Microfossils identification, especially in very old rocks, is extremely challenging because morphological and chemical signatures of microfossils are subtle and inevitably altered with aging. Chert nodules from the Doushantuo Formation in the Yangtze Gorges area of South China have captured significant interest due to their remarkable preservation of Ediacaran microfossils. To understand the taphonomic processes leading to an exceptional preservation of microbes in these rocks, we studied the morphological and chemical features of microfossils within the lower Doushantuo Formation chert nodules down to atomic scales via advanced microscopy techniques. Our results align with previous studies, confirming that most microfossils there are preserved by silicification. Further analysis of a representative filamentous microfossil, Polytrichoides lineatus, reveals that both the cell wall (or extracellular sheath) and cytoplasm are preserved by loose aggregates of subrounded or irregular quartz grains, along with patchy organic residuals, which are distinctive from the closely packed and angular-shaped quartz grains in the non-fossil matrix of the chert nodule. The cell wall or extracellular sheath likely provided narrower spaces and more nucleation sites for silicification, resulting in smaller quartz grains (i.e., 115 ± 42 nm) compared to those formed in the cytoplasm (i.e., 1150 ± 258 nm). The permeation and precipitation of quartz grains within the cell wall or extracellular sheath could contribute to an exceptional preservation of subcellular structures. This study offers valuable insights into the preservation of microbes in the Doushantuo Formation chert nodules and even older siliceous sedimentary rocks.
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