Changes In Fungal Communities Research Articles

Shifts in mycorrhizal types of fungi and plants in response to fertilisation, warming and herbivory in a tundra grassland.

Climate warming is severely affecting high-latitude regions. In the Arctic tundra, it may lead to enhanced soil nutrient availability and interact with simultaneous changes in grazing pressure. It is presently unknown how these concurrently occurring global change drivers affect the root-associated fungal communities, particularly mycorrhizal fungi, and whether changes coincide with shifts in plant mycorrhizal types. We investigated changes in root-associated fungal communities and mycorrhizal types of the plant community in a 10-yr factorial experiment with warming, fertilisation and grazing exclusion in a Finnish tundra grassland. The strongest determinant of the root-associated fungal community was fertilisation, which consistently increased potential plant pathogen abundance and had contrasting effects on the different mycorrhizal fungal types, contingent on other treatments. Plant mycorrhizal types went through pronounced shifts, with warming favouring ecto- and ericoid mycorrhiza but not under fertilisation and grazing exclusion. Combination of all treatments resulted in dominance by arbuscular mycorrhizal plants. However, shifts in plant mycorrhizal types vs fungi were mostly but not always aligned in their magnitude and direction. Our results show that our ability to predict shifts in symbiotic and antagonistic fungal communities depend on simultaneous consideration of multiple global change factors that jointly alter plant and fungal communities.

Amplicon-based metagenomics to study the effect of coir age and wood biochar on microbiome in relation to strawberry yield

In the UK, strawberry is mostly grown in coconut coir substrate under protection. Coir substrate is usually used only for one or two cropping seasons because the continuous reuse of coir without any treatment leads to yield decline. In this study, we investigated the changes in bacterial and fungal communities in strawberry roots and bulk coir in relation to (i) the coir substrate age (cropping seasons) and (ii) oak or beech biochar amendment at planting. Coir age did not affect fungal/bacterial alpha (within-sample) diversity but affected beta (between-sample) diversity. Amendment with either oak or beech biochar did not lead to significant changes in either alpha or beta diversity for both fungi and bacteria, but it did alter the relative abundance of 13 fungal ASVs. This study identified six bacterial and 20 fungal ASVs with a significant positive linear relationship with coir age and also eight bacterial and 22 fungal ASVs with a significant negative linear relationship with coir age. Notably, the observed strawberry yield decline in reused coir substrate could be associated with a generalist root pathogen, Ilyonectria destructans (ex. Cylindrocarpon destructans), of which the abundance increased annually by 225% and 426% in strawberry root and bulk coir, respectively. Future research is needed to confirm the role of I. destructans in reused coir on strawberry plant health and fruit productivity and then to identify management strategies for yield decline mitigation.

The Influence of Forest Litter Characteristics on Bacterial and Fungal Community Diversity in the Picea crassifolia Ecosystem on the Qinghai–Tibet Plateau

The biodiversity and activity of microorganisms are crucial for litter decomposition, but how litter traits at different stages of decomposition drive changes in microbial communities has yet to be thoroughly explored. In the typical alpine hilly area of the Qinghai–Tibet Plateau, three types of litter at different decomposition stages were selected under a natural Picea crassifolia (Picea crassifolia Kom.) forest: undecomposed (A-1), partially decomposed (A-2), and fully decomposed (A-3). By measuring physicochemical indicators, microbial diversity, and the composition of the litter at different decomposition stages, this study investigates the community changes and responses of bacteria to litter characteristic changes at different decomposition levels. The results show that with the increase in decomposition level, bacterial diversity increases, community structure changes, and network complexity gradually increases, while the changes in fungal communities are insignificant. Structural equation modeling indicates that the first principal component (PC1) of litter properties is significantly negatively correlated with bacterial diversity and positively correlated with bacterial community composition. There is no significant correlation between fungal diversity and community composition, indicating a closer relationship between bacteria and litter characteristics than fungi. In summary, with an increase in litter decomposition level, the diversity and network complexity of bacterial and fungal communities will significantly increase, which is related to the changes in various litter characteristics. This study provides a scientific basis for the regulatory mechanism of litter decomposition and turnover in the alpine hilly area of the Qinghai–Tibet Plateau, specifically in Picea crassifolia forests.

