Changes In Population Structure Research Articles

A framework for studying the effects of offshore wind energy development on birds and bats in the Eastern United States

Offshore wind energy development (OWED), while a key strategy for reducing carbon emissions, has potential negative effects to wildlife that should be examined to inform decision making and adaptive management as the industry expands. We present a conceptual framework to guide the long-term study of potential effects to birds and bats from OWED. This framework includes a focus on exposure and vulnerability as key determinants of risk. For birds and bats that are exposed to OWED, there are three main effects of interest that may impact survival and productivity: 1) collision mortality, 2) behavioral responses, including avoidance, displacement, and attraction, and 3) habitat-mediated effects to prey populations. If these OWED effects cause changes in survival and/or breeding success (e.g., fitness), they have the potential for population-level consequences, including changes in population size and structure. Understanding the influence of ecological drivers on exposure and effect parameters can help to disentangle the potential impacts of OWED from other stressors. We use this theoretical framework to summarize existing relevant knowledge and identify current priority research questions (n=22) for the eastern United States, where large-scale development of OWED is primarily in the planning and early construction phase. We also identify recommendations for study design and further prioritization of research topics.

Research on the Decoupling Relationship between Transportation Land and Population Growth: A Case of Guangdong Province in China

The imbalance between the population, transportation, and construction is an important factor affecting coordinated regional development in China. Using transportation land area and population data from 2010, 2015, and 2020 in 121 counties (cities and districts) of Guangdong Province, this study analyzes the spatiotemporal changes in transportation land and population structure. It explores the relationship between transportation land and population size changes using exploratory spatial data analysis (ESDA) and decoupling models. Research suggests the following: (1) From 2010 to 2020, the per capita transportation land in various districts and counties of Guangdong Province showed a hierarchical structure of “low center and high periphery”. Conversely, the proportion of transportation land to construction land displayed a “high center and low periphery” characteristic. (2) During the same period, the total amount of transportation land in the peripheral areas of the Pearl River Delta was higher than that in the PRD (the Pearl River Delta) and the gap widened each year. Meanwhile, the proportion of transportation land to construction land in the peripheral areas of the Pearl River Delta was consistently higher than that in the PRD. (3) From 2010 to 2015, the relationship between population growth and transportation land in Guangdong Province showed a hierarchical pattern, while from 2015 to 2020, the pattern became more complex, and regional imbalance intensified. The decoupling results of PRD showed weak decoupling and expanding negative decoupling from 2010 to 2020. The peripheral areas of the Pearl River Delta are characterized by strong negative decoupling and expanding negative decoupling. Research has shown that although Guangdong Province is one of the most developed provinces in China, the mismatch between transportation land and population size in economically underdeveloped areas has become increasingly severe, with changes in the provincial population distribution pattern. The decoupling phenomenon between the transportation land and population is very obvious, and the policy of achieving regional balanced development through transportation infrastructure construction needs to be reviewed.

Does aging affect renewable energy? The role of extreme events and economic development

The world population structure and the global energy system are undergoing profound changes. Research on the relationships between population structure and energy changes is necessary for global sustainable development. This research mainly investigates the impact of aging on renewable energy development by using the data of 212 countries from 2000 to 2021 and further discusses the demand and supply mechanism between aging and renewable energy development. Then the heterogeneity analysis is introduced to seek the role of extreme events within the influence of aging on renewable energy development. The panel results support the positive impact of aging on renewable energy development. Moreover, the mechanism of industrial structure upgrading and consumer demand have been proved. Finally, the impact of aging on renewable energy development is different in the heterogeneity analysis of extreme events. In particular, the extreme events of earthquake and flood weaken the positive impact of aging on renewable energy development. This research shows that aging and coping with climate change are not antithetical, aging can contribute to the development of renewable energy development by inducing demand and changing industrial structure upgrading. The key is an active aging policy.

