Abstract The interest in understanding ecosystem functioning has grown in recent years due to the effects of species loss on ecosystem processes. Even though biotic and abiotic factors control ecosystem processes, their relative influence may vary according to ecosystem dynamics. In flood and coastal plains, these dynamics are mainly represented by flood pulses and hydroregime, respectively. The objective of this study was to investigate the importance of abiotic and biotic factors for the ecosystem processes represented by zooplankton secondary production (SP), biomass (ZB), and resource use efficiency (RUE) in lentic waterbodies subjected to different hydrological regimes. We hypothesised that abiotic factors would more strongly determine the ecosystem processes in temporary waterbodies and floodplain lakes, given their greater susceptibility to environmental changes. Biotic factors would be more relevant in coastal lagoons due to their greater temporal stability. Sampling was undertaken quarterly over 1 year in eight coastal lagoons, 10 temporary ponds and five floodplain lakes. The environments were characterised in relation to limnological variables, and zooplankton functional divergence, functional dispersion (FDis), functional evenness, functional richness, and taxonomic richness were measured. Analysis of variance (ANOVA) was used to verify seasonal changes in SP, ZB, RUE, functional diversity, richness, and abiotic factors. Linear mixed models were used to determine which abiotic and biotic factors were the most important for ZB, SP, and RUE. In the coastal lagoons, RUE differed over time. In the temporary ponds and floodplain lakes, no seasonal significant differences were observed for any of the zooplankton production variables. The linear mixed model analyses showed that models composed mainly of biotic factors were better fitted to the production variables. For coastal lagoons, phytoplankton density affected ZB, SP, and RUE increasing them by 9.9 mg DW/m3, 12.4 mg DW/m3, and 1.23, respectively. For temporary ponds, FDis lowered ZB by 6.9 mg DW/m3 and taxonomic richness increased SP and RUE by 14.2 mg DW/m3 and 1.17, respectively. For floodplain lakes, FDis lowered ZB it by 9.9 mg DW/m3 and functional divergence lowered RUE by 0.81. The present study demonstrates that biotic factors are the main determinants of ecosystem processes in neotropical lentic waterbodies, irrespective of their annual hydrological regimes. Complementarity effects and high functional diversity are more important in more stable environments, whereas redundancy and low functional diversity prevail in environments subject to more frequent environmental changes. Biotic factors play a major role in ensuring the functioning of aquatic ecosystems and indicate the important role of biodiversity in enabling ecosystem states to be maintained after disturbances and to prevent changes in ecosystem processes.
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