Disease-induced changes in bacterial and fungal communities from plant below- and aboveground compartments

The plant microbes are an integral part of the host and play fundamental roles in plant growth and health. There is evidence indicating that plants have the ability to attract beneficial microorganisms through their roots in order to defend against pathogens. However, the mechanisms of plant microbial community assembly from below- to aboveground compartments under pathogen infection remain unclear. In this study, we investigated the bacterial and fungal communities in bulk soil, rhizosphere soil, root, stem, and leaf of both healthy and infected (Potato virus Y disease, PVY) plants. The results indicated that bacterial and fungal communities showed different recruitment strategies in plant organs. The number and abundance of shared bacterial ASVs between bulk and rhizosphere soils decreased with ascending migration from below- to aboveground compartments, while the number and abundance of fungal ASVs showed no obvious changes. Field type, plant compartments, and PVY infection all affected the diversity and structures of microbial community, with stronger effects observed in the bacterial community than the fungal community. Furthermore, PVY infection, rhizosphere soil pH, and water content (WC) contributed more to the assembly of the bacterial community than the fungal community. The analysis of microbial networks revealed that the bacterial communities were more sensitive to PVY infection than the fungal communities, as evidenced by the lower network stability of the bacterial community, which was characterized by a higher proportion of positive edges. PVY infection further increased the bacterial network stability and decreased the fungal network stability. These findings advance our understanding of how microbes respond to pathogen infections and provide a rationale and theoretical basis for biocontrol technology in promoting sustainable agriculture.Key points• Different recruitment strategies between plant bacterial and fungal communities.• Bacterial community was more sensitive to PVY infection than fungal community.• pH and WC drove the microbial community assembly under PVY infection.

Deep nutrients and soil fungal communities support tomato fruit yield and quality in dry farm management systems

Changing climates are causing agricultural water shortages at unprecedented scales and magnitudes, especially in regions historically reliant on irrigation. Identifying and understanding systems of farming that allow continuity in agricultural operations in times of water scarcity are increasingly urgent needs. Vegetable dry farming relies on winter rains stored in soils to reduce irrigation to 0–2 events per season and has become prevalent on California’s Central Coast in recent decades. Until now, this system has been unexplored in scientific literature beyond extension publications, despite its promise as a model for low-water agriculture in arid regions. Dry farm management presents a unique challenge given that low water content restricts nutrient access in surface soils, which farmers typically target for fertility management. Managing soil nutrients at depth, as well as microorganisms that help plants access nutrients and alleviate water stress (e.g. arbuscular mycorrhizal fungi, or AMF) could be crucial to dry farm success. We engaged in a collaborative research design process with farmers managing seven commercial dry farm tomato fields to identify and answer three key management questions: 1. What are the depths at which nutrients influence harvest outcomes given low water content in surface soils?, 2. Are commercially available AMF inoculants effective at improving harvest outcomes?, and 3. How does the broader fungal community change in dry farm soils, and are those changes associated with harvest outcomes? Only soil nutrients below 60 cm depth were correlated with tomato yield and fruit quality. We identified a fungal class, Sordariomycetes, as a ‘signature’ fungal group in dry farm soils that distinguished them from irrigated management and correlated with positive fruit quality, while commercial AMF inoculation showed little benefit. These findings can inform management practices that optimize fruit yield and quality, and can guide farmers and policymakers alike in efforts to minimize agricultural water use.

Floristic changes and environmental drivers of soil fungi and archaea in different salt-tolerant plant communities in the intertidal habitat of coastal wetlands.

