Soil Microbial Community Characteristics Research Articles

Effects of wildfire on soil microbial communities in karst forest ecosystems of southern Guizhou Province, China.

Wildfires are unpredictable disturbances with profound effects on soil properties and microbial communities within forest ecosystems. However, knowledge of post-fire microbial communities in karst forests remains limited. In this study, microbial amplicon sequencing techniques were employed to investigate the impact of wildfires on the composition, diversity, function, and co-occurrence network of soil microbial communities in karst forest landscapes and to identify the key soil physicochemical factors affecting the post-fire microbial communities. The wildfire affected the fungal community to a greater extent than the bacterial community, with the former shifting from a dominance of Basidiomycota to Ascomycota at the phylum level, while the relative abundance of Actinobacteria increased significantly in the bacterial community. Moreover, the wildfire increased the α-diversity of the microbial community and changed the β-diversity. Network analysis indicated significant reductions in the complexity of microbial community networks and the hub microbiome in burned soils compared to those of unburned soils. Functional predictions indicated an increase in the highly abundant functional taxa of chemoheterotrophic and aerobic chemoheterotrophic bacteria, along with a significant rise in saprotrophic functional fungal taxa following the fire. In addition, soil organic matter, total nitrogen, total phosphorus, and soil water content emerged as key soil physicochemical factors affecting post-fire soil microbial communities in the karst forest. Overall, this study revealed the structural and functional characteristics of soil microbial communities and their key influencing factors after a fire in a karst forest, which will provide a valuable theoretical basis for ecosystem restoration after a wildfire.IMPORTANCEDespite the significant impacts of wildfires on forest ecosystems, most existing studies have largely focused on boreal and Mediterranean coniferous forest types, with limited research on the impacts of coniferous and broadleaf forest types in subtropical karst regions. This study reveals the effects of wildfires on soil microbial communities of coniferous and broadleaf forest types in a karst forest. The results of this study not only improve the understanding of the effects of wildfires on the composition, diversity, function, and network of soil microbial communities but also provide a meaningful theoretical basis for post-fire ecosystem restoration in the karst forest.

Soil bacterial community characteristics and influencing factors in different types of farmland shelterbelts in the Alaer reclamation area.

To investigate the effects of various types of farmland shelterbelts on soil quality and soil bacterial community diversity, this study focused on soil samples from four different shelterbelt types in the Alaer reclamation area, including Populus euphratica Oliv.- Populus tomentosa Carrière (PP), Elaeagnus angustifolia L.- Populus euphratica Oliv. (EP), Populus alba var. pyramidalis Bunge (P), and Salix babylonica L. (S). We analyzed their physical, chemical, biological properties as well as the differences in bacterial community structure, and explored the influencing factors on soil microbial community characteristics through microbial correlation network analysis. The results showed that: (1) There were significant differences in soil properties among the four types of farmland shelterbelts (p < 0.05), with P soils exhibiting the highest levels of organic matter, total nitrogen, and total phosphorus contents. (2) The Alpha diversity indices of soil bacteria showed significant differences among the four types of farmland shelterbelts (p < 0.05), with the P soils displayed the highest Chao1 and Shannon indices. (3) There were differences in the composition and abundance of dominant soil bacterial communities among different farmland shelterbelts, notably, the abundances of Verrucomicrobia, Acidobacteria, and Planctomycetes were significantly higher in P soils compared to the other three types. (4) The complexity of the correlation network between microbial species and environmental factors was highest in EP soils, soil microbial biomass nitrogen and available phosphorus were the main influencing factors. These findings indicated that different types of farmland shelterbelts had significant impacts on soil properties and soil bacterial communities. Soil bacterial communities were regulated by soil properties, their changes reflected a combined effect of soil characteristics and tree species.