Simulation-based benchmarking of ancient haplotype inference for detecting population structure

Paleogenomic data has informed us about the movements, growth, and relationships of ancient populations. It has also given us context for medically relevant adaptations that appear in present-day humans due to introgression from other hominids, and it continues to help us characterize the evolutionary history of humans. However, ancient DNA (aDNA) presents several practical challenges as various factors such as deamination, high fragmentation, environmental contamination of aDNA, and low amounts of recoverable endogenous DNA, make aDNA recovery and analysis more difficult than modern DNA. Most studies with aDNA leverage only SNP data, and only a few studies have made inferences on human demographic history based on haplotype data, possibly because haplotype estimation (or phasing) has not yet been systematically evaluated in the context of aDNA. Here, we evaluate how the unique challenges of aDNA can impact phasing and imputation quality, we also present an aDNA simulation pipeline that integrates multiple existing tools, allowing users to specify features of simulated aDNA and the evolutionary history of the simulated populations. We measured phasing error as a function of aDNA quality and demographic history, and found that low phasing error is achievable even for very ancient individuals (∼ 400 generations in the past) as long as contamination and average coverage are adequate. Our results show that population splits or bottleneck events occurring between the reference and phased populations affect phasing quality, with bottlenecks resultingin the highest average error rates. Finally, we found that using estimated haplotypes, even if not completely accurate, is superior to using the simulated genotype data when reconstructing changes in population structure after population splits between present-day and ancient populations. We also find that the imputation of ancient data before phasing can lead to better phasing quality, even in cases where the reference individuals used for imputation are not representative of the ancient individuals.

Simulation-based benchmarking of ancient haplotype inference for detecting population structure

Paleogenomic data has informed us about the movements, growth, and relationships of ancient populations. It has also given us context for medically relevant adaptations that appear in present-day humans due to introgression from other hominids, and it continues to help us characterize the evolutionary history of humans. However, ancient DNA (aDNA) presents several practical challenges as various factors such as deamination, high fragmentation, environmental contamination of aDNA, and low amounts of recoverable endogenous DNA, make aDNA recovery and analysis more difficult than modern DNA. Most studies with aDNA leverage only SNP data, and only a few studies have made inferences on human demographic history based on haplotype data, possibly because haplotype estimation (or phasing) has not yet been systematically evaluated in the context of aDNA. Here, we evaluate how the unique challenges of aDNA can impact phasing and imputation quality, we also present an aDNA simulation pipeline that integrates multiple existing tools, allowing users to specify features of simulated aDNA and the evolutionary history of the simulated populations. We measured phasing error as a function of aDNA quality and demographic history, and found that low phasing error is achievable even for very ancient individuals (∼ 400 generations in the past) as long as contamination and average coverage are adequate. Our results show that population splits or bottleneck events occurring between the reference and phased populations affect phasing quality, with bottlenecks resulting in the highest average error rates. Finally, we found that using estimated haplotypes, even if not completely accurate, is superior to using the simulated genotype data when reconstructing changes in population structure after population splits between present-day and ancient populations. We also find that the imputation of ancient data before phasing can lead to better phasing quality, even in cases where the reference individuals used for imputation are not representative of the ancient individuals.

Water quality in a shallow eutrophic lake is unaffected by extensive thinning of planktivorous and benthivorous fish species

Ambitious to fulfill the European Water Framework Directive obligations, the European governments support projects to rehabilitate lakes with poor water quality. However, most lake restorations having relied on biomanipulation by fish thinning have failed to improve or even maintain water quality. Previous attempts removed all target fish species simultaneously, thus making it impossible to assess the specific impact of each feeding group on water chemistry. Lake Bromme was selected for extensive, time-selective fish biomanipulation to improve water clarity and promote submerged macrophytes and piscivorous fish stocks over a three-year monitoring period. Thinning of adult benthivorous bream (Abramis brama) and tench (Tinca tinca) was conducted throughout year one while thinning in years two and three targeted planktivorous roach (Rutilus rutilus), juvenile bream, and small perch (Perca fluviatilis). Yearly fish surveys assessed changes in fish population structure and biomass. Water quality parameters were monitored continually, and the cover of submerged macrophytes was surveyed annually via sonar. We found no improvement in water clarity or reductions of nutrients, organic particles, chlorophyll concentrations, or watercolor, despite a 6-fold thinning of total estimated fish biomass, from 112 to 19 kg ha−1. Over the period, the macrophyte cover increased from 0.8 to 13.5 %, but no recruitment of large piscivorous fish (perch and pike (Esox lucius) > 10 cm) was detected. We found higher correlations of particle concentration and water clarity to water temperature than to wind speed, which indicates sediment particle resuspension by the remaining fish community (mostly carp Cyprinus carpio) that forage on benthos in shallow lakes. Further system-ecological research in Lake Bromme should evaluate whether thinning the stock of carp and increasing plant cover may improve water quality and test which optical properties sustain high water turbidity and prevent shallow, eutrophic lakes like Lake Bromme from responding to intense fish thinning.