Microorganisms are crucial elements of terrestrial ecosystems, which play significant roles in improving soil physicochemical properties, providing plant growth nutrients, degrading toxic and harmful chemicals, and biogeochemical cycling. Variations in the types and quantities of root exudates among different plants greatly alter soil physicochemical properties and result in variations in the diversity, structure, and function of soil microorganisms. Not much is understood about the differences of soil fungi and archaea communities for different plant communities in coastal wetlands, and their response mechanisms to environmental changes. In this study, fungal and archaea communities in soils of Suaeda salsa, Phragmites australis, and Spartina alterniflora in the intertidal habitat of coastal wetlands were selected for research. Soil fungi and archaea were analyzed for diversity, community structure, and function using high throughput ITS and 16S rRNA gene sequencing. The study revealed significant differences in fungi and archaea's diversity and community structure in the rhizosphere soil of three plant communities. At the same time, there is no significant difference in the functional groups. SOM, TP, AP, MC, EC and SOM, TN, TP, AP, MC, EC are the primary environmental determinants affecting changes in soil fungal and archaeal communities, respectively. Variations in the diversity, community structure, and ecological functions of fungi and archaea can be used as indicators characterizing the impact of external disturbances on the soil environment, providing a theoretical foundation for the effective utilization of soil microbial resources, thereby achieving the goal of environmental protection and health promotion.

Dynamic changes in fungal communities and functions in different air-curing stages of cigar tobacco leaves.

Air curing (AC) plays a crucial role in cigar tobacco leaf production. The AC environment is relatively mild, contributing to a diverse microbiome. Fungi are important components of the tobacco and environmental microbiota. However, our understanding of the composition and function of fungal communities in AC remains limited. In this study, changes in the chemical constituents and fungal community composition of cigar tobacco leaves during AC were evaluated using flow analysis and high-throughput sequencing. The moisture, water-soluble sugar, starch, total nitrogen, and protein contents of tobacco leaves exhibited decreasing trends, whereas nicotine showed an initial increase, followed by a decline. As determined by high-throughput sequencing, fungal taxa differed among all stages of AC. Functional prediction showed that saprophytic fungi were the most prevalent type during the AC process and that the chemical composition of tobacco leaves is significantly correlated with saprophytic fungi. This study provides a deeper understanding of the dynamic changes in fungal communities during the AC process in cigar tobacco leaves and offers theoretical guidance for the application of microorganisms during the AC process.

Afforestation alters soil microbial community composition and reduces microbial network complexity in a karst region of Southwest China

AbstractSoil microbial community plays important roles in altering ecological processes and biogeochemical cycles in ecosystems. However, little is known about how afforestation influences the diversity, composition, and ecological network of soil microbial community in karst regions. In this study, soil samples were collected from one farmland (FL) and three afforestation lands including one bamboo forest (BA), one landscape tree planting forest (LAT), and one orange orchard (ORO) in a karst region of Southwest China. The bacterial and fungal communities were characterized using the high‐throughput sequencing approach, and soil properties including soil organic carbon, pH, soil water content, and soil total and available nutrient contents were measured under different land use treatments. Results showed that conversion from FL to BA and LAT significantly reduced the Shannon diversity of bacterial community. At the phylum level (top 10), genus level (top 30), and operational taxonomic units (OTUs) level, afforestation from FL resulted in significant changes in nine phyla, 24 genera, and 31.32% OTUs of bacterial community, and in three phyla, 13 genera, and 11.62% OTUs of fungal community. The number of nodes, number of negative edges, connectivity, average degree, and relative modularity of the microbial network under afforestation lands decreased by 9.33%–18.66%, 47.98%–72.75%, 0.45%–5.93%, 14.73%–22.29%, and 6.46%–23.50%, respectively, compared with FL. The soil organic carbon, total potassium and total phosphorus were identified as the key soil properties affecting the microbial community. Compared with LAT and ORO, the changes in bacterial and fungal communities under BA were more obvious because of the higher contents in soil organic carbon (13.48%) and total potassium (27.18%). In conclusion, afforestation significantly changed compositions and ecological network complexity of soil microbial community in karst regions, and conversion from FL to BA had stronger influences on the changes of soil microbial community than other afforestation lands in Southwest China. These findings provide the context necessary to evaluate the responses of soil microbial community to land use changes in karst regions.