Depth-dependent effects of forest diversification on soil functionality and microbial community characteristics in subtropical forests

Soil microbes are critical to the maintenance of forest ecosystem function and stability. Forest diversification, such as monocultures versus mixed forests stands, can strongly influence microbial community patterns and processes, as well as their role in soil ecosystem multifunctionality, such as in subtropical forest ecosystems. However, less is known about these patterns and processes vary with soil depth. Here, we investigated the results of an eight-year forest diversification field experiment comparing the soil ecosystem multifunctionality, bacterial and fungal community assembly, and network patterns in mixed versus monoculture plantations along vertical profiles (0–80 cm depth) in a subtropical region. We found that the introduction of broadleaf trees in coniferous monocultures led to enhanced synergies between multiple functions, thus improving soil multifunctionality. The effects of mixed plantations on the functional potential in top soils were greater than in deep soils, especially for carbon degradation genes (apu, xylA, cex, and glx). Microbial community assembly in the top layer, particularly in mixed plantations, was dominated by stochastic processes, whereas deterministic were more important in the deep layer. Soil microbial network complexity and stability were higher in the top layer of mixed plantations, but in the deep layer was monoculture. Interestingly, the changes in microbial communities and multifunctionality in the top layer were mainly related to variation in nutrients, whereas those in the deep were more influenced by soil moisture. Overall, we reveal positive effects of mixed forest stands on soil microbial characteristics and functionality compared to that of monocultures. Our findings highlighted the importance of enhancing functional diversity through the promotion of tree species diversity, and managers can better develop forest management strategies to promote soil health under global change scenarios.

Microbial Community and Functions Depending on Tillage and Straw Returning Management: Consequences for Soil Health and Ecosystem Services

ABSTRACTTillage and straw returning are promising practices to improve soil quality, especially because of the unclear controlling effects on microbial communities and functions. A 5‐year field experiment in a winter wheat‐summer maize cropping system was implemented in the North China Plain to address this research gap. Management practices were deep tillage, rotary tillage, and no‐tillage, each with either wheat only or both wheat and maize straw returning. Shotgun metagenomic sequencing was performed to investigate the microbial community, diversity, co‐occurrence network, and function in the topsoil (0–20 cm). The associations between soil physiochemical properties and microbial community characteristics were also evaluated. Rotary tillage with only wheat straw returning (RTS) significantly increased Shannon's diversity index by 0.24%–1.71% compared to other treatments. No‐tillage with only wheat straw returning (NTS) showed the most stable microbial network with the highest betweenness centrality (199.09), average path distance (2.31), and modularity (0.50). NTS had the highest relative abundance of microbial carbon (C), nitrogen (N) metabolisms, and C fixation pathways. Among deep tillage practices, both wheat and maize straw returning (DTD) were more beneficial to the stability of microbial networks than only wheat straw returning (DTS), yet without improvement in microbial diversity and function. In conclusion, microbial community and function are practical predictors of variations in soil nutrient availability, and pH value in response to different tillage and residue management practices. In particular, our study provides a basis for the development of a sustainable crop residue management system.

Mixed Eucalyptus plantations enhance soil organic carbon accumulation and chemical stability through soil microbial community and multifunctionality

Forest conversion can impact soil organic carbon (SOC) fixation and ecosystem functions. The newly proposed “evenness of SOC chemical components” index can indicate the permanence of stored SOC during environmental disturbances. However, how the mixing of tree species impacts SOC accumulation and persistence and changes in soil microbial communities and multifunctionality remain unknown. Thus, we conducted a field experiment (11 years) of monospecific Eucalyptus urophylla × E. grandis plantation for evaluating the influences of the mixed planting of a non-nitrogen (N)-fixing tree, Castanopsis hystrix, and an N-fixing tree, Dalbergia odorifera, on SOC accumulation and chemical stability. Compared with pure plantations, mixed Eucalyptus plantations (particularly those mixed with D. odorifera) exhibited significantly increased SOC concentrations by 28.60–33.71 % and increased SOC chemical component evenness by 3.96–4.67 % (P < 0.05). We also found that the concentrations and chemical component evenness of SOC were strongly linked with litter quality, soil N, phosphorus and their availability, multifunctionality, microbial activity, carbon use efficiency (CUE), biomass, diversity, and network complexity. Furthermore, tree species mixing increased litter quality, soil nutrient availability, microbial biomass, activity, diversity, CUE, and network complexity. Soil microbial anabolism, community characteristics and multifunctionality influenced the SOC concentrations and SOC chemical components evenness. Specifically, microbial diversity enhanced the concentrations and chemical component evenness of SOC by increasing network complexity and soil multifunctionality. These findings revealed differential responses and mechanistic controls of SOC accumulation and chemical stability in different Eucalyptus planting patterns. Overall, mixed plantations, particularly those in which N-fixing species were introduced, effectively improved SOC accumulation and stabilization by positively altering soil quality and microbial properties, potentially representing a sustainable forestry management strategy to improve soil C benefits and multifunctionality in forest ecosystems.

