CF Treatment Research Articles

Short-term organic fertilizer substitution increases sorghum yield by improving soil physicochemical characteristics and regulating microbial community structure

IntroductionChemical fertilizer reduction combined with organic fertilizer (organic fertilizer substitution) has a positive impact on crop productivity and sustainable development. However, the effects of short-term organic fertilizer substitution on microbial community structure and functions of sorghum rhizosphere soil and on sorghum yield remain unclear. Herein, this study investigated the short-term effects of organic fertilizer substitution on sorghum soil physicochemical properties, microbial community structure and enzyme activities using Metagenomic sequencing technology.MethodsThe fertilization treatment included no fertilization (CK), pure chemical fertilizer N (CF), substitution of 25% chemical fertilizer N with organic N (NF25), substitution of 50% chemical fertilizer N with organic N (NF50), substitution of 75% chemical fertilizer N with organic N (NF75), and pure organic fertilizer N (NF100); soil samples were collected and analyzed in the flowering period of sorghum.Results and DiscussionThe results showed that the suitable organic fertilizer substitution rate of sorghum field was 50%, and its yield was the highest among all treatments (9789.9 kg/hm2). Compared with the CF treatment, a medium ratio (50%) of organic fertilizer substitution significantly reduced soil alkalization (by 3.05%), improved soil nutrients, enhanced soil enzyme activities, and increased sorghum yield (P < 0.05). After organic fertilizer substitution treatment, higher protein, fat, and total starch levels accumulated in sorghum grains, and the tannin content of grains decreased. The effect of organic fertilizer substitution on bacterial diversity was greater than that on fungal diversity. Among the dominant bacterial phyla, the medium ratio of organic substitution treatment significantly increased the relative abundances of Proteobacteria (by 3.57%) and Actinomycetes (by 14.94%), and decreased the relative abundances of Acidobacteria (by 5.18%) and Planctomycetes (by 7.76%) compared with no fertilization, while the dominant fungal phyla did not respond significantly to the addition of organic fertilizer. Organic fertilizer substitution also improved soil microbial metabolic pathways, biosynthesis of secondary metabolites, and carbon metabolism. The biomarkers enriched in inorganic fertilizer treatment and organic fertilizer substitution treatments had similar relevant environmental elements but reversed correlation trends. Moreover, soil Alkali-hydrolyzable nitrogen and L-leucine aminopeptidase were important environmental factors influencing the structure of bacterial and fungal communities in sorghum soils, respectively. Soil nutrient levels and microbial communities together explained the variation in annual sorghum yield. The results of this study provide evidence that short-term organic fertilizer substitution increases sorghum yield by improving soil properties and regulating microbial community structure.

Responses of Methane Emission and Bacterial Community to Fertilizer Reduction Plus Organic Materials over the Course of an 85-Day Leaching Experiment

Methane produced from paddy fields has a negative impact on global climate change. However, the role of soil bacterial community composition in mediating methane (CH4) emission from waterlogged paddy soil using the column experiment is poorly known. In the present study, various fertilization treatments were adopted to investigate the effects of fertilizer reduction combined with organic materials (CK: control; CF: conventional fertilization; RF: 20% fertilizer reduction; RFWS: RF plus wheat straw amendment; RFRS: RF plus rapeseed shell amendment; RFAS: RF plus astragalus smicus amendment) on CH4 emission and soil bacterial community during an 85-day leaching experiment. We hypothesized that the fertilizer reduction plus the organic materials could enrich the bacterial communities and increase CH4 emission. The average CH4 flux varied from 0.03 μg m−2 h−1 to 76.19 μg m−2 h−1 among all treatments in the nine sampling times, which may account for the experimental conditions such as air temperature, moisture, and anthropogenic factors. In addition, high-throughput sequencing was utilized to investigate the alteration of the soil bacterial community structure. It was revealed that the diversity and composition of the bacterial community in the topsoil amended with organic materials underwent significant shifts after the 85-day leaching experiment. Proteobacteria was identified as the dominant phylum of the soil bacteria, with an average proportion of 35.2%. For Firmicutes, the proportion of RFRS (11%) was higher than that in the CK (8%), RF (8%), RFWS (7%), RFAS (6%), and CF (5%) treatments. Additionally, Gammaproteobacteria and Alphaproteobateria were supposed to be the major class bacterial communities, with average proportions of 12.8% and 12.2%, respectively. For the RFWS treatment, the contribution of Alphaproteobateria was the highest among all the bacterial relative abundance. According to the correlation heatmap analysis, the top ten bacterial communities were positively related to soil microbial biomass carbon (MBC) and ammonia nitrogen (NH4+-N) (p < 0.01). The findings also indicated that the RFRS treatment was the favorable management to alleviate CH4 emission during an 85-day leaching experiment or possibly in paddy production. Collectively, these results predict that the impacts of different treatments on CH4 production are strongly driven by soil microbial communities and soil properties, with soil bacteria being more prone to the crop residue degradation stage and more sensitive to soil properties. The discoveries presented in this study will be useful for assessing the efficacy and mechanisms of organic material amendments on CH4 emissions in paddy soil.