Effects of polymerization types on plastics ingestion and biodegradation by Zophobas atratus larvae, and successions of both gut bacterial and fungal microbiomes

Recent studies demonstrated that plastic degradation in Zophobas atratus superworms is related to the gut microbiota. To determine whether the biodegradation and gut-microbiota were influenced by ingested plastic polymerization types, foams of polypropylene (PP), polyurethane (PU) and ethylene vinyl acetate (EVA) were selected as representatives of polyolefins, polyester and copolymers, and the sole feedstock for superworms for 45 d. Both growth and survival rates of superworms were influenced by the type of plastic diet. Although the total consumptions of EVA- and PP-fed groups were similar at 29.03 ± 0.93 and 28.89 ± 1.14 mg/g-larva, which were both significantly higher than that of PU-fed groups (21.63 ± 2.18 mg/g-larva), the final survival rates of the EVA-fed group of 36.67 ± 10.41% exhibited significantly lower than that of the PP- and PU-fed groups of 76.67 ± 2.89% and 75.00 ± 7.07%, respectively, and even the starvation group of 51.67 ± 10.93%. The Illumina MiSeq results revealed similarities in the dominant gut bacterial communities between PU- and EVA-fed groups, with an increase in relative abundance of Lactococcus, but significant differences from the PP-fed groups, which had two predominant genera of unclassified Enterobacteriaceae and Enterococcus. Compared to bran-fed groups, changes in gut fungal communities were similar across all plastics-fed groups, with an increase in the dominant abundance of Rhodotorula. The abundance of Rhodotorula increased in the order of polyolefin, polyester, and copolymer. In summary, plastic ingestion, larval growth, and changes in gut bacterial and fungal community of superworms were all influenced by foam diets of different polymerization types, and especially influences on the gut microbiomes were different from each other.

An Earthworm Peptide Alters Soil Nematode, Microbial, and Nutrient Dynamics: A Novel Mechanism of Soil Food Web Feedbacks

Earthworms are soil macrofauna that control soil ecosystems by strongly influencing soil nematodes, microorganisms, and nutrient cycling, as well as soil environmental factors. We have discovered an earthworm cyclic peptide that disrupts nematode DNA, affecting its lifespan, reproduction, and feeding preferences. To investigate the effects of this peptide on soil, it was added to soil, and changes in soil nematode, bacterial and fungal communities, soil nutrient contents, and basal respiration were measured on days 5 and 21. The results showed that the peptide reduced soil basal respiration on day 5 and soil NO3-N on day 21, decreased soil fungivores nematodes on day 5 and soil nematode abundance on day 21, and increased soil fungal community richness and diversity. It also altered the soil bacterial community structure between day 5 and the soil fungal community structure on days 5 and 21. The peptide regulates the soil environment by influencing the structure of soil bacterial and fungal communities through the soil nematode community, as demonstrated by partial least squares path modelling (PLS-PM) analyses. Earthworm cyclic peptides mediates tri-trophic interactions between earthworms, nematodes, microbes, and environmental factors, providing new insights into soil biota interactions and feedback in dynamic soil food webs.

Changes in rhizosphere soil bacterial, fungal, and protistan communities during tomato (Solanum lycopersicum) growth after reductive soil disinfestation

Changes in rhizosphere soil bacterial, fungal, and protistan communities during tomato (Solanum lycopersicum) growth after reductive soil disinfestation

Dynamic Changes of Soil Microbial Communities During the Afforestation of Pinus Armandii in a Karst Region of Southwest China

Clarifying the response of soil microbial communities to vegetation restoration is essential to comprehend biogeochemical processes and ensure the long-term viability of forest development. To assess the variations in soil microbial communities throughout the growth of Pinus armandii plantations in the karst region, we utilized the “space instead of time” approach and selected four P. armandii stands with ages ranging from 10 to 47 years, along with a grassland control. The microbial community structure was determined by conducting Illumina sequencing of the 16 S rRNA gene and the ITS gene, respectively. The results demonstrated that afforestation with P. armandii significantly influenced soil microbial communities, as indicated by notable differences in bacterial and fungal composition and diversity between the plantations and the control. However, soil microbe diversity did not display significant variation across stand ages. Moreover, the bacterial community exhibited higher responsiveness to age gradients compared to the fungal community. Soil physicochemical factors play a critical role in elucidating microbial diversity and community composition variations during restoration processes. TN, AN, TP, AP, SOC, AK, and pH were the most significant influencing factors for the composition of bacterial community, while TC, SOC, pH, and TCa were the most significant influencing factors for the composition of fungal community. Our findings indicate substantial changes in soil bacterial and fungal communities across successive stages of development. Additionally, the changes in dominant bacteria and fungi characteristics across the age gradient were primarily attributed to variations in the prevailing soil conditions and chemical factors.

