Abstract Climate change in the northern circumpolar regions is rapidly thawing organic-rich permafrost soils, releasing substantial dissolved CO2 and CH4 into fluvial systems. This mobilization impacts local ecosystems and global climate feedback loops, playing a crucial role in the Arctic carbon cycle. Here, we analyze the stable carbon (δ13C) and radiocarbon (F14C) isotopic composition of dissolved CO2 and CH4 in the Sagavanirktok and Kuparuk River watersheds on the North Slope, Alaska. By examining spatial and seasonal variations in these isotopic signatures, we identify patterns of carbon release and transport along the river continuum. We find consistent CO2 isotopic signatures across the fluvial continuum, reflecting a mixture of geogenic and biogenic sources integrated throughout the watershed. Bayesian mixing models further demonstrate a systematic depletion in 13C and 14C signatures of dissolved CO2 sources from spring to fall, indicating increasing contributions of aged carbon as the active layer deepens seasonally. This seasonal deepening allows percolating groundwater to access deeper, older soil horizons, transporting CO2 produced by aerobic and anaerobic soil respiration to streams and rivers. In contrast, we observe no clear relationships between the 13C and 14C compositions of dissolved CH4 and landscape properties. Given the reduced solubility of CH4, which facilitates outgassing and limits its transport in aquatic systems, the isotopic signatures are likely indicative of localized contributions from streambeds, adjacent water saturated soils, and lake outflows. Our study demonstrates that dissolved greenhouse gases are sensitive indicators of the release of old carbon from thawing permafrost and serve as early warning signals for permafrost carbon feedback. It establishes a crucial baseline for understanding their role in regional carbon cycling and Arctic environmental change.