Effects of Biochar and Straw Return on Soil Microbial Community Characteristics and Functional Differences in Saline Water Drip Irrigation Cotton Fields

In arid areas, fresh water resources are insufficient, and agricultural water mainly depends on shallow saline groundwater. However, long-term saline irrigation will cause soil salt accumulation and soil environment deterioration, which is not conducive to crop growth. In this study, based on the long-term irrigation of fresh water (0.35 dS·m-1, FW) and saline water (8.04 dS·m-1, SW), biochar (3.7 t·hm-2, BC) and straw (6 t·hm-2, ST) were added to the soil by an equal-carbon design. The aim was to clarify the effects of biochar and straw returning on the physical and chemical properties and microbial community structure of salinized soil. The results showed that saline irrigation significantly increased soil water content, electrical conductivity, available phosphorus, and total carbon content but significantly decreased pH value and available potassium content. The contents of available phosphorus, available potassium, and total carbon in soil were significantly increased by biochar and straw returning, but the conductivity value of soil irrigated with saline water was significantly decreased. The dominant bacteria in each treatment were Proteobacteria, Actinomycetes, Acidobacteria, Chloromycetes, and Blastomonas. Saline water irrigation significantly increased the relative abundance of Blastomonas and Proteobacteria but significantly decreased the relative abundance of Acidobacteria and Actinobacteria. Under the condition of fresh water irrigation, the relative abundance of Chlorocurvula was significantly reduced by the return of biochar. Straw returning significantly increased the relative abundance of Proteobacteria but significantly decreased the relative abundance of Acidobacteria, Actinomyces, Chloromyces, and Blastomonas. Under saline irrigation, the relative abundance of Chlorocurvula and Blastomonas were significantly reduced by biochar return to field. Straw returning significantly increased the relative abundance of Proteobacteria but significantly decreased the relative abundance of Acidobacteria, Actinomyces, Chloromyces, and Blastomonas. LEfSe analysis showed that saline irrigation decreased the potential markers and functional numbers of soil microorganisms.Under saline irrigation, biochar returning increased the number of potential markers and functions of soil microorganisms. Straw returning to field increases the number of potential markers of soil microorganisms. RDA results showed that soil microbial community and functional structure were significantly correlated with EC1:5, SWC, and pH. Saline water irrigation will deteriorate the soil environment, which is not conducive to agricultural production, among which EC1:5, SWC, and pH are important factors driving changes in soil microbial community and functional structure. Using biochar and straw to return to the field can reduce the harm of salt to soil and crops, laying a foundation for improving agricultural productivity.

Nitrogen application increases the productivity of perennial alpine cultivated grassland by improving soil physicochemical properties and microbial community characteristics

Nitrogen application increases the productivity of perennial alpine cultivated grassland by improving soil physicochemical properties and microbial community characteristics

Soil Microbial Community Characteristics and Their Effect on Tea Quality under Different Fertilization Treatments in Two Tea Plantations.