Deciphering the biotic and abiotic drivers of coalescence asymmetry between soil and manure microbiomes

Manure application improves soil fertility, yet its implications on the success of invasion of manure-borne microorganisms in the soil are poorly understood. Here, we assessed the importance of abiotic and biotic factors in modulating the extent to which manure-borne fungal and bacterial communities can invade resident soil microbial communities. For this purpose, we applied varying frequencies of two different amounts of manure to nine soils differing in physico-chemical properties, as well as in land-use history, over 180 days and monitored changes in bacterial and fungal communities. Variance partitioning revealed differential contributions of abiotic and biotic factors to invasion success, which together accounted for up to 82 % of the variance explained. We showed that the effects of interactions between biotic and abiotic factors increased with coalescence frequency and manure amount for the bacterial and fungal communities, respectively. Both abiotic and biotic factors were important for modulating coalescence asymmetry for the bacterial community, whereas abiotic factors had a greater effect on the fungal community. These results provide new insights into the drivers of coalescence events between manure and resident soil microbial communities. Moreover, our findings highlight the roles of the mixing ratio and frequency of coalescence events in modulating the survival of manure-borne microorganisms.

Improving apple orchard health: The role of arbuscular mycorrhizal fungi in alleviating replant disease and strengthening soil microbial communities

The occurrence of apple replant disease (ARD) is inevitable during the renewal and transformation of aging orchards. This disease seriously threatens the healthy and sustainable development of the apple industry. Arbuscular mycorrhizal fungi (AMF) have shown great potential in promoting plant growth, resisting soil-pathogen infection and improving soil quality. However, there is relatively little information available about the application of AMF in the prevention and control of ARD. In this study, we conducted a pot and field experiment were conducted with inoculation of AMF (Paraglomus sp. SW1) on apple rootstock (Malus hupehensis Rehd. in the pot experiment and M9T337 in the field experiment) to explore the biocontrol effect of AMF on ARD by comparing the changes in fungal and AMF communities after AMF inoculation on apples under replanting conditions. AMF-inoculated apple was used as the treatment, while non-inoculated apple was used as the control. The results showed that AMF-inoculated plants not only promoted the growth of M. hupehensis Rehd., but also stimulated the branch elongation growth of young apple trees, compared to the control. After inoculation with AMF, the community structure of soil fungi and arbuscular mycorrhizal fungi changed significantly, with an increase in the abundance of fungi and AMF in soil, and a significant reduction in the abundance of Fusarium spp., especially Fusarium moniliforme, Fusarium solani, and Fusarium proliferatum. Additionally, the soil enzyme activity increased significantly. Furthermore, the levels of ammonium nitrogen (NH4+), nitrate nitrogen (NO3−), available phosphorus (AP), available potassium (AK), organic matter (SOM), and pH in the rhizosphere soil were significantly related to the changes in the community structure of fungi and AMF. The AP, NH4+ and NO3− was found to drive the fungal communities, while NH4+ and NO3− drove the AM fungal communities in replanting soil. In conclusion, apple-arbuscular mycorrhizal symbionts can effectively alleviate ARD by promoting plant growth and optimizing the structure of soil microbial communities. Future research, should test other gardening plants following AMF inoculation to prepare for a wider application in controlling replant disease.

Effects of tree species mixing and soil depth on the soil bacterial and fungal communities in Chinese fir (Cunninghamia lanceolata) plantations