Penerapan Algoritma K-Medoids Dalam Menentukan Cluster Kabupaten/Kota Berdasarkan Migrasi Penduduk Jawa Barat

One of the three main factors influencing population dynamics is migration, along with births and deaths. Changes in population structure will definitely be influenced by migration. If in-migration is more than out-migration, the population will increase, but if out-migration is less than in-migration, the population will decrease. Therefore, it is necessary to know the grouping of regions based on population migration levels. To carry out this grouping, it is necessary to use Data mining methods. In this research, the Data mining used is Clustering using the K-Medoids algorithm. This method divides each district into predetermined groups. The K-Medoids method was chosen because it uses physical data that is not abstract and clear, which is suitable for the problem of grouping population migration data. By grouping migration levels based on districts/cities in West Java, it will be known which districts/cities in West Java have high levels of incoming migration, medium migration and high outmigration. Then recommendations can be given to the local government according to the migration level category.

Global fertility in 204 countries and territories, 1950-2021, with forecasts to 2100: a comprehensive demographic analysis for the Global Burden of Disease Study 2021.

Global fertility in 204 countries and territories, 1950-2021, with forecasts to 2100: a comprehensive demographic analysis for the Global Burden of Disease Study 2021.

Host population crashes disrupt the diversity of associated marine microbiomes.

Host-associated microbial communities are shaped by myriad factors ranging from host conditions, environmental conditions and other microbes. Disentangling the ecological impact of each of these factors can be particularly difficult as many variables are correlated. Here, we leveraged earthquake-induced changes in host population structure to assess the influence of population crashes on marine microbial ecosystems. A large (7.8 magnitude) earthquake in New Zealand in 2016 led to widespread coastal uplift of up to ~6 m, sufficient to locally extirpate some intertidal southern bull kelp populations. These uplifted populations are slowly recovering, but remain at much lower densities than at nearby, less-uplifted sites. By comparing the microbial communities of the hosts from disturbed and relatively undisturbed populations using 16S rRNA gene amplicon sequencing, we observed that disturbed host populations supported higher functional, taxonomic and phylogenetic microbial beta diversity than non-disturbed host populations. Our findings shed light on microbiome ecological assembly processes, particularly highlighting that large-scale disturbances that affect host populations can dramatically influence microbiome structure. We suggest that disturbance-induced changes in host density limit the dispersal opportunities of microbes, with host community connectivity declining with the density of host populations.

Population genetics for insect conservation and control

AbstractInsects are essential not only for ecosystem functioning and food security but also comprise some of the world's most destructive invasive species. Therefore, both insect declines and invasions raise major conservation concerns globally and call for respective conservation or mitigation measures. However, studies of insects are hampered by intrinsic biological features of these organisms, which include extreme population fluctuations, a huge diversity of ecological strategies, and common cryptic species. Population genetics provides a large toolkit to adequately accommodate those features, thereby enabling researchers to inform and monitor the efficacy of conservation and mitigation programs. Here, we provide an overview of the molecular and analytical methods that are relevant to insect conservation or mitigation and highlight the challenges involved in their implementation. We detail how and why temporal changes in genetic diversity, population structure and migration, and the genetic basis of adaptation should be taken into account to inform insect management programs. Finally, we review the barriers to the broad adoption of population genetics in insect research and provide guidelines to facilitate the use of these methods by stakeholders. Overall, this review provides theoretical and practical guidelines for implementing population genetics in both insect conservation and control.