Fertilization is an essential aspect of tea plantation management that supports a sustainable tea production and drastically influences soil microbial communities. However, few research studies have focused on the differences of microbial communities and the variation in tea quality in response to different fertilization treatments. In this work, the soil fertility, tea quality, and soil microbial communities were investigated in two domestic tea plantations following the application of chemical and organic fertilizers. We determined the content of mineral elements in the soil, including nitrogen, phosphorus, and potassium, and found that the supplementation of chemical fertilizer directly increased the content of mineral elements. However, the application of organic fertilizer significantly improved the accumulation of tea polyphenols and reduced the content of caffeine. Furthermore, amplicon sequencing results showed that the different ways of applying fertilizer have limited effect on the alpha diversity of the microbial community in the soil while the beta diversity was remarkably influenced. This work also suggests that the bacterial community structure and abundance were also relatively constant while the fungal community structure and abundance were dramatically influenced; for example, Chaetomiaceae at the family level, Hypocreaceae at the order level, Trichoderma at the genus level, and Fusarium oxysporum at the species level were predominantly enriched in the tea plantation applying organic fertilizer. Moreover, the bacterial and fungal biomarkers were also analyzed and it was found that Proteobacteria and Gammaproteobacteria (bacteria) and Tremellomycetes (fungi) were potentially characterized as biomarkers in the plantation under organic fertilization. These results provide a valuable basis for the application of organic fertilizer to improve the soil of tea plantations in the future.

Aggregate composition directly affects the characteristics of soil microbial and nematode communities in a chronosequence of Chinese fir plantations

AbstractMaintaining soil biological diversity is an effective approach in facilitating Chinese fir plantations' sustainable development. However, dynamic characteristics of soil microbial and nematode communities during Chinese fir planting remain unclear, particularly on the aggregate scales, which are the main sites of soil biological activity. Therefore, the research aims to explore how stand age (3, 9, 17, and 26 years) of Chinese fir plantations affects soil microbial biomass (including bacteria, fungi, and actinomycetes, based on the phospholipid fatty acid method), nematode abundances (including bacterivores, fungivores, plant parasites, and omnivores‐predators, based on the modified Baermann funnel method), and their diversity within aggregates of differing sizes (&gt;2, 2–1, 1–0.25, and &lt;0.25 mm). According to the findings, both aggregate size and stand age were major factors affecting soil microbes and nematodes in Chinese fir plantations. Specifically, soil microbial biomass (mainly bacteria), nematode abundances (except fungivores), and their diversity peaked within large macro‐aggregates (&gt;2 mm), and the ranking order for stand ages was 17 &gt; 9 ≈ 3 &gt; 26 years. As the main fractions of soil aggregates in Chinese fir plantations, large macro‐aggregates had suitable internal environments for soil microbial propagation and nematode growth and mainly accumulated at 17 years, which caused the prosperity of soil microbes and nematodes at this stand age. Moreover, the partial least squares path model demonstrated that the influence of stand age on soil microbes and nematodes was indirect; but rather, the aggregate composition played a direct role in shaping their communities. Therefore, in order to maintain soil biological diversity, large macro‐aggregates should be protected during the growth of Chinese fir, especially at the late stage (from 17 to 26 years). Overall, these results could provide valuable insights into Chinese fir plantations' sustainable development.

Soil Nutrient, Enzyme Activity, and Microbial Community Characteristics of E. urophylla × E. grandis Plantations in a Chronosequence

The effects of continuous Eucalyptus cropping on soil properties and microbial characteristics and the specific factors influencing tree species growth remain elusive. In this study, three Eucalyptus stands of three different ages were selected, and soil nutrients, microbial biomass, enzyme activity, microbial community composition, and diversity were quantified for each. The findings indicated a significant decline in soil pH, soil cation exchange, soil organic matter, and available phosphorus content with the plantation age. Simultaneously, there was an observed increase in soil alkaline hydrolyzed nitrogen content. In addition, urease and acid phosphatase activities did not show a significant difference with age. In spite of this, catalase activity exhibited a decline corresponding to the advancement in plantation age. The carbon and nitrogen content of the soil microbial biomass increased with the progression of Eucalyptus planting time. The high-throughput sequencing data demonstrated a reduction in microbial diversity in Eucalyptus soils as the planting age increased. Interestingly, the microbial community structure exhibited minimal alterations, and did not exhibit a predominantly oligotrophic state overall. In conclusion, the study results showed that short-term successive Eucalyptus cropping exerts a significant negative impact on the soil system.