Towards organic farming in roselle (Hibiscus sabdariffa L.) cultivation- feasibility of changing its nutrition management from chemical to bio-organic

The high dependence on chemical fertilizers in the farming systems especially in the arid regions has become a serious challenge that threatens the stability and sustainability of crop production. Therefore, determining alternative nutrition systems based on the organic and biological sources is a critical issue of crops management. The objective of this study is to assess the response of the roselle (Hibiscus sabdariffa L.) to chemical, organic and biological nutrient systems. A two-year field experiment was conducted with a split-plot based on randomized complete blocks design with three replications. The main plots consisted of control (CL), vermicompost (VP), poultry manure (PM), and chemical fertilizer (NPK) (CF), while the sub-plots involved control (AM0), application of Glomus mosseae (AM1), and Rhizophagus intraradices arbuscular mycorrhiza (AM2). The results showed that PM and CF treatments led to the highest increase in fresh calyx yield (58.6%) compared to the control. While PM treatment showed the highest increase in dry calyx yield (23.9%) and seed yield (32.0%). AM inoculation resulted in a 27.3, 26.8, and 22.3% increase in mentioned traits, respectively compared to the control. PM treatment showed the highest values of dry calyx and seed water productivity (13.5 and 15.5 kg m−3, respectively). Also, AM2 treatment showed the highest values for these indices (13.5 and 14.5 kg m−3, respectively). The highest increase in calyx ascorbic acid (20.1%) was obtained from PM treatment, while the highest value of calyx anthocyanin content (0.307 and 0.292 µmol g−1) in the first and the second year was found in PM and CF treatment, respectively. VC treatment resulted in the highest increase in seed oil content (12.8%), while the highest increase in seed protein content (22.8%) belonged to the CF treatment. The average improvements in the calyx ascorbic acid, calyx anthocyanin content, seed oil content, and seed protein content due to AM inoculation were 11.2, 5.0, 9.2, and 7.8%, respectively. According to our findings, the use of mycorrhiza (especially Rhizophagus intraradices) in combination with poultry manure is recommended to achieve proper economic yields and improve water productivity and quality indices of the roselle in order to replace the chemical fertilizers in the cultivation of this plant in the study area.

Responses of soil fungal and bacterial communities to long-term organic and inorganic nitrogenous fertilizers in an alpine agriculture

Although nitrogen fertilizer is an important measure to increase grain yield, response of soil microbial community to nitrogen fertilizer is still unclear in alpine regions. Based on a long-term (>10 years) nitrogen fertilizer experiment (control, CF: chemical fertilizer, SM: sheep manure; CS: chemical fertilizer + sheep manure) in an alpine agroecosystem of the Lhasa, Xizang, responses of soil bacteria and fungi communities to nitrogen fertilizer was investigated. The CF treatment reduced fungi operational taxonomic unit (OTU) by 13.08 %, phylogenetic diversity by 11.13 % at 10–20 cm, but increased fungi guild number at 0–10 cm by 17.71 %. The SM treatment reduced fungi OTU at 10–20 cm by 11.82 %. Compared to CF and SM treatments, CS treatment had stronger positive effects on bacterial α-diversity, considering that CS treatment but not CF and SM treatments increased bacterial mean nearest taxon distance, species Shannon and Simpson at 10–20 cm. The CF, SM and CS treatments altered fungal community composition at 0–10 and 10–20 cm, bacterial community composition at 10–20 cm, and bacterial species composition at 0–10 cm. The CF and CS treatments altered bacterial phylogenetic composition at 0–10 cm, and the SM and CS treatments altered bacterial functional composition at 0–10 cm. The decreased magnitude of the relative abundance of symbiotroph fungi caused by CS treatment (90.44 %) was stronger than that (65.14 % and 53.62 %) caused by CF and SM treatments at 10–20 cm. Therefore, the SM and CS treatments had stronger effects on soil bacterial functional composition, but the CF treatment had stronger effects on fungal α-diversity. Compared with single application of organic or inorganic nitrogen fertilizer, mixed application of organic and inorganic nitrogen fertilizer was more beneficial to the maintenance and improvement of soil bacterial diversity, but caused more reduction of soil symbiotic fungi and in turn greater potential risk. These scientific findings observed by this study can provide guidance for fertilizer management and soil fertility improvement.

