role in oceanic primary production. In recent years, the composition of marine picoeukaryote communities has been intensively investigated by molecular approaches, but their photosynthetic fraction remains poorly characterized. This is largely because the classical approach that relies on constructing 18S rRNA gene clone libraries from filtered seawater samples using universal eukaryotic primers is heavily biased toward heterotrophs, especially alveolates and stramenopiles, despite the fact that autotrophic cells in general outnumber heterotrophic ones in the euphotic zone.Methodology/Principal FindingsIn order to better assess the composition of the eukaryotic picophytoplankton in the South East Pacific Ocean, encompassing the most oligotrophic oceanic regions on earth, we used a novel approach based on flow cytometry sorting followed by construction of 18S rRNA gene clone libraries. This strategy dramatically increased the recovery of sequences from putative autotrophic groups. The composition of the PPE community appeared highly variable both vertically down the water column and horizontally across the South East Pacific Ocean. In the central gyre, uncultivated lineages dominated: a recently discovered clade of Prasinophyceae (IX), clades of marine Chrysophyceae and Haptophyta, the latter division containing a potentially new class besides Prymnesiophyceae and Pavlophyceae. In contrast, on the edge of the gyre and in the coastal Chilean upwelling, groups with cultivated representatives (Prasinophyceae clade VII and Mamiellales) dominated.Conclusions/SignificanceOur data demonstrate that a very large fraction of the eukaryotic picophytoplankton still escapes cultivation. The use of flow cytometry sorting should prove very useful to better characterize specific plankton populations by molecular approaches such as gene cloning or metagenomics, and also to obtain into culture strains representative of these novel groups.

Coccolith distribution patterns in surface sediments of Equatorial and Southeastern Pacific Ocean

This study aims to contribute to a more detailed knowledge of the biogeography of coccolithophores in the Equatorial and Southeastern Pacific Ocean. Census data of fossil coccoliths are presented in a suite of core-top sediment samples from 15°N to 50.6°S and from 71°W to 93°W. Following standard preparation of smear slides, a total of 19 taxa are recognized in light microscopy and their relative abundances are determined for 134 surface sediment samples. Considering the multivariate character of oceanic conditions and their effects on phytoplankton, a Factor Analysis was performed and three factors were retained. Factor 1, dominated by Florisphaera profunda and Gephyrocapsa oceanica, includes samples located under warm water masses and indicates the occurrence of calcite dissolution in the water column in the area offshore Chile. Factor 2 is related to cold, low-salinity surface-water masses from the Chilean upwelling, and is dominated by Emiliania huxleyi, Gephyrocapsa sp. < 3 μm, Coccolithus pelagicus and Gephyrocapsa muellerae. Factor 3 is linked to more saline, coastal upwelling areas where Calcidiscus leptoporus and Helicosphaera carteri are the dominant species.

Carbon and phosphate incorporation rates of microbial assemblages in contrasting environments in the Southeast Pacific

Size-fractionated chlorophyll a (chl a) was determined along with carbon (C) and phos- phate (P) incorporation rates over a west-east transect in the Southeast Pacific (between 146.36° W and 72.49° W). A clear longitudinal gradient was observed for both chl a and C and P incorporation rates from the productive areas, near the Marquesas Islands and the Chilean upwelling, to the hyperoligo- trophic area associated with the central part of the Southeast Pacific Gyre (SPG). The 0.2-0.6 µm frac- tion represented 15 to 43% (29 ± 7% mean ± SD, n = 24) of the P incorporation rate along the transect, suggesting that heterotrophic bacteria were important factors in the P cycle as dissolved inorganic P consumers. Small-sized cells ( 2 µm) accounted for a significantly larger fraction of the total primary production, despite having lower chl a biomass and P incorporation rates. Consequently, larger cells presented higher photosynthetic efficiency values than the smaller phytoplankton. The C:P incorporation rate ratios exhibited increasing deviation from the canonical stoichiometric ratios of 106 and 50 (for phytoplankton and heterotrophic bacteria, respec- tively) towards the centre of the SPG. We propose hypotheses to explain these deviations.

