Characterization Of Bacterial Species Research Articles

Enzymatic Activity Profiling Using an Ultrasensitive Array of Chemiluminescent Probes for Bacterial Classification and Characterization.

Identification and characterization of bacterial species in clinical and industrial settings necessitate the use of diverse, labor-intensive, and time-consuming protocols as well as the utilization of expensive and high-maintenance equipment. Furthermore, while cutting-edge identification technologies such as mass spectrometry and PCR are highly effective in identifying bacterial pathogens, they fall short in providing additional information for identifying bacteria not present in the databases upon which these methods rely. In response to these challenges, we present a robust and general approach to bacterial identification based on their unique enzymatic activity profiles. This method delivers results within 90 min, utilizing an array of highly sensitive and enzyme-selective chemiluminescent probes. Leveraging our recently developed technology of chemiluminescent luminophores, which emit light under physiological conditions, we have crafted an array of probes designed to rapidly detect various bacterial enzymatic activities. The array includes probes for detecting resistance to the important and large class of β-lactam antibiotics. The analysis of chemiluminescent fingerprints from a diverse range of prominent bacterial pathogens unveiled distinct enzymatic activity profiles for each strain. The reported universally applicable identification procedure offers a highly sensitive and expeditious means to delineate bacterial enzymatic activity fingerprints. This opens new avenues for characterizing and identifying pathogens in research, clinical, and industrial applications.

Characterization of bacterial species and antibiotic resistance observed in Seoul, South Korea's popular Gangnam-gu area

Public transportation facilities, especially road crossings, which raise the pathogenic potential of urban environments, are the most conducive places for the transfer of germs between people and the environment. It is necessary to study the variety of the microbiome and describe its unique characteristics to comprehend these relationships. In this investigation, we used 16 S rRNA gene sample sequencing to examine the biological constituents and inhalable, thoracic, and alveolar particles in aerosol samples collected from busy areas in the Gangnam-gu district of the Seoul metropolitan area using a mobile vehicle. We also conducted a comparison analysis of these findings with the previously published data and tested for antibiotic resistance to determine the distribution of bacteria related to the human microbiome and the environment. Actinobacteria, Cyanobacteria, Bacteriodetes, Proteobacteria, and Firmicutes were the top five phyla in the bacterial 16 S rRNA libraries, accounting for >90 % of all readings across all examined locations. The most prevalent classes among the 12 found bacterial classes were Bacilli (45.812 %), Gammaproteobacteria (25.238 %), Tissierellia (13.078 %), Clostridia (5.697 %), and Alphaproteobacteria (5.142 %). The data acquired offer useful information on the variety of bacterial communities and their resistance to antibiotic drugs on the streets of Gangnam-gu, one of the most significant social centers in the Seoul metropolitan area. This work emphasizes the relevance of biological particles and particulate matter in the air, and it suggests more research is needed to perform biological characterization of the ambient particulate matter.

Isolation and Characterization of Bacterial Species from Ain Mud Volcano, Iran

Along the coastal belt of Makran, on the southeastern margin of Iran, there are several active and inactive mud volcanoes with different morphologies. Ain—an actively bubbling eye-shaped mud pool—is one of these unique geological phenomena. Present study indicates the first overview of the bacterial diversity of this mud volcano obtained by culture techniques. For this purpose, two samples were collected at two different depths of the mud pool and were cultivated on two different nutrient culture media. A total of 13 isolates were randomly chosen for further phenotypic and genotypic characterization. Growth of the isolates occurred at 25–42°C, pH 8–10 and 0–10% NaCl, indicating that most of them were haloalkaliphiles. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the bacterial isolates belonged to three major taxa: Gammaproteobacteria (genera: Marinobacter, Nitrincola, Stentrophomonas), Actinobactera (genera: Kocuria, Brevibacterium, Dietzia) and Firmicutes (genus Planomicrobium). Gammaproteobacteria were the most abundant, following Actinobacteria and Firmicutes. Most of the strains isolated in the present study had the ability to produce extracellular hydrolytic enzymes such as lipases, amylases, proteases and DNases, making them important biotechnologically.

Isolation and Characterization of Bacterial Species from Respiratory Tracts of Cattle Slaughtered in Addis Ababa City, Central Ethiopia

Isolation and Characterization of Bacterial Species from Respiratory Tracts of Cattle Slaughtered in Addis Ababa City, Central Ethiopia

Isolation and Characterization of Bacterial Species from Enteric Fever Suspected Human Cases of Mymensingh Medical College Hospital