Effects of Long-Term Fertilizer Managements on Soil Organic Carbon Mineralization Under the Double-Cropping Rice System in Southern China

ABSTRACT Soil organic carbon (SOC) plays an important role in maintaining or increasing soil fertility and quality in paddy field, but there is limited information about how SOC mineralization responds to different fertilizer managements under the double-cropping rice system in southern China. Therefore, this study was designed to explore changes in SOC content, soil enzyme activities, SOC mineralization at 0–10 cm and 10–20 cm layers, and its relationship with long-term fertilizer managements in a double-cropping rice system of southern China. The experiment included four fertilizer treatments: chemical fertilizer alone (CF), rice straw and chemical fertilizer (RS+F), 30% organic manure and 70% chemical fertilizer (OM+F), and without fertilizer input as a control (Con). These results showed that SOC and labile organic carbon contents at 0–10 cm and 10–20 cm layers in paddy field with RS+F and OM+F treatments were increased, compared to CF and Con treatments. Compared with Con treatment, SOC mineralization rate and accumulation with CF, RS+F, and OM+F treatments were increased. SOC accumulation and potential mineralization at 0–10 cm and 10–20 cm layers with RS+F and OM+F treatments were increased, compared with CF and Con treatments. SOC mineralization rate and accumulation at 0–10 cm layer with CF, RS+F, OM+F, and Con treatments were higher than that of 10–20 cm layer. These results indicated that soil invertase, cellulose and urease activities in paddy field with RS+F and OM+F treatments were significantly higher than that of CF and Con treatments. There was a significant positive relationship between SOC accumulation and SOC content, soil invertase, cellulose, urease activities but were significant negative correlated with soil pH, bulk density. As a result, these were beneficial practices for improving SOC content and SOC mineralization in a double-cropping rice field of southern China by combined application of rice residue or organic matter with chemical fertilizer managements.

Widespread alterations in systemic immune profile are linked to lung function heterogeneity and airway microbes in cystic fibrosis

BackgroundExcessive inflammation and recurrent airway infections characterize people with cystic fibrosis (pwCF), a disease with highly heterogeneous clinical outcomes. How the overall immune response is affected in pwCF, its relationships with the lung microbiome, and the source of clinical heterogeneity have not been fully elucidated. MethodsPeripheral blood and sputum samples were collected from 28 pwCF and an age-matched control group. Systemic immune cell subsets and surface markers were quantified using multiparameter flow cytometry. Lung microbiome composition was reconstructed using metatranscriptomics on sputum samples, and microbial taxa were correlated to circulating immune cells and surface markers expression. ResultsIn pwCF, we found a specific systemic immune profile characterized by widespread hyperactivation and altered frequencies of several subsets. These included substantial changes in B-cell subsets, enrichment of CD35+/CD49d+ neutrophils, and reduction in dendritic cells. Activation markers and checkpoint molecule expression levels differed from healthy subjects. CTLA-4 expression was increased in Tregs and, together with impaired B-cell subsets, correlated with patients' lung function. Concentrations and frequencies of key immune cells and marker expression correlated with the relative abundance of commensal and pathogenic bacteria in the lungs. ConclusionThe CF-specific immune signature, involving hyperactivation, immune dysregulation with alteration in Treg homeostasis, and impaired B-cell function, is a potential source of lung function heterogeneity. The activity of specific microbes contributes to disrupting the balance of the immune response. Our data provide a unique foundation for identifying novel markers and immunomodulatory targets to develop the future of cystic fibrosis treatment and management.

Mitigating soil degradation in continuous cropping banana fields through long-term organic fertilization: Insights from soil acidification, ammonia oxidation, and microbial communities

Exploring the potential of organic fertilizers as a mitigating strategy against the negative consequences induced by prolonged use of inorganic fertilizers in high-intensity banana cultivation is critically essential. Ammonia-oxidizer are closely linked to soil acidification, and how they respond to the long term fertilized banana field soil still poorly understood. In this study, soil samples from long-term inorganic (CF), and inorganically plus organically fertilized banana fields (OF) (from 2010 to 2019) were used to investigate the soil acid buffer capacity (pHBC), the potential nitrification rate (PNR), and the community structure of bacteria, fungi, ammonia-oxidizing archaea (AOA), and bacteria (AOB). Compared to the natural soil (CK, unplanted, and unfertilized), the pH and pHBC in the long-term fertilized banana field (both CF and OF) were significantly reduced. However, the pHBC was 1.3 times higher in soil receiving OF treatment than that in CF treatment. Organic matter (OM) and total nitrogen (TN) were significantly increased in the OF treated soil, which were 1.88 and 1.6 times higher compared to the CF-treated ones. The PNR in banana soil was 3.71–4.85 times higher than in the natural soil. High-throughput sequencing results showed that Candidatus Nitrosospharea SCA1170-like AOA and Nitrosospira spp-like AOB were adapted to long-term fertilization in banana field soil. Potentially pathogenic bacteria, Xanthomonadaceae, were enriched in CF-treated soil compared to CK and OF soils. Opposingly, potentially beneficial Streptomyces and Arthrobacter were enriched in natural soil. Meanwhile, the OF-treated soil demonstrated a greater abundance of beneficial Bacillus and Alicyclobacillus. The study reveals that organic fertilizers ameliorate soil acidification, low organic matter content and microbial diversity compared to inorganic fertilizers for banana cultivation.