Factors limiting heterotrophic bacterial production in the southern Pacific Ocean

Abstract. The role of potential factors limiting bacterial growth was investigated along vertical and longitudinal gradients across the South Eastern Pacific Gyre. The effects of glucose, nitrate, ammonium and phosphate additions on heterotrophic bacterial production (using leucine technique) were studied in parallel in unfiltered seawater samples incubated under natural daily irradiance. The enrichments realized on the subsurface showed three types of responses. From 141° W (Marquesas plateau) to approx 125° W, bacteria were not bottom-up controlled, as confirmed by the huge potential of growth in non-enriched seawater (median of enhancement factor×39 in 24 h). Within the Gyre (125° W–95° W), nitrogen alone stimulated leucine incorporation rates (median×4.2), but rapidly labile carbon (glucose) became a second limiting factor (median×37) when the two elements were added. Finally from the border of the gyre to the Chilean upwelling (95° W–73° W), labile carbon was the only factor stimulating heterotrophic bacterial production. Interaction between phytoplankton and heterotrophic bacterial communities and the direct versus indirect effect of iron and macronutrients on bacterial production were also investigated in four selected sites: two sites on the vicinity of the Marquesas plateau, the centre of the gyre and the Eastern border of the gyre. Both phytoplankton and heterotrophic bacteria were limited by availability of nitrogen within the gyre, but not by iron. Iron limited phytoplankton at Marquesas plateau and at the eastern border of the gyre. However 48 h enrichment experiments were not sufficient to show any clear limitation of heterotrophic bacteria within Marquesas plateau and showed a limitation of these organisms by labile carbon in the eastern border of the Gyre.

Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data

Abstract. In the frame of the BIOSOPE cruise in 2004, the spatial distribution and structure of phytoplankton pigments was investigated along a transect crossing the ultra-oligotrophic South Pacific Subtropical Gyre (SPSG) between the Marquesas Archipelago (141° W–8° S) and the Chilean upwelling (73° W–34° S). A High Performance Liquid Chromatography (HPLC) method was improved in order to be able to accurately quantify pigments over such a large range of trophic levels, and especially from strongly oligotrophic conditions. Seven diagnostic pigments were associated to three phytoplankton size classes (pico-, nano and microphytoplankton). The total chlorophyll-α concentrations [TChlα] in surface waters were the lowest measured in the centre of the gyre, reaching 0.017 mg m−3. Pigment concentrations at the Deep Chlorophyll Maximum (DCM) were generally 10 fold the surface values. Results were compared to predictions from a global parameterisation based on remotely sensed surface [TChlα]. The agreement between the in situ and predicted data for such contrasting phytoplankton assemblages was generally good: throughout the oligotrophic gyre system, picophytoplankton (prochlorophytes and cyanophytes) and nanophytoplankton were the dominant classes. Relative bacteriochlorophyll-α concentrations varied around 2%. The transition zone between the Marquesas and the SPSG was also well predicted by the model. However, some regional characteristics have been observed where measured and modelled data differ. Amongst these features is the extreme depth of the DCM (180 m) towards the centre of the gyre, the presence of a deep nanoflagellate population beneath the DCM or the presence of a prochlorophyte-enriched population in the formation area of the high salinity South Pacific Tropical Water. A coastal site sampled in the eutrophic upwelling zone, characterised by recently upwelled water, was significantly and unusually enriched in picoeucaryotes, in contrast with an offshore upwelling site where a more typical senescent diatom population prevailed.

Evidence for efficient regenerated production and dinitrogen fixation in nitrogen-deficient waters of the South Pacific Ocean: impact on new and export production estimates

Abstract. One of the major objectives of the BIOSOPE cruise, carried out on the R/V Atalante from October-November 2004 in the South Pacific Ocean, was to establish productivity rates along a zonal section traversing the oligotrophic South Pacific Gyre (SPG). These results were then compared to measurements obtained from the nutrient – replete waters in the Chilean upwelling and around the Marquesas Islands. A dual 13C/15N isotope technique was used to estimate the carbon fixation rates, inorganic nitrogen uptake (including dinitrogen fixation), ammonium (NH4) and nitrate (NO3) regeneration and release of dissolved organic nitrogen (DON). The SPG exhibited the lowest primary production rates (0.15 g C m−2 d−1), while rates were 7 to 20 times higher around the Marquesas Islands and in the Chilean upwelling, respectively. In the very low productive area of the SPG, most of the primary production was sustained by active regeneration processes that fuelled up to 95% of the biological nitrogen demand. Nitrification was active in the surface layer and often balanced the biological demand for nitrate, especially in the SPG. The percentage of nitrogen released as DON represented a large proportion of the inorganic nitrogen uptake (13–15% in average), reaching 26–41% in the SPG, where DON production played a major role in nitrogen cycling. Dinitrogen fixation was detectable over the whole study area; even in the Chilean upwelling, where rates as high as 3 nmoles l−1 d−1 were measured. In these nutrient-replete waters new production was very high (0.69±0.49 g C m−2 d−1) and essentially sustained by nitrate levels. In the SPG, dinitrogen fixation, although occurring at much lower daily rates (≈1–2 nmoles l−1 d−1), sustained up to 100% of the new production (0.008±0.007 g C m−2 d−1) which was two orders of magnitude lower than that measured in the upwelling. The annual N2-fixation of the South Pacific is estimated to 21×1012g, of which 1.34×1012g is for the SPG only. Even if our "snapshot" estimates of N2-fixation rates were lower than that expected from a recent ocean circulation model, these data confirm that the N-deficiency South Pacific Ocean would provide an ideal ecological niche for the proliferation of N2-fixers which are not yet identified.