A total of 17 stool samples were collected from enteric fever suspected patients of Mymensingh Medical College Hospital, Mymensingh, Bangladesh. Results of morphological, biochemical examinations and pathogenicity test revealed Escherichia coli (47%), Klebsiella spp. (41%), Citrobacter spp. (29%). In cultural examination, all Escherichia coli showed metallic sheen on EMB agar, Klebsiella spp. showed moist shiny mucoid colonies and Citrobacter spp. showed large convex colorless dwarf colonies on MacConkey agar. In biochemical examination, all the isolates fermented five basic sugars with the production of acid and gas where the Citrobacter spp. were late lactose fermenter. Escherichia coli was indole and MR positive but V-P negative, Klebsiella spp. were V-P positive but MR and Indole negative and Citrobacter spp. were MR positive but V-P and Indole negative. All isolated bacterial species were sensitive to ciprofloxacin but resistant to amoxicillin. Salmonella typhi or Salmonella paratyphi organisms were not present in the stool samples examined. This may be due to collection of samples from patient having antibiotic therapy with Ceftriaxone through intravenous route for 3 days prior to collection of samples. From this study, it may be concluded that Escherichia coli, Kelbsiella spp. and Citrobacter spp. may be commonly present in enteric fever suspected patients or they may produce enteric fever like symptoms in human.DOI: http://dx.doi.org/10.3329/pa.v20i1-2.16857 Progress. Agric. 20(1 & 2): 85 – 92, 2009

Molecular characterization of bacterial species isolated from the leaf litter of Tectona grandis

Bacteria were isolated by the Dilution Plate Method from the litter of Tectona grandis . The bacteria were identified using biochemical and physiological test. 16s RNA technique was used for molecular characterization of isolated strains. The phylogenetic tree was prepared to understand the evolutionary relationship of the strain with other bacteria. The sequences have been submitted to NCBI, genebank, Canada.

A novel concept combining experimental and mathematical analysis for the identification of unknown interspecies effects in a mixed culture

Bacteria in natural habitats only occur in consortia together with various other species. Characterization of bacterial species, however, is normally done by laboratory testing of pure isolates. Any interactions that might appear during growth in mixed-culture are obviously missed by this approach. Existing experimental studies mainly focus on two-species mixed cultures with species specifically chosen for their known growth characteristics, and their anticipated interactions. Various theoretical mathematical studies dealing with mixed cultures and possible interspecies effects exist, but often models cannot be validated due to a lack of experimental data. Here, we present a concept for the identification of interspecies effects in mixed cultures with arbitrary and unknown single-species properties. Model structure and parameters were inferred from single-species experiments for the reproduction of mixed-culture experiments by simulation. A mixed culture consisting of the three-species Pseudomonas aeruginosa, Burkholderia cepacia, and Staphylococcus aureus served as a model system. For species-specific enumeration a quantitative terminal restriction length polymorphism (qT-RFLP) assay was used. Based on models fitted to single-species cultivations, the outcome of mixed-culture experiments was predicted. Deviations of simulation results and experimental findings were then used to design additional single-cell experiments, to modify the corresponding growth kinetics, and to update model parameters. Eventually, the resulting mixed-culture dynamics was predicted and compared again to experimental results. During this iterative cycle, it became evident that the observed coexistence of P. aeruginosa and B. cepacia in mixed-culture chemostat experiments cannot be explained on the basis of glucose as the only substrate. After extension of growth kinetics, that is, for use of amino acids as secondary substrates, mixed-culture simulations represented the experimental findings very well. According to the model structure, as motivated by single-species experiments, the growth of P. aeruginosa and B. cepacia on glucose and amino acids could be assumed to be independent of each other. In contrast, both substrates are taken up simultaneously by S. aureus.

Isolation and Characterization of Bacterial Species from Surgical and Non-surgical Wounds Located on Body Surface of Buffaloes, Cattles, Sheep and Goats

Isolation and Characterization of Bacterial Species from Surgical and Non-surgical Wounds Located on Body Surface of Buffaloes, Cattles, Sheep and Goats

Reverse transcriptase-PCR analysis of bacterial rRNA for detection and characterization of bacterial species in arthritis synovial tissue.

Onset of rheumatoid arthritis (RA) is widely believed to be preceded by exposure to some environmental trigger such as bacterial infectious agents. The influence of bacteria on RA disease onset or pathology has to date been controversial, due to inconsistencies between groups in the report of bacterial species isolated from RA disease tissue. Using a modified technique of reverse transcriptase-PCR amplification, we have detected bacterial rRNA in the synovial tissue of late-stage RA and non-RA arthritis controls. This may be suggestive of the presence of live bacteria. Sequencing of cloned complementary rDNA (crDNA) products revealed a number of bacterial sequences in joint tissue from each patient, and from these analyses a comprehensive profile of the organisms present was compiled. This revealed a number of different organisms in each patient, some of which are common to both RA and non-RA controls and are probably opportunistic colonizers of previously diseased tissue and others which are unique species. These latter organisms may be candidates for a specific role in disease pathology and require further investigation to exclude them as causative agents in the complex bacterial millieu. In addition, many of the detected bacterial species have not been identified previously from synovial tissue or fluid from arthritis patients. These may not be easily cultivable, since they were not revealed in previous studies using conventional in vitro bacterial culture methods. In situ hybridization analyses have revealed the joint-associated bacterial rRNA to be both intra- and extracellular. The role of viable bacteria or their nucleic acids as triggers in disease onset or pathology in either RA or non-RA arthritis controls is unclear and requires further investigation.