Re-assessment of a blackfoot abalone (Haliotis iris) population in Peraki Bay, New Zealand, after 45 years

ABSTRACT Marine species are facing an increasing number of stressors and some species once thought to be resilient to change are now threatened. It is important to understand how species populations have changed through time so that management can be adjusted accordingly, and so that achievable restoration goals can be set. However, many species lack population data at multidecadal or longer time scales. Using historical data from the 1970s, this study investigates how the dynamics of a New Zealand abalone (Haliotis iris), or pāua, population at Peraki Bay changed over a 45-year period. No commercial fishing of the population occurred prior to the initial survey and limited commercial catch has been reported between surveys. Repeat monitoring of the H. iris population at a 45-year interval indicates that a large change in population size and structure had occurred. Since 1976, there has been an 84% decrease in estimated population size. The remaining population is restricted to where juveniles were found in the original survey. These findings are consistent with conclusions, made from modelling in the 1970s, that the population seen in the 1970s was not stable and that a possible cause was temporal variability in population recruitment.

A palaeogenomic investigation of overharvest implications in an endemic wild reindeer subspecies.

Overharvest can severely reduce the abundance and distribution of a species and thereby impact its genetic diversity and threaten its future viability. Overharvest remains an ongoing issue for Arctic mammals, which due to climate change now also confront one of the fastest changing environments on Earth. The high-arctic Svalbard reindeer (Rangifer tarandus platyrhynchus), endemic to Svalbard, experienced a harvest-induced demographic bottleneck that occurred during the 17-20th centuries. Here, we investigate changes in genetic diversity, population structure, and gene-specific differentiation during and after this overharvesting event. Using whole-genome shotgun sequencing, we generated the first ancient and historical nuclear (n = 11) and mitochondrial (n = 18) genomes from Svalbard reindeer (up to 4000 BP) and integrated these data with a large collection of modern genome sequences (n = 90) to infer temporal changes. We show that hunting resulted in major genetic changes and restructuring in reindeer populations. Near-extirpation followed by pronounced genetic drift has altered the allele frequencies of important genes contributing to diverse biological functions. Median heterozygosity was reduced by 26%, while the mitochondrial genetic diversity was reduced only to a limited extent, likely due to already low pre-harvest diversity and a complex post-harvest recolonization process. Such genomic erosion and genetic isolation of populations due to past anthropogenic disturbance will likely play a major role in metapopulation dynamics (i.e., extirpation, recolonization) under further climate change. Our results from a high-arctic case study therefore emphasize the need to understand the long-term interplay of past, current, and future stressors in wildlife conservation.

Click-click, who’s there? Acoustically derived estimates of sperm whale size distribution off western Ireland

Understanding the structure of populations is a critical element to the establishment of management and conservation measures. Sperm whales Physeter macrocephalus are characterised by a demographic spatial segregation, associated with a conspicuous sexual dimorphism reflected in their vocalisations. These characteristics make acoustic techniques very relevant to the study of sperm whale population structure, especially in remote, challenging environments. The reliability of using inter-pulse intervals of sperm whale clicks to infer body size has long been verified and extensively used. We provide the first size structure estimates of the sperm whale population in an area where assumptions on population structure mainly relied on sparse observations at sea, whaling records and stranding data. Over 10,000 hours of acoustic data collected using both static acoustic recorders and towed hydrophone arrays in Irish offshore waters were processed using a machine learning-based tool aimed at automatically extracting inter-pulse intervals from sperm whale recordings. Our analyses suggested that, unlike previously thought, large males would not account for the majority of the animals recorded in the area. We showed that adult females/juvenile males (length 9-12 m) were predominant, accounting for 49% (n = 788) of the number of individuals recorded (n = 1,595), while the proportions of immature individuals (length<9 m) and adult males (length >12 m) were well balanced, accounting for 25% (n = 394) and 26% (n = 413) of the recorded whales, respectively. Our data also suggested some size segregation may be occurring within the area, with smaller individuals to the south. The implications of such findings are crucial to the management of the population and provide an important baseline to monitor changes in population structure, particularly relevant under changing habitat conditions.