Distribution of micro-organisms along a transect in the South-East Pacific Ocean (BIOSOPE cruise) using epifluorescence microscopy

Abstract. The distribution of selected groups of micro-organisms was analyzed along a South-East Pacific Ocean transect sampled during the BIOSOPE cruise in 2004. The transect could be divided into four regions of contrasted trophic status: a High Nutrient Low Chlorophyll (HNLC) region (mesotrophic) near the equator, the South-East Pacific Ocean gyre (hyper-oligotrophic), a transition region between the gyre and the coast of South America (moderately oligotrophic), and the Chile upwelling (eutrophic). The abundance of phycoerythrin containing picocyanobacteria (PE picocyanobacteria), autotrophic and heterotrophic eukaryotes (classified into different size ranges), dinoflagellates, and ciliates was determined by epifluorescence microscopy after DAPI staining. Despite some apparent loss of cells due to sample storage, distribution patterns were broadly similar to those obtained by flow cytometry for PE picocyanobacteria and picoeukaryotes. All populations reached a maximum in the Chile upwelling and a minimum near the centre of the gyre. The maximum abundance of PE picocyanobacteria was 70 103 cell mL−1. Abundance of autotrophic eukaryotes and dinoflagellates reached 24.5 103 and 20 cell mL−1, respectively. We observed a shift in the size distribution of autotrophic eukaryotes from 2–5 μm in eutrophic and mesotrophic regions to less than 2 μm in the central region. The contribution of autotrophic eukaryotes to total eukaryotes was the lowest in the central gyre. Maximum concentration of ciliates (18 cell mL−1) also occurred in the Chile upwelling, but, in contrast to the other groups, their abundance was very low in the HNLC zone and near the Marquesas Islands. Two key findings of this work that could not have been observed with other techniques are the high percentage of PE picocyanobacteria forming colonies in the HLNC region and the observation of numerous dinoflagellates with bright green autofluorescence.

Distribution of inorganic and organic nutrients in the South Pacific Ocean − evidence for long-term accumulation of organic matter in nitrogen-depleted waters

Abstract. During the BIOSOPE cruise the RV Atalante was dedicated to study the biogeochemical properties in the South Pacific between the Marquesas Islands (141° W–8° S) and the Chilean upwelling (73° W–34° S). Over the 8000 km covered by the cruise, several different trophic situations were encountered, in particular strong oligotrophic conditions in the South Pacific Gyre (SPG, between 123° W and 101° W). In this isolated region, nitrate was undetectable between the surface and 160–180 m and only trace quantities (&lt;20 nmoles l−1) of regenerated nitrogen (nitrite and ammonium) were detected, even in the subsurface maximum. Integrated nitrate over the photic layer, which reached 165 m, was close to zero. Despite this severe nitrogen-depletion, phosphate was always present in significant concentrations (≈0.1 μmoles l−1), while silicic acid was maintained at low but classical oceanic levels (≈1 μmoles l−1). In contrast, the Marquesas region (MAR) to the west and Chilean upwelling (UPW) to the east were characterized by high nutrient concentrations, one hundred to one thousand fold higher than in the SPG. The distribution of surface chlorophyll reflected the nitrate gradient, the lowest concentrations (0.023 nmoles l−1) being measured at the centre of the SPG, where integrated value throughout the photic layer was very low (≈ 10 mg m−2). However, due to the relatively high concentrations of chlorophyll-a encountered in the DCM (0.2 μg l−1), chlorophyll-a concentrations throughout the photic layer were less variable than nitrate concentrations (by a factor 2 to 5). In contrast to chlorophyll-a, integrated particulate organic matter (POM) remained more or less constant along the study area (500 mmoles m−2, 60 mmoles m−2 and 3.5 mmoles m−2 for particulate organic carbon, particulate organic nitrogen and particulate organic phosphorus, respectively), with the exception of the upwelling, where values were two fold higher. The residence time of particulate carbon in the surface water was only 4–5 days in the upwelling, but up to 30 days in the SPG, where light isotopic δ15N signal noted in the suspended POM suggests that N2-fixation provides a dominant supply of nitrogen to phytoplankton. The most striking feature was the large accumulation of dissolved organic matter (DOM) in the SPG compared to the surrounding waters, in particular dissolved organic carbon (DOC) where concentrations were at levels rarely measured in oceanic waters (&gt;100 μmoles l−1). Due to this large pool of DOM in the SPG photic layer, integrated values followed a converse geographical pattern to that of inorganic nutrients with a large accumulation in the centre of the SPG. Whereas suspended particulate matter in the mixed layer had a C/N ratio largely conforming to the Redfield stochiometry (C/N≈6.6), marked deviations were observed in this excess DOM (C/N≈16 to 23). The marked geographical trend suggests that a net in situ source exists, mainly due to biological processes. Thus, in spite of strong nitrate-depletion leading to low chlorophyll biomass, the closed ecosystem of the SPG can accumulate large amounts of C-rich dissolved organic matter. The implications of this finding are examined, the conclusion being that, due to weak lateral advection, the biologically produced dissolved organic carbon can be accumulated and stored in the photic layer for very long periods. In spite of the lack of seasonal vertical mixing, a significant part of new production (up to 34%), which was mainly supported by dinitrogen fixation, can be exported to deep waters by turbulent diffusion in terms of DOC. The diffusive rate estimated in the SPG (134 μmolesC m−2 d−1), was quite equivalent to the particles flux measured by sediments traps.