Vertical differentiation drives the changes in the main microflora and metabolites of carbon and nitrogen cycling in the early freeze-thaw period in the Qinghai Lake Basin.

Global climate change has altered the frequency of soil freeze-thaw cycles, but the response of soil microorganisms to different elevation gradients during the early freeze-thaw period remains unclear. So far, the influence of the altitudinal gradient on the microbial community and metabolic characteristics in the early freeze-thaw period of the Qinghai Lake Basin remains unclear. To this end, we collected soil at different elevations in the early freeze-thaw period of the Qinghai Lake Basin and investigated the influence of the elevation gradient on soil microbial community characteristics and soil metabolic processes as well as the corresponding environmental driving mechanism by high-throughput sequencing and LC-MS (Liquid Chromatograph-Mass Spectrometer) nontargeted metabolite determination. The results showed that Proteobacteria were the dominant microflora in the Qinghai Lake Basin. The dominant phyla associated with carbon and nitrogen are Proteobacteria and Firmicutes, both of which are significantly affected by elevation. The soil physicochemical factors jointly affected the soil microbial communities and metabolism. Total phosphorus nitrate nitrogen and pH were the main driving factors of the microbial community, and metabolites were sensitive to changes in chemical factors. In short, the microbial community structure and function, soil physicochemical factors and soil metabolic processes were significantly affected by the altitudinal gradient in the early freeze-thaw period, while the microbial community diversity showed no significant response to the altitudinal gradient. Additionally, a high potassium content in the soil may promote the growth and reproduction of bacteria associated with carbon and nitrogen cycling, as well as the production of metabolites.

Coupling and decoupling of soil carbon and nutrients cycles at different salinity levels in a mangrove wetland: Insights from CUE and enzymatic stoichiometry

Soil carbon (C), nitrogen (N), and phosphorus (P) cycling, in conjunction with microbial metabolism, varies significantly with salinity in coastal areas. However, microbial metabolism limitation on salinity levels has received limited attention. Based on soil microbial carbon use efficiency and enzymatic stoichiometry, microbial nutrient limitation characteristics of soil microbial communities in different salinity levels (4.45 mS·cm−1 - 17.25 mS·cm−1) in a subtropical mangrove wetland were investigated. Compared to low-salinity levels, the activity of soil C-acquiring enzyme activities, enzymatic C:N ratios and enzymatic C:P ratios decreased with medium salinity levels and high salinity levels. Soil microbial metabolism was primarily constrained by C and N at different salinity levels. Boosted regression tree analysis revealed that abiotic factors had the greatest influence on C and N limitation of microbial metabolism at different salinity levels. This study underscores the significance of salinity in microbial metabolic processes and enhances our understanding of how future salinity changes induced by rising sea levels will affect soil carbon and nutrient cycling in coastal wetlands.

Variations in Soil Organic Carbon Fractions and Microbial Community in Rice Fields under an Integrated Cropping System

Combining rice cultivation and aquaculture into an integrated cropping system is a management approach that enhances the sustainability of rice fields. However, how soil characteristics influence soil microbial community characteristics following implementation of such an integrated system, particularly in the waterlogged paddies of the Pearl River Delta, is poorly understood. An integrated cropping system (rice–fish–duck integrated cropping system, RFD) and a rice–pepper rotation system (RPS) were compared using a conventional rice cropping system (CRS) as a reference. We used phospholipid-derived fatty acid (PLFA) analysis to assess soil microbial community structure and function and measured soil nutrient content and organic carbon fractions. Our results indicated that the soil nutrient content, organic carbon fractions, and C-hydrolyzing activities differed among the cropping systems. The RFD resulted in higher microbial PLFA concentrations and a lower ratio of Gram-positive to Gram-negative bacteria than CRS. Additionally, the integrated system reduced microbial nutrient stress by increasing soil pH. Further analysis revealed that active soil organic carbon significantly affected the soil microbial community. Thus, the RFD integrated cropping systems that alter the combined actions of pH and active organic carbon fractions can be used to improve soil microbial communities.