Unraveling the relationship between soil carbon-degrading enzyme activity and carbon fraction under biogas slurry topdressing

Biogas slurry, a by-product of the anaerobic digestion of biomass waste, predominantly consisting of livestock and poultry manure, is widely acclaimed as a sustainable organic fertilizer owing to its abundant reserves of essential nutrients. Its distinctive liquid composition, when tactfully integrated with a drip irrigation system, unveils immense potential, offering unparalleled convenience in application. In this study, we investigated the impact of biogas slurry topdressing as a replacement for chemical fertilizer (BSTR) on soil total organic carbon (TOC) fractions and carbon (C)-degrading enzyme activities across different soil depths (surface, sub-surface, and deep) during the tasseling (VT) and full maturity stage (R6) of maize. BSTR increased the TOC content within each soil layer during both VT and R6 periods, inducing alterations in the content and proportion of individual C component, particularly in the topsoil. Notably, the pure biogas slurry topdressing treatment (100%BS) compared with the pure chemical fertilizer topdressing treatment (CF), exhibited a 38.9% increase in the labile organic carbon of the topsoil during VT, and a 30.3% increase in the recalcitrant organic carbon during R6, facilitating microbial nutrient utilization and post-harvest C storage during the vigorous growth period of maize. Furthermore, BSTR treatment stimulated the activity of oxidative and hydrolytic C-degrading enzymes, with the 100%BS treatment showcasing the most significant enhancements, with its average geometric enzyme activity surpassing that of CF treatment by 27.9% and 27.4%, respectively. This enhancement facilitated ongoing and efficient degradation and transformation of C. Additionally, we screened for C components and C-degrading enzymes that are relatively sensitive to BSTR. The study highlight the advantages of employing pure biogas slurry topdressing, which enhances C component and C-degrading enzyme activity, thereby reducing the risk of soil degradation. This research lays a solid theoretical foundation for the rational recycling of biogas slurry.

Responses of Crop Yield, Soil Fertility, and Heavy Metals to Spent Mushroom Residues Application.

Waste mushroom residues are often returned to fields as organic amendments. Here, we estimated the effects of the continuous applications of different spent mushroom substrates for 2 years on crop yields, soil nutrients, and heavy metals in paddy fields. The study comprised seven treatments: no fertilization (CK) and mineral NPK fertilizer (CF), as well as NPK fertilizer combined with Enoki mushroom residue (EMR50), Oyster mushroom residue (OMR50), Auricularia polytricha mushroom residue (APR50), Shiitake mushroom residue (SMR50), and Agaricus bisporus residue (ABR50). The grain yield was highest under the APR50 treatment. The short-term application of waste mushroom residue significantly increased SOC, TN, TP, and TK content relative to the CK treatment. The SOC, TP, and TK were highest under ABR50. Both total Cr and Cd contents were highest under CF treatment. The highest cumulative ecological risk was observed under OMR50 treatment. In addition, crop yield was positively correlated with SOC, TN, TP, and TP. Our results highlight that further research and innovation are needed to optimize the benefits and overcome the challenges of mushroom residue application.

Evaluating the effectiveness of coagulation–flocculation treatment on a wastewater from the moroccan leather tanning industry : An ecological approach

