Chaotic systems are often used in cryptology applications thanks to their complex dynamic structures. By increasing the dynamic diversity of chaotic systems through fractional-order analysis, more complex systems for data security can be obtained. In this study, fractional calculus analyses of the Arneodo chaotic jerk system with cubic nonlinearity and its microcontroller-based chaotic masking application are presented. Numerical analyses such as bifurcation diagrams, spectral entropy complexity, and Lyapunov spectra are performed to examine the dynamic characteristics of the fractional-order system. The parametric analysis indicates the presence of chaotic states in the system for nearly all fractional-order values ranging from 0.55 to 1. In this manner, the study focuses on investigating the minimum applicable fractional-order value for use in secure communication applications, constituting the main contribution of this research. Consequently, the dynamic diversity and unpredictability of the cubic system are greatly increased. Moreover, two fractional-order Arneodo chaotic (FOAC) systems with distinct initial conditions are synchronized using a single-state fractional-order sliding mode controller (FOSMC). Finally, an innovative secure communication system based on a microcontroller is designed and implemented by employing the chaotic masking method. As anticipated, the voltage outputs of the microcontroller-based secure communication application demonstrated good agreement with the numerical simulations.