The 2011 Tohoku-oki tsunami left a characteristic geochemical signature in the sediments of the Misawa harbor on the Aomori coastline (northern Japan), not only in vertical stratigraphy but also in lateral distribution. Suitable indicator compounds for the tsunami impact were used to identify and characterize the distribution of geochemical patterns within the harbor area. Specific compounds are illustrating the different emission sources and distribution during the 2011 tsunami. Petrogenic-derived markers, such as hopanes and polycyclic aromatic hydrocarbons, provide information about the tsunami-related destruction of facilities and technical material and the subsequent release of, for instance, oil and grease. Linear alkylbenzenes and diisopropylnaphthalene are used to identify sewage-derived contaminants released by the tsunami. Old burden markers such as dichlorodiphenyltrichloroethane and its metabolites or polychlorinated biphenyl signal erosion and rearrangement of contaminants present in the sediments prior to the tsunami. Distribution of the analyzed pollutant groups indicate the tsunami-related release through various emission sources and their potential origin. While petrogenic-derived pollutants revealed a significant local spread with hotspot formation near the release, sewage-derived compounds were widely distributed and originated from a diffuse source not necessarily located in the harbor area. In contrast to freshly released contaminants, old burden markers are characterized by erosion of contaminated pre-tsunami sediment, the remobilization of pollutants and subsequent deposition of these sediment-bound contaminants in the tsunami layer. The correlation between all pollutant groups by their preferred accumulation reveals that source-specific compounds show different emission sources but reveal also a topographical control of the pollutant distribution by the 2011 tsunami.