The removal of pollutants from tannery wastewaters, which is renowned for its substantial volumes, intricate composition, and considerable hazards to human health and the environment, is a prominent research area in the field of water treatment. The aim of this study is to employ a bio-coagulant derived from Parkinsonia aculeata seeds and a bio-flocculant derived from Hibiscus esculentus to minimise the concentration of pollutants in the combined wastewater originating from tanneries. In the course of the research, a thorough physicochemical analysis of the coagulating and flocculating agents, Parkinsonia aculeata (PA) and Hibiscus esculentus (HE), was performed using techniques such as XRD (X-ray diffraction), FTIR (Fourier-transform infrared spectroscopy), and SEM-EDS (scanning electron microscopy-energy dispersive X-ray spectroscopy). This analysis aimed to determine the composition and characteristics of these biomasses. Subsequently, a comprehensive overview was conducted to summarize the various factors that influence the treatment of tannery wastewater through coagulation/flocculation. This was accomplished by manipulating the target factors and observing their impact on the removal of specific physicochemical parameters such as chemical oxygen demand (COD), electrical conductivity (EC), total chromium (Cr) and Optical density (OD). The variables that were established include pH, dosage of coagulant and flocculant, as well as the speed and duration of agitation in both the fast and slow mixing stages. The experiments were carried out while taking into account the optimal parameters, leading to the near-complete removal of all analyzed pollutants. The optimal requirements for the Parkinsonia aculeata-Hibiscus esculentus Coagulation Flocculation System involve adjusting the pH to 8, choosing concentrations of approximately 1.25 g L−1 and 0.6 g L−1 for the coagulant and flocculant respectively, maintaining a fast speed of 170 rpm for 3 min while keeping the slow agitation at around 30 rpm for 20 min. The removal rates achieved after treating tannery wastewater using the PA-HE coagulant-flocculant combination demonstrate high efficacy, with values reaching approximately 100% for TSS, 98.71% for BOD5, 99.93% for COD, 98.88% for NH4+, 98.21% for NO3−, 90.32% for NO2−, 93.13% for SO42−, 95.44% for PO43−, 96.08% for OD and 60% for total chromium. These results indicate the successful removal of a wide range of pollutants from tannery wastewater through the PA-HE treatment method. In predicting the CF treatment approach, PCA has been employed to preprocess the input data and determine the key variables that impact the process. This can streamline the modeling process and enhance the precision of the predictions.

Cystic Fibrosis Modulator Therapies: Bridging Insights from CF to other Membrane Protein Misfolding Diseases

AbstractCystic Fibrosis (CF) is a genetic disorder resulting from mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene, leading to a faulty CFTR protein. Dysfunctional CFTR causes chloride ion imbalance, resulting in dense mucus accumulation in various organs, particularly the lungs. CF treatments focus on symptom management and addressing CFTR′s functional defects. Notably, development of CFTR modulator therapies has significantly advanced CF treatment. These drugs target CFTR protein structural defects induced by mutations, restoring its function and improving CF symptoms. VX‐770, a CFTR potentiator, and CFTR correctors like VX‐809, VX‐661, and VX‐445, have gained FDA approval and widespread clinical use, greatly enhancing the health and survival of many CF patients. However, some CFTR mutations lack effective targeted therapies, leaving approximately 6 % of CF patients without suitable options. CFTR modulator therapies have proven essential for combating the underlying causes of protein misfolding diseases, serving as a blueprint for similar treatments in other membrane protein misfolding diseases. This review explores current and future CFTR modulator therapies, and applications of established paradigms to membrane protein misfolding diseases. Ongoing research and innovation hold the potential for further improvements in CF management and the treatment of protein misfolding diseases.

Enriched soil amendments influenced soil fertility, herbage yield and bioactive principle of medicinal plant (Cassia angustifolia Vahl.) grown in two different soils

High cost of chemical fertilizers and poor nutrient content in conventional organic sources (manure, compost, charcoal etc.) can be addressed through development of enriched organic amendments. However, there is a need to evaluate enriched organic amendments as a potential alternative of chemical fertilizers. Therefore, an effort was made to prepare enriched organic amendments through blending distillation waste of aromatic plant biomass (DWB) with naturally available low-grade rock phosphate (RP) and waste mica (WM). Enrich compost (ENC) was produced from DWB in a natural composting process, blended with mineral powder, whereas biochar fortified mineral (BFM) was prepared by blending biochar, derived from DWB through hydrothermal reaction, with mineral powder. The main aims of the present study were to investigate the impacts of ENC and BFM applications on soil properties, and herbage yield and quality of a medicinal herb Senna (Cassia angustifolia Vahl.). The performances of ENC and BFM at two different rates (2.5 and 5 t ha−1) were compared with the application of conventional farmyard manure (FYM, 5 t ha−1) and chemical fertilizers (CF, NPK 60-40-20 kg ha−1) in two different soils in a pot experiment. Both, ENC and EBC improved soil quality and fertility by increasing soil organic carbon, available nutrients, microbial biomass and enzyme activity. The ENC and BFM increased total herbage yields by 21 and 16.3 % compared to FYM. In both soils, the CF treatment produced the maximum dry herbage yields (32.7–37.4 g pot−1), which however were comparable to ENC (31.9–33.7 g pot−1) and BFM (30.7–35.1 g pot−1) treatments. Bioactive compound (sennoside) production in senna was significantly improved by ENC and BFM compared to CF. The present study indicates that ENC and BFM could not only help to overcome the limitation of conventional FYM, but also have the potentials to substitute costly chemical fertilizers, particularly in medicinal plant cultivation.