The Impact and Determinants of Mountainous Topographical Factors on Soil Microbial Community Characteristics.

Soil bacterial and fungal community communities play significant ecological functions in mountain ecosystems. However, it is not clear how topographic factors and soil physicochemical properties influence changes in microbial community structure and diversity. This study aims to investigate how altitude and slope orientation affect soil physicochemical properties, soil microbial communities, and their contributing factors. The assessment was conducted using Illumina MiSeq sequencing in various altitude gradients and on slopes with different aspects (shady slopes and sunny slopes) in the subalpine meadow of Dongling Mountain, Beijing. Topographical factors had a significant effect on soil physicochemical properties: the primary factors determining the structure of microbial communities are total potassium (TK), ammonium nitrogen (NH4+-N), and soil organic carbon (SOC). There was no significant change in the diversity of the bacterial community, whereas the diversity of the fungal community displayed a single-peaked trend. The effect of slope orientation on microbial communities was not as significant as the effect of elevation on them. The number of bacterial communities with significant differences showed a unimodal trend, while the number of fungal communities showed a decreasing trend. The co-occurrence network of fungal communities exhibits greater intricacy than that of bacterial communities, and bacterial communities are more complex in soils with sunny slopes compared to soils with shady slopes, and the opposite is true for fungal communities. The identification of the main factors that control soil microbial diversity and composition in this study, provided the groundwork for investigating the soil microbial response and adaptation to environmental changes in subalpine meadows.

Potentilla parvifolia strongly influenced soil microbial community and environmental effect along an altitudinal gradient in central Qilian Mountains in western China.

The Qilian Mountains (QLMs) form an important ecological security barrier in western China and a priority area for biodiversity conservation. Potentilla parvifolia is a widespread species in the mid-high altitudes of the QLMs and has continuously migrated to higher altitudes in recent years. Understanding the effects of P. parvifolia on microbial community characteristics is important for exploring future changes in soil biogeochemical processes in the QLMs. This study found that P. parvifolia has profound effects on the community structure and ecological functions of soil microorganisms. The stability and complexity of the root zone microbial co-occurrence network were significantly higher than those of bare soils. There was a distinct altitudinal gradient in the effect of P. parvifolia on soil microbial community characteristics. At an elevation of 3204 m, P. parvifolia promoted the accumulation of carbon, nitrogen, and phosphorus and increased sucrase activity and soil C/N while significantly improving the community richness index of fungi (p < .05) compared with that of bacteria and the relative abundance of Ascomycota. The alpha diversity of fungi in the root zone soil of P. parvifolia was also significantly increased at 3550 m altitude. Furthermore, the community similarity distance matrix of fungi showed an evident separation at 3204 m. However, at an altitude of 3750 m, P. parvifolia mainly affected the bacterial community. Potentilla parvifolia increased the bacterial community richness. This is in agreement with the findings based on the functional prediction that P. parvifolia favors the growth and enrichment of denitrifying communities at 3550 and 3750 m. The results provide a scientific basis for predicting the evolutionary trends of the effects of P. parvifolia on soil microbial communities and functions and have important implications for ecological governance in the QLMs.