Chinese fir [Cunninghamia lanceolata (Lamb.) Hook.] is a critical timber tree species for its fast growth and high yield in southern China and is widely planted in subtropical regions of the country. However, the management of Chinese fir in the form of a monoculture plantation is not conducive to the maintenance of soil fertility and improvements in forest productivity. The establishment of mixed conifer–broad–leaved forests through near-natural transformation is developing into a promising method of forest cultivation for replacing large pure coniferous plantations. Bacteria and fungi are an important part of the soil microbiota and are involved in the soil nutrient cycle. Therefore, this study investigated the response of soil bacterial and fungal communities to the introduction of broad–leaved trees in three types of Chinese fir plantations [Cunninghamia lanceolata monoculture plantation (CMP), C. lanceolata–Castanopsis hystrix Hook. f. & Thomson ex A. DC.–Michelia hedyosperma Law. mixed plantation (CCM), and C. lanceolata–Castanopsis fissa (Champ. ex Benth.) Rehder & E.H.Wilson–Erythrophleum fordii Oliv. mixed plantation (CCE)] located in Guangxi Province, China. And the effect of soil layers (0–20, 20–40, and 40–60 cm soil depths) on the soil microbial communities was further analyzed. The results suggested that tree species mixing significantly affected bacterial and fungal communities, but soil depth only significantly affected bacterial communities (P < 0.01). The relative abundance of Basidiomycetes in CCE (53.91–78.76 %) was significantly higher than that in pure forest (P < 0.05). Bacteria exhibited more complex and multilinked networks in the mixed stands, particularly for the CCE plantation. Mixed planting patterns significantly enhanced bacterial nitrogen fixation and the presence of symbiotic fungi. Redundancy analysis (RDA) and correlation analyses indicated that the microbial community structure was strongly affected by soil environmental factors, with bacteria affected mainly by available phosphorous (AP) and fungi affected mainly by soil enzyme activity and total potassium (TK). In summary, the introduction of broad–leaved species (especially C. fissa and E. fordii) had a significant impact on the soil microbial community, increasing the relative abundance of bacterial nitrogen fixation and symbiotic fungi and generating a complex microbial network. We suggest that changes in AP, TK, and fungal communities should be considered in the near-natural transformation of Chinese fir or soil fertility maintenance and sustainable management to maintain soil fertility.

Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming

Increasing soil organic carbon (SOC) in croplands by switching from conventional to conservation management may be hampered by stimulated microbial decomposition under warming. Here, we test the interactive effects of agricultural management and warming on SOC persistence and underlying microbial mechanisms in a decade-long controlled experiment on a wheat-maize cropping system. Warming increased SOC content and accelerated fungal community temporal turnover under conservation agriculture (no tillage, chopped crop residue), but not under conventional agriculture (annual tillage, crop residue removed). Microbial carbon use efficiency (CUE) and growth increased linearly over time, with stronger positive warming effects after 5 years under conservation agriculture. According to structural equation models, these increases arose from greater carbon inputs from the crops, which indirectly controlled microbial CUE via changes in fungal communities. As a result, fungal necromass increased from 28 to 53%, emerging as the strongest predictor of SOC content. Collectively, our results demonstrate how management and climatic factors can interact to alter microbial community composition, physiology and functions and, in turn, SOC formation and accrual in croplands.

Abiotic legacies mediate plant–soil feedback during early vegetation succession on rare earth element mine tailings

Abstract An increasing number of studies have shown how feedback interactions between plants and soil can influence primary and secondary succession. However, very little is known about the patterns and mechanisms of such plant–soil feedbacks on stressed mine tailings ecosystem, which can be severely contaminated by a range of toxic elements. In a two‐phase plant–soil feedback experiment based on the rare earth element (REE) mine tailing soil, we investigated biotic (changes in bacterial and fungal communities) and abiotic (changes in chemical properties) legacies of three pioneer grass species, and examined feedback effects of three grasses, two legumes and two woody plants with different root traits. Positive plant–soil feedbacks were found in Miscanthus sinensis, Paspalum thunbergii and Tephrosia candida, and neutral feedbacks were observed in the other four plants. These effects corresponded with an increase in nutrients and total organic carbon, as well as a decrease in acidity and extractable aluminium and REEs. There were less signs of biotic changes in the conditioned tailings. The correlation analysis suggested a relationship between plants' responses to soil legacies and root traits, as well as root economics spectrum. On the mine tailings, acquisitive species with higher specific root length appeared to have greater potential for positive feedback. Synthesis and application. Our study shows that early succession on contaminated rare earth element mine tailings may lead to more positive plant–soil feedback than predicted based on results of non‐contaminated soils, mainly due to the alleviation of abiotic stress in tailings. Therefore, the improvement of specific abiotic soil stress and the trait‐based selection of acquisitive plants should be preferentially considered to promote the primary restoration of degraded land.