Evaluation of the efficiency of nanomicellar formulation of fat-soluble vitamins in patients with cystic fibrosis: the study protocol for a randomized controlled trial

BackgroundCystic fibrosis is an inherited disease, which is caused by the CFTR protein defects due to mutations in the CFTR gene. Along with CFTR dysfunction, exocrine pancreatic insufficiency plays a key role in persistent fat malabsorption in CF patients; therefore, deficiency of fat-soluble vitamins (A, D, E, and K) is still a therapeutic challenge. Even with efficient pancreatic enzyme medication and CF-specific vitamins, many patients with CF have fat-soluble vitamins deficiency. The present study aims to evaluate the efficiency of nanomicelle formulation of fat-soluble vitamins in children with CF in order to achieve the appropriate serum levels of these vitamins.MethodsThis prospective, single-blind control trial will be conducted at the Akbar Children’s Hospital in Mashhad, Iran. Patients with CF will be enrolled based on the eligibility criteria. The control group will receive the standard formulation of fat-soluble vitamins similar to the routine CF treatment, and for the intervention group, the nanomicelle formulation of fat-soluble vitamins will be administered for 3 months. The primary outcome of this study is the measurement of serum levels of fat-soluble vitamins. The secondary outcomes are clinical assessment by the Shwachman-Kulczycki score, anthropometrics, and quality of life. Outcomes will be assessed before and after 3 months.DiscussionDue to persistent fat-soluble vitamin deficiency in CF disease, the nanomicelle formulation could be proposed as a new delivery method of fat-soluble vitamins in the treatment of cystic fibrosis.Trial registrationIranian Registry of Clinical Trials IRCT20220415054541N1. Registered on July 23, 2022.

Long-term biogas slurry application increases microbial necromass but not plant lignin contribution to soil organic carbon in paddy soils as regulated by fungal community

Biogas slurry (BS) is widely considered as a source of organic matter and nutrients for improving soil organic carbon (SOC) sequestration and crop production in agroecosystems. Microbial necromass C (MNC) is considered one of the major precursors of SOC sequestration, which is regulated by soil microbial anabolism and catabolism. However, the microbial mechanisms through which BS application increases SOC accumulation in paddy soils have not yet been elucidated. A 12-year field experiment with four treatments (CK, no fertilizers; CF, chemical fertilizer application; BS1 and BS2, biogas slurry application at two nitrogen rates from BS) was conducted in rice paddy fields. The results showed that long-term BS application had no effect on lignin phenols proportion in SOC relative to CF. In contrast, BS application elevated the MNC contribution to SOC by 15.5–20.5 % compared with the CF treatment. The proportion of fungal necromass C (FNC) to SOC increased by 16.0 % under BS1 and by 25.8 % under BS2 compared with the CF treatment, while no significant difference in bacterial necromass C (BNC) contribution to SOC was observed between the BS and CF treatments. The MNC was more closely correlated with fungal community structures than with bacterial community structures. We further found that fungal genera, Mortierella and Ciliophora, mainly regulated the MNC, FNC and BNC accumulation. Collectively, our results highlighted that fungi play a vital role in SOC storage in paddy soils by regulating MNC formation and accumulation under long-term BS application.

Effects of nitrogen reduction rates on grain yield and nitrogen utilization in a wheat-maize rotation system in yellow cinnamon soil

<abstract> <p>Excessive nitrogen (N) fertilizer application severely degrades soil and contaminates the atmosphere and water. A 2-year field experiment was conducted to investigate the effects of different N fertilizer strategies on wheat-summer corn rotation systems in yellow-brown soil areas. The experiment consisted of seven treatments: no N fertilization (CK), conventional fertilization (FP), optimized fertilization (CF), reduced N rates of 10% (90% FP), 20% (80% FP), 30% (70% FP), and a combination of controlled release with conventional urea at 7:3 ratio (CRU). The results indicate that under the condition of 80% FP, both CF and CRU treatments can increase the yield of wheat and corn for two consecutive years. Compared with FP treatment, the wheat yield of CF and CRU treatments increased by 3.62–2.57% and maize yield by 3.53–1.85% with N fertilizer recovery rate (NRE) of crops by 46.2–37.8%. The agronomic N use efficiency (aNUE) under CF treatment increased by 35.4–37.7%, followed by CRU, which increased by 30.5–33.9%. Moreover, compared with FP treatment, both CF and CRU treatment increased the content of organic matter (OM), total N (TN), and hydrolyzed N (HN) in the topsoil layer, and 70% FP treatment significantly reduced the HN content. Both CF and CRU treatments significantly increased the NO<sub>3</sub> concentrations in the 0–20 cm soil depth during the wheat and maize season at maturity stages and decreased the residual inorganic N below the plow layer (40–60 cm). During the corn season, the CF and CRU treatments significantly reduced the NO<sub>3</sub> concentration in the 40–60 cm soil layer from seedling to jointing. Considering various factors, CRU treatment under 80% FP conditions would be the best fertilization measure for wheat-corn rotation in yellow-brown soil areas.</p> </abstract>