High intensity perturbations induce an abrupt shift in soil microbial state

Soil microbial communities play a pivotal role in regulating ecosystem functioning. But they are increasingly being shaped by human-induced environmental change, including intense “pulse” perturbations, such as droughts, which are predicted to increase in frequency and intensity with climate change. While it is known that soil microbial communities are sensitive to such perturbations and that effects can be long-lasting, it remains untested whether there is a threshold in the intensity and frequency of perturbations that can trigger abrupt and persistent transitions in the taxonomic and functional characteristics of soil microbial communities. Here we demonstrate experimentally that intense pulses of drought equivalent to a 30-year drought event (<15% WHC) induce a major shift in the soil microbial community characterised by significantly altered bacterial and fungal community structures of reduced complexity and functionality. Moreover, the characteristics of this transformed microbial community persisted after returning soil to its previous moisture status. As a result, we found that drought had a strong legacy effect on bacterial community function, inducing an enhanced growth rate following subsequent drought. Abrupt transitions are widely documented in aquatic and terrestrial plant communities in response to human-induced perturbations. Our findings demonstrate that such transitions also occur in soil microbial communities in response to high intensity pulse perturbations, with potentially deleterious consequences for soil health.

Characteristics of rhizosphere and bulk soil microbial community of Chinese cabbage (Brassica campestris) grown in Karst area.

Understanding the rhizosphere soil microbial community and its relationship with the bulk soil microbial community is critical for maintaining soil health and fertility and improving crop yields in Karst regions. The microbial communities in the rhizosphere and bulk soils of a Chinese cabbage (Brassica campestris) plantation in a Karst region, as well as their relationships with soil nutrients, were examined in this study using high-throughput sequencing technologies of 16S and ITS amplicons. The aim was to provide theoretical insights into the healthy cultivation of Chinese cabbage in a Karst area. The findings revealed that the rhizosphere soil showed higher contents of organic matter (OM), alkaline hydrolyzable nitrogen (AN), available phosphorus (AP), total phosphorus (TP), available potassium (AK), total potassium (TK), total nitrogen (TN), catalase (CA), urease (UR), sucrase (SU), and phosphatase (PHO), in comparison with bulk soil, while the pH value showed the opposite trend. The diversity of bacterial and fungal communities in the bulk soil was higher than that in the rhizosphere soil, and their compositions differed between the two types of soil. In the rhizosphere soil, Proteobacteria, Acidobacteriota, Actinobacteriota, and Bacteroidota were the dominant bacterial phyla, while Olpidiomycota, Ascomycota, Mortierellomycota, and Basidiomycota were the predominant fungal phyla. In contrast, the bulk soil was characterized by bacterial dominance of Proteobacteria, Acidobacteriota, Chloroflexi, and Actinobacteriota and fungal dominance of Ascomycota, Olpidiomycota, Mortierellomycota, and Basidiomycota. The fungal network was simpler than the bacterial network, and both networks exhibited less complexity in the rhizosphere soil compared with the bulk soil. Moreover, the rhizosphere soil harbored a higher proportion of beneficial Rhizobiales. The rhizosphere soil network was less complicated than the network in bulk soil by building a bacterial-fungal co-occurrence network. Furthermore, a network of relationships between soil properties and network keystone taxa revealed that the rhizosphere soil keystone taxa were more strongly correlated with soil properties than those in the bulk soil; despite its lower complexity, the rhizosphere soil contains a higher abundance of bacteria which are beneficial for cabbage growth compared with the bulk soil.

Phytoremediation Effect and Soil Microbial Community Characteristics of Jiulong Iron Tailings Area, Jiangxi