Future Projections of Global Plastic Pollution: Scenario Analyses and Policy Implications

Plastic pollution has attracted the attention of the media, public, and government worldwide. Analysis of the inverted U-shaped environmental Kuznets curve (EKC) relationship between economic development and plastic pollution is crucial because economic growth is a critical driver of plastic pollution. In this study, for the first time, we (i) used the stochastic impacts of regression on population, affluence, and technology (STIRPAT) model to investigate the EKC relationship; (ii) performed a comprehensive analysis of the effects of sociodemographic factors on plastic pollution; and (iii) used a panel dataset of 128 countries for empirical analyses. The STIRPAT model was used to conduct scenario analyses to explore the impacts of sociodemographic driving forces on future plastic pollution by 2050 on a national (217 countries) and global scale. The empirical results confirmed the EKC relationship and revealed that changes in population structure and urbanization could substantially affect plastic pollution. Global plastic pollution was projected to reach 66.1 MT/y by 2050 under the business-as-usual scenario. Low-income countries and sub-Saharan Africa are projected to become major contributors to plastic pollution, leading to a global trend of increasing plastic pollution. These findings will help policymakers identify targets to effectively reduce future global plastic pollution.

Population structure and microscale morphological differentiation in a freshwater snail from the Chilean Altiplano

BackgroundThe diversity and population genetic structure of many species have been shaped by historical and contemporary climatic changes. For the species of the South American Altiplano, the historical climatic changes are mainly related to the wet events of great magnitude and regional influence that occurred during the Pleistocene climatic oscillations (PCOs). In contrast, contemporary climate changes are associated with events of lesser magnitude and local influence related to intensifications of the South American Summer Monsoon (SASM). Although multiple studies have analyzed the effect of PCOs on the genetic patterns of highland aquatic species, little is known about the impact of contemporary climate changes in recent evolutionary history. Therefore, in this study, we investigated the change in population structure and connectivity using nuclear and mitochondrial markers throughout the distribution range of Heleobia ascotanensis, a freshwater Cochliopidae endemic to the Ascotán Saltpan. In addition, using geometric morphometric analyses, we evaluated the concomitance of genetic divergence and morphological differentiation.ResultsThe mitochondrial sequence analysis results revealed the presence of highly divergent co-distributed and geographically nested haplotypes. This pattern reflects an extension in the distribution of groups that previously would have differentiated allopatrically. These changes in distribution would have covered the entire saltpan and would be associated with the large-scale wet events of the PCOs. On the other hand, the microsatellite results defined five spatially isolated populations, separated primarily by geographic barriers. Contemporary gene flow analyses suggest that post-PCO, climatic events that would have connected all populations did not occur. The morphometric analyses results indicate that there is significant morphological differentiation in the populations that are more isolated and that present the greatest genetic divergence.ConclusionsThe contemporary population structure and morphological variation of H. ascotanensis mainly reflect the post-PCO climatic influence. Although both markers exhibit high genetic structuring, the microsatellite and morphology results show the preponderant influence of fragmentation in recent evolutionary history. The contemporary genetic pattern shows that in species that have limited dispersal capabilities, genetic discontinuities can appear rapidly, erasing signs of historical connectivity.

Using whole genome sequencing to characterize Clostridioides difficile isolates at a tertiary center in Melbourne, Australia.