Cyclocodon lancifolius fruit prolongs the lifespan of Caenorhabditis elegans via antioxidation and regulation of purine metabolism.

Cyclocodon lancifolius fruit is a promising commercial fruit with antioxidant activity and is rich in polyphenolic compounds. In this study, the anti-aging activity of C. lancifolius fruit extract (CF) on Caenorhabditis elegans (C. elegans) was evaluated by observing the longevity, stress response, reproduction, oscillation, lipofuscin, and antioxidant enzymes of worms. Moreover, the effects and potential mechanisms of CF on delaying C. elegans senescence at the mRNA and metabolite levels were investigated. The results showed that CF treatment significantly increased the lifespan and stress resistance, decreased the levels of lipofuscin and reactive oxygen species (ROS), and improved the antioxidant system of C. elegans. The extension of the lifespan of C. elegans was remarkably correlated with the upregulation of mtl-1 and Hsp-16.2, along with the downregulation of age-1, daf-2, and akt-1. Metabolomics analysis revealed that purine metabolism is a key regulatory pathway for CF to exert anti-aging effects. The present study suggests that C. lancifolius fruit has potential for use as a functional food to enhance antioxidant capacity and delay aging.

Melatonin reverses oxidative damage in the submandibular gland of rats treated with Cyclophosphamide

Cyclophosphamide (Cf) produces oxidative damage in rat submandibular gland (GSM). In the present work we evaluated the antioxidant protective effect of melatonin (MLT) in GSM of rats treated with Cf. 40 adult male Wistar rats were divided into 5 groups (G): G1: control; G2: Control+Ethanol: treated with 1% ethanol for 10 consecutive days. On days 11 and 12 they received a dose of saline; G3: Cf: treated with 1% ethanol for 12 days, days 11 and 12 they received an intraperitoneal (i.p.) dose of Cf 50 mg/Kg/kg of saline. ) of Cf 50 mg/kg bw; G4: Cf + MLT: MLT (5 mg/kg bw, intraperitoneal, dissolved in 1% ethanol) was administered daily, days 11 and 12 received Cf same as G3; G5: MLT: treated 12 consecutive days with MLT (same dose as G4). After 12 hours of fasting, animals were anesthetized to obtain both submandibular glands, then they were sacrificed. Uric acid (UA), lipid peroxides (LPs), aqueous peroxides (APs) and superoxide dismutase (SOD) activity were measured in submandibular gland homogenate. Statistical analysis: we used ANOVA and Bonferroni test pos hoc, considering significant p<0.05. Cf treatment decreased AU concentration and SOD activity (AU, mg/mg prot., G1: 2.50±0.68; G2: 2.18±0.13; G3: 0.54±0.09* G4: 1.95±0.24#, G5: 2.64±0.47, *p<0.01 G3 vs G1, G2, G4; #p<0.01 G4 vs G3 and G5; SOD, U/mg prot, G1: 4.57±0.95, G2: 4.79±0.94, G3: 2.18±0.53*, G4: 5.13±1.10, G5: 5.09±0.39, *p< 0.01 G3 vs G1, G2, G4 and G5). MLT treatment prevented these effects. In addition, Cf increased PL and PA formation. MLT improved the redox status in GSM of Cf-treated rats. MLT could prevent oxidative processes in GSM produced by Cf.

Pseudomonas fluorescens with Nitrogen-Fixing Function Facilitates Nitrogen Recovery in Reclaimed Coal Mining Soils.