Diversity and assembly patterns of mangrove rhizosphere mycobiome along the Coast of Gazi Bay and Mida Creek in Kenya.

Fungi are among key actors in the biogeochemical processes occurring in mangrove ecosystems. In this study, we investigated the changes of fungal communities in selected mangrove species by exploring differences in diversity, structure and the degree of ecological rearrangement occurring within the rhizospheres of four mangrove species (Sonneratia alba, Rhizophora mucronata, Ceriops tagal and Avicennia marina) at Gazi Bay and Mida Creek in Kenya. Alpha diversity investigation revealed that there were no significant differences in species diversity between the same mangrove species in the different sites. Rather, significant differences were observed in fungal richness for some of the mangrove species. Chemical parameters of the mangrove sediment significantly correlated with fungal alpha diversity and inversely with richness. The fungal community structure was significantly differentiated by mangrove species, geographical location and chemical parameters. Taxonomic analysis revealed that 96% of the amplicon sequence variants belonged to the Phylum Ascomycota, followed by Basidiomycota (3%). Predictive FUNGuild and co-occurrence network analysis revealed that the fungal communities in Gazi Bay were metabolically more diverse compared to those of Mida Creek. Overall, our results demonstrate that anthropogenic activities influenced fungal richness, community assembly and their potential ecological functions in the mangrove ecosystems investigated.

The Changes, Aggregation Processes, and Driving Factors for Soil Fungal Communities during Tropical Forest Restoration.

Soil fungal communities play crucial roles in mediating the functional associations between above- and belowground components during forest restoration. Forest restoration shapes the alterations in plant and soil environments, which exerts a crucial effect on soil fungal assemblages. However, the changes, assembly processes, and driving factors of soil fungi communities during tropical forest restoration are still uncertain. We used Illumina high-throughput sequencing to identify the changes of soil fungal communities across a tropical secondary forest succession chronosequence (i.e., 12-, 42-, and 53-yr stages) in Xishuangbanna. During forest restoration, the dominant taxa of soil fungi communities shifted from r- to K-strategists. The relative abundance of Ascomycota (r-strategists) decreased by 10.0% and that of Basidiomycota (K-strategists) increased by 4.9% at the 53-yr restoration stage compared with the 12-yr stage. From the 12-yr to 53-yr stage, the operational taxonomic unit (OTU), abundance-based coverage estimator (ACE), Chao1, and Shannon index of fungal communities declined by 14.5-57.4%. Although the stochastic processes were relatively important in determining fungal assemblages at the late stage, the fungal community assembly was dominated by deterministic processes rather than stochastic processes. The shifts in soil properties resulting from tropical forest restoration exerted significant effects on fungal composition and diversity. The positive effects of microbial biomass carbon, readily oxidizable carbon, and soil water content explained 11.5%, 9.6%, and 9.1% of the variations in fungal community composition, respectively. In contrast, microbial biomass carbon (40.0%), readily oxidizable carbon (14.0%), and total nitrogen (13.6%) negatively contributed to the variations in fungal community diversity. Our data suggested that the changes in fungal composition and diversity during tropical forest restoration were primarily mediated by the positive or negative impacts of soil carbon and nitrogen pools.

Bark beetle outbreaks in Picea abies stands are associated with changes in wood-inhabiting fungal communities and seedling establishment on logs

In recent decades bark beetle outbreaks have caused high mortality in natural mountain Picea abies forests in Central Europe. This study evaluated factors affecting seedling establishment of P. abies by focusing on the role of fungal communities in decaying logs, which is an important regeneration microsite. At the control site, which was affected by lower severity disturbance, well decayed logs with moss and vegetation cover hosted many seedlings. At the disturbed site, which experienced high mortality by bark beetles, greater canopy openness suppressed vegetation on logs and lowered seedling density. Additionally, the presence of a white rot basidiomycete Phellopilus nigrolimitatus was positively associated with seedling density. In contrast, the presence of a brown rot basidiomycete Fomitopsis pinicola was negatively associated with seedling density. The relationships between these decomposer fungi and seedling density might be partly attributed to changes in wood chemical properties and associated mycorrhizal and pathogenic fungi.