Clostridioides difficile infection (CDI) is the commonest cause of healthcare-associated diarrhea and undergoes standardized surveillance and mandatory reporting in most Australian states and territories. Historically attributed to nosocomial spread, local and international whole genome sequencing (WGS) data suggest varied sources of acquisition. This study describes C. difficile genotypes isolated at a tertiary center in Melbourne, Australia, their likely source of acquisition, and common risk factors. Retrospective observational study. The Royal Melbourne Hospital (RMH), a 570-bed tertiary center in Victoria, Australia. Short-read whole genome sequencing was performed on 75 out of 137 C. difficile isolates obtained from 1/5/2021 to 28/2/2022 and compared to previous data from 8/11/2015 to 1/11/2016. Existing data from infection control surveillance and electronic medical records were used for epidemiological and risk factor analysis. Eighty-five (62.1%) of the 137 cases were defined as healthcare-associated from epidemiological data. On genome sequencing, 33 different multi-locus sequence type (MLST) subtypes were identified, with changes in population structure compared to the 2015-16 period. Risk factors for CDI were present in 130 (94.9%) cases, including 108 (78.8%) on antibiotics, 86 (62.8%) on acid suppression therapy, and 25 (18.2) on chemotherapy. In both study periods, most C. difficile isolates were not closely related, suggesting varied sources of acquisition and that spread of C. difficile within the hospital was unlikely. Current infection control precautions may therefore warrant review. Underlying risk factors for CDI were common and may contribute to the proportion of healthcare-associated infections in the absence of proven hospital transmission.

Pension’s Impact to the Subjective Well-being of Retirees

The aging population is a growing concern of many countries worldwide. The change in population structure has forced governments of these countries to actively deal with this problem. Many countries’ governments are taking measures to the aging population problem, and the pension system is one important way to ensure old people’s welfare by transfer payment from other parties of the society. This paper aims to conclude and discuss the mechanism about how pension affects the subjective well-being of retirees. It is important to fully understand the implications behind pension’s impact for policy makers to make wise decisions. Researchers found that pension mainly contributes to financial security and health situation, which are two important factors affecting subjective well-being of retirees. Financial security is enhanced by increased income, so that retirees can transfer payment to other family member and increase their own consume costs. The positive impact of pension to health situation are only significant for poor population.

Estimation of Premature Deaths due to Exposure to Particulate Matter (PM2.5) Reflecting Population Structure Change in South Korea

Estimation of Premature Deaths due to Exposure to Particulate Matter (PM_2.5) Reflecting Population Structure Change in South Korea

Reexamining the impact of financial development on ecological footprint: The roles of population aging, per capita GDP, and technological innovation

Existing research results on the impact of financial development on ecological footprint are inconsistent or even opposite. In order to better understand the impact of financial development on ecological footprint, this study explores the relationship between financial development and ecological footprint from the perspectives of population aging, GDP per capita, and technological innovation. The results show that when the population aging level is below the threshold, the coefficient of financial development on ecological footprint is 0.285, but when the aging level exceeds the second threshold, the coefficient of financial development on ecological footprint becomes faint negative. Similarly, after per capita GDP crosses the threshold, the correlation coefficient between financial development and ecological footprint turns from positive to faint negative. Compared to this, when the level of technological innovation is below the threshold, the coefficient of financial development and ecological footprint is 0.155, while when the level of technological innovation is above the threshold, the coefficient of financial development and ecological footprint is −0.597. The above results indicates that the impact of financial development on the ecological footprint is affected by other factors. Compared with changes in population structure (aging) and social wealth (GDP per capita), technological innovation has a greater impact on the relationship between financial development and ecological footprint.

EAST MEETS WEST: INNOVATIVE APPROACHES TO GERONTOLOGY EDUCATION AND TRAINING

Abstract The global population is aging at an increasingly fast pace compared to past generations. Although the magnitudes and rates of aging in the United States and Japan differ, the drastic change in population structure has resulted in common challenges for both countries. One challenge is preparing people and society for living a long life while promoting well-being in old age for everyone. Combating ageism, delivering accurate information about aging, and encouraging people to have a balanced view of the aging process are all important topics for living in an aging society. Therefore, gerontology education and training plays a critical role. In this symposium, we will present examples of current efforts and research findings on aging education and training in both the United States and Japan. The first presenter will discuss their efforts on promoting gerontology education through redesigning communities with interdisciplinary collaboration in Japan. The second presenter will explain gerontology curriculum and degree programs in Japan. The third presenter will introduce an international gerontology education course designed for United States graduate students. The last presenter will report findings from a scoping review on intergenerational activities in higher education. Implications for future gerontology education will also be discussed.