Coal mining has caused significant soil nitrogen loss in mining areas, limiting reclamation and reuse in agriculture. This article studies the effects of organic fertilizer, inorganic fertilizer, and the combined application of Pseudomonas fluorescens with the ability of nitrogen fixation on soil nitrogen accumulation and composition in the reclamation area of the Tunlan Coal Mine from 2016 to 2022 under the conditions of equal nitrogen application, providing a scientific basis for microbial fertilization and the rapid increase in nitrogen content in the reclaimed soil of mining areas. The results showed that as the reclamation time increased, the nitrogen content and the composition and structure of the soil treated with fertilization rapidly evolved toward normal farmland soil. The soil nitrogen content increased most rapidly in the presence of added P. fluorescens + organic fertilizer (MB). Compared to other treatments (inorganic fertilizer (CF), organic fertilizer (M), and P. fluorescens + inorganic fertilizer (CFB)), MB increased total nitrogen (TN) to normal farmland soil levels 1-3 years earlier. The comprehensive scores of MB and CFB on the two principal components increased by 1.58 and 0.79 compared to those of M and CF treatments, respectively. This indicates that the combination of P. fluorescens and organic fertilizer improves soil nitrogen accumulation more effectively than the combination of P. fluorescens and inorganic fertilizer. In addition, the application of P. fluorescens increases the content of unknown nitrogen (UN) in acid-hydrolysable nitrogen (AHN) and decreases the content of amino acid nitrogen (AAN) and ammonia nitrogen (AN). However, there was no significant effect on the content of ammonium nitrogen (NH4+-N) and nitrate nitrogen (NO3--N) in soil-mineralized nitrogen (SMN). When combined with inorganic fertilizer, the contribution of SMN to TN increased by 14.78%, while when combined with organic fertilizer, the contribution of AHN to TN increased by 44.77%. In summary, the use of P. fluorescens is beneficial for nitrogen recovery in the reclaimed soil of coal-mining areas. The optimal fertilization method under the experimental conditions is the combination of P. fluorescens and organic fertilizer.

Computational analysis of long-range allosteric communications in CFTR.

Malfunction of the CFTR protein results in cystic fibrosis, one of the most common hereditary diseases. CFTR functions as an anion channel, the gating of which is controlled by long-range allosteric communications. Allostery also has direct bearings on CF treatment: the most effective CFTR drugs modulate its activity allosterically. Herein, we integrated Gaussian network model, transfer entropy, and anisotropic normal mode-Langevin dynamics and investigated the allosteric communications network of CFTR. The results are in remarkable agreement with experimental observations and mutational analysis and provide extensive novel insight. We identified residues that serve as pivotal allosteric sources and transducers, many of which correspond to disease-causing mutations. We find that in the ATP-free form, dynamic fluctuations of the residues that comprise the ATP-binding sites facilitate the initial binding of the nucleotide. Subsequent binding of ATP then brings to the fore and focuses on dynamic fluctuations that were present in a latent and diffuse form in the absence of ATP. We demonstrate that drugs that potentiate CFTR's conductance do so not by directly acting on the gating residues, but rather by mimicking the allosteric signal sent by the ATP-binding sites. We have also uncovered a previously undiscovered allosteric 'hotspot' located proximal to the docking site of the phosphorylated regulatory (R) domain, thereby establishing a molecular foundation for its phosphorylation-dependent excitatory role. This study unveils the molecular underpinnings of allosteric connectivity within CFTR and highlights a novel allosteric 'hotspot' that could serve as a promising target for the development of novel therapeutic interventions.

Computational analysis of long-range allosteric communications in CFTR

Malfunction of the CFTR protein results in cystic fibrosis, one of the most common hereditary diseases. CFTR functions as an anion channel, the gating of which is controlled by long-range allosteric communications. Allostery also has direct bearings on CF treatment: the most effective CFTR drugs modulate its activity allosterically. Herein, we integrated Gaussian network model, transfer entropy, and anisotropic normal mode-Langevin dynamics and investigated the allosteric communications network of CFTR. The results are in remarkable agreement with experimental observations and mutational analysis and provide extensive novel insight. We identified residues that serve as pivotal allosteric sources and transducers, many of which correspond to disease-causing mutations. We find that in the ATP-free form, dynamic fluctuations of the residues that comprise the ATP-binding sites facilitate the initial binding of the nucleotide. Subsequent binding of ATP then brings to the fore and focuses on dynamic fluctuations that were present in a latent and diffuse form in the absence of ATP. We demonstrate that drugs that potentiate CFTR’s conductance do so not by directly acting on the gating residues, but rather by mimicking the allosteric signal sent by the ATP-binding sites. We have also uncovered a previously undiscovered allosteric ‘hotspot’ located proximal to the docking site of the phosphorylated regulatory (R) domain, thereby establishing a molecular foundation for its phosphorylation-dependent excitatory role. This study unveils the molecular underpinnings of allosteric connectivity within CFTR and highlights a novel allosteric ‘hotspot’ that could serve as a promising target for the development of novel therapeutic interventions.