The aim of this paper was to explore the remediation effect and mechanism of Wetland pine (Pinus elliottii), Chinese fir (Cunninghamia lanceolata (Lamb.) Hook), and Alder (Alnus cremastogyne Burkill) on heavy metal contaminated soil in the iron tailings of Jiulong Iron Tailings Area. At the same time, the specificity of plant rhizosphere and non-rhizosphere soil microbial community structure and ecological function were analyzed based on macrogenomic sequencing. The results showed that the dominant microbial genera in J1 (control) was Acidobacteria, followed by Proteobacteria and Actinobacteria. The microbial genera with the highest percentage of relative abundance in J2, J3, J4, J5, and J6 (J2, Wetland Pine rhizosphere; J3, Wetland Pine non-rhizosphere; J4, Chinese fir rhizosphere; J5, Alder rhizosphere; J6, Alder non-rhizosphere) were Proteobacteria, followed by Acidobacteria, and Actinobacteria. It was found that Proteobacteria promoted heavy metal solubilization, activated heavy metals, and converted their forms to improve plant uptake of heavy metals. This proves that the microorganisms of Proteobacteria are the key microbial genera in the study of regional heavy metal remediation. The antibiotic resistance genes (ARGs) in microorganisms can respond to the inducement of heavy metals. Here, we investigated the relationship between the abundance of soil microorganisms ARGs and heavy metal pollution in Jiulong Iron Tailings Area. There are significant differences in the quantity and category of ARGs in the rhizosphere and non-rhizosphere soil samples of the three tree species. The results of this study provide the foundation for the theory and practice of remediation of heavy metal contamination in soils of iron tailing areas in Jiulong Iron Tailings Area in similar stand conditions.

The response of soil respiration to land‐use change depends on soil microbial community being regulated by edaphic factors in the Loess Plateau, China

AbstractLand‐use change has significant influences on soil respiration (Rs) in terrestrial ecosystems. Soil microbes play critical roles in soil carbon cycling. Nevertheless, the specific mechanism of how changes in soil microbial properties are linked to the variation of Rs rate during land‐use change still remains poorly understood, especially in the Loess Plateau, China. Here, the characteristics of Rs rate and soil microbial community following the land‐use change from farmland to plantation/grassland were analyzed via an automated soil CO2 flux system and high‐throughput 16S rDNA gene sequencing. The afforestation altered soil microbial diversity and community composition, which was mainly explained by soil pH, temperature, organic matter, nitrate, alkali‐hydrolyzed nitrogen, and available phosphorus. The biomarkers of Bacteroidetes, Firmicutes, and Thaumarchaeota were found in farmland soil at the phylum level. The afforestation also significantly decreased Rs rate, which was closely related to Shannon's index, Simpson's index, and some microbial taxa, such as Bacteroidetes, Firmicutes, Nitrospirae, and Acidobacteria. Bacteroidetes, and Firmicutes were particularly expected to be important drivers of high Rs rate in farmland soil. Moreover, the microbial interaction was probably also an important factor affecting Rs rate. Our results indicate that the response of Rs to land‐use change depends on soil microbial community being regulated by soil physicochemical properties in the Loess Plateau, China.

Dynamic characteristics of soil heavy metals and microbial communities under moss cover at different successional stages in a manganese mining area.

The mining and smelting of manganese ores and the accumulation of slag not only pollute the environment and increase the threat to biodiversity, but also adversely affect the health of human and other organisms. Therefore, it's important to study the restoration of manganese mining area. Since mosses play an irreplaceable role in the ecological restoration of mine sites, this study is carried out in a slag heap area that has been in continuous operation for about 50years, and spatial variation is used instead of temporal variation to study the diversity of moss plants, the characteristics of soil heavy metal changes under moss cover, and the characteristics of bacterial communities in manganese mine sites at different time scales. A total of 20 moss taxa from 8 genera and 5 families are recorded, the dominant families are Bryaceae (50%) and Pottiaceae (25%), with the development of succession, the alpha-diversity index of mosses increases with the development of succession. The study area has a relatively high level of heavy metal contamination, the heavy metals Mn, V, Cu and Ni are significantly affected by succession in the Manganese mining area, and the soil heavy metal content generally shows a decreasing trend with the development of succession. Actinobacteriota, Proteobacteria, Chloroflexi Acidobacteriota and Gemmatimonadota are the dominant soil bacterial phyla in manganese mining areas (relative abundance > 10%), the composition of soil bacteria at different successional stages at the phylum level was the same, but the abundance of each bacterial community differed. The soil bacterial community in the manganese mining area is significantly affected by soil heavy metals.