Dissolved iron distribution in the tropical and sub tropical South Eastern Pacific

Abstract. Dissolved iron (DFe) distributions (&lt;0.2 μm) were determined in the upper water column (0–400 m) of the south eastern tropical and subtropical Pacific, in October–November 2004. Data were collected along a transect extending from the Marquesas Islands to the Chilean coast with most of the stations located in the south Pacific gyre. The concentrations of DFe presented large variability with highest values observed at both extremities of the transect. In the Chilean upwelling, DFe concentrations ranged between 1.2–3.9 nM. These high values result from inputs from the continental margin and are likely maintained by anoxic conditions in the water corresponding to the Oxygen Minimum Zone (OMZ). In subsurface waters near the Marquesas, that were also associated with the extension of the OMZ, DFe concentrations varied between 0.15–0.41 nM. Vertical transport of this water by mesoscale activity eastward of the archipelago may explain the dissymmetric east-west distribution of chlorophyll-a evidenced by satellite images. Using the new tracer Fe*=DFe−rFe:P (PO43−) we show that DFe was in deficit compared to PO43− resulting from the remineralisation of organic matter. This suggests that the Marquesas islands and the surrounding plateau are not a significant source of DFe. In the gyre, DFe concentrations in the upper 350 m water column were around 0.1 nM and the ferricline was located well below the nitracline. These low concentrations reflect the low input of DFe from the atmosphere, from the ventilation of the upper thermocline with water containing low DFe, and from the low biological activity within this ultra oligotrophic gyre.

Picoplankton diversity in the South-East Pacific Ocean from cultures

Abstract. In late 2004, the BIOSOPE cruise sailed between the equatorial influenced waters off the Marquesas Islands and the nutrient enriched waters of the Chilean upwelling. Along the way, it explored the Southeast Pacific gyre centred around Easter Island, which is probably the most oligotrophic oceanic region on earth. During this cruise, we undertook a vigorous effort to isolate novel photosynthetic picoplanktonic eukaryotes. Two strategies were attempted on board: enrichment of filtered samples with culture medium and sorting of specific populations by flow cytometry based on size and chlorophyll fluorescence. Over 1900 pre-cultures were started and then further purified by flow cytometry, serial dilution or pipette isolation to yield a total of 212 strains. These strains were characterized morphologically and for more than 50% of them, genetically, through partial sequencing of the 18 S rRNA gene. Among the characterized strains, the largest number belongs to stramenopiles (Heterokontophyta) with a record of 38 strains belonging to the species Pelagomonas calceolata (Pelagophyceae). Strains from the recently described genera Bolidomonas and Florenciella have been re-isolated for the first time since their description. Two other abundant groups are the Chlorophyta, especially Prasinophyceae, and the Haptophyta, especially the genera Phaeocystis and Emiliania. A limited number of heterotrophic flagellates have also been isolated, all of them belonging to groups containing known species. Finally, over a dozen of unicellular cyanobacterial Synechococcus strains have been obtained, some forming unusual short chains. Overall our strategy was quite successful since it allowed us to isolate a large number of picoplankton strains. Still it failed in two respects. First, apparently very few novel taxa have been obtained. One set of strains is related to Prasinoderma coloniale (Prasinococcales, Prasinophyceae) but their sequences are sufficiently different from the latter to probably belong to a new genus or species. The sequences of two other strains, unfortunately later lost, were phylogenetically affiliated to stramenopile environmental sequences, probably corresponding to a new algal class. Second, very few strains have been obtained from the very oligotrophic central gyre itself. In order to be successful, future work in similar waters should probably combine flow cytometry sorting with culture media and cultivation approaches specifically developed for oligotrophic water species.