Central Aromatic Ring Research Articles

Synthesis of a stable crystalline nitrene.

Nitrenes are a highly reactive, yet fundamental, compound class. They possess a monovalent nitrogen atom and usually a short life span, typically in the nanosecond range. Here, we report on the synthesis of a stable nitrene by photolysis of the arylazide MSFluindN3 (1), which gave rise to the quantitative formation of the arylnitrene MSFluindN (2) (MSFluind is dispiro[fluorene-9,3'-(1',1',7',7'-tetramethyl-s-hydrindacen-4'-yl)-5',9''-fluorene]) that remains unchanged for at least 3 days when stored under argon atmosphere at room temperature. The extraordinary life span permitted the full characterization of 2 by single-crystal x-ray crystallography, electron paramagnetic resonance spectroscopy, and superconducting quantum interference device magnetometry, which supported a triplet ground state. Theoretical simulations suggest that in addition to the kinetic stabilization conferred by the bulky MSFluind aryl substituent, electron delocalization across the central aromatic ring contributes to the electron stabilization of 2.

Predisposition in Dynamic Covalent Chemistry: The Role of Non-Covalent Interactions in the Assembly of Tetrahedral Boronate Cages.

Directional bonding strategies guide the design of complex molecular architectures, yet challenges arise due to emergent behavior. Rigid structures face geometric constraints and sensitivity to mismatches, hindering the efficient assembly of molecular organic cages (MOCs). Harnessing intramolecular non-covalent interactions offers a promising solution, broadening geometrical possibilities and enhancing adaptability to boost assembly yields. However, identifying these interactions remains challenging, with their full potential sometimes latent until final assembly. This study explores these challenges by synthesizing boronic acid tripods with varied oxygen positions at the tripodal feet and investigating their role in assembling tetrahedral boronate MOCs. Our results reveal substantial differences in the assembly efficiency among tripods. While the building blocks with oxygen in the benzylic position relative to the central aromatic ring form the MOCs in high yields, those with the oxygen atom directly bound to the central aromatic ring, only yield traces. Through X-ray crystallography and DFT analyses, we elucidate how intramolecular interactions profoundly influence the geometry of the building blocks and cages in a relay-like fashion, highlighting the importance of considering intramolecular interactions in the rational design of (supra)molecular architectures.

Molecular engineering in tunable crystallinity of 2D covalent organic frameworks for efficient photocatalytic hydrogen evolution

The strategy of molecular engineering has been employed to build the structure–property–activity relationship for covalent organic frameworks (COFs) with efficient photocatalytic water splitting for hydrogen production. However, previous reports focus on the impact of molecular design on COFs’ physicochemical properties, the crystallinity differences are usually ignored and related studies remain rare. Herein, we describe the preparation of a series of structurally related COFs with similar chemical compositions but have different numbers of nitrogen (N) atoms in the central aromatic ring via an efficient crystallization strategy using of 2,4,6-triformyl resorcinol (TFR). On one hand, the introduction of N atoms reduces π-π stacking interaction during the formation of framework, leading to a decrease in crystallinity. On the other hand, it contributes to enhancing the photocatalytic performance of the materials by varying the electronic structures. Consequently, our results revealed that the photocatalytic hydrogen evolution (PHE) rate is 61.22 mmol g−1 h−1 for COF-905-1N, significantly higher than COF-905-3N (40.60 mmol g−1 h−1) and COF-905 (26.23 mmol g−1 h−1). This study not only provide fundamental insights into formation mechanism of COFs, but also provide a practical approach to enhance COF-based photocatalytic performance.

Molecular dynamics simulation on asphalt-limestone interfaces considering unconstraint surfaces and individual colloid components

In molecular dynamics (MD) simulation, interactions of asphalt-limestone interfaces are investigated inaccurately because applying of constraint aggregate surfaces simplify some kinetic energies. Utilizing unconstrained aggregate surfaces provides a novel insight to understand the intermolecular effect of displacement of unconstrained particles. The influence of mineral structures containing Mg2+ other than calcite on adhesion are also ignored. This study builds various unconstraint surfaces and individual colloid components to reasonably evaluate adhesion and interaction by calculating energy, diffusion, and distribution of asphalt-limestone interfaces. Simulations reveal that asphalt-limestone interactions intensify with aging and higher temperatures. Polarity, primarily from sulfoxide (SO) and carbonyl (CO) groups after aging, amplifies adhesion by enhancing electrostatic forces. Individual SARA (saturate, aromatic, resin, asphaltene) components exhibit higher interaction energies with limestone, and differences in interaction energies of SARA on limestone surfaces cause separation in asphalt. Ca2+ and Mg2+ mainly combine with CO32- ions via ionic binding, forming stable surfaces unaffected by asphalt. The mineral composition has a limited impact on asphalt-limestone interfaces, although magnesite displaying the highest attraction to asphalt due to greater electronegativity of Mg2+. Inside asphalt molecules, polar CO and SO groups and planar sharps exhibit strong attraction to aromatic rings, increasing intermolecular energies and cohesion. Self-agglomeration and stacking of asphaltenes, driven by π-π conjunctions in central-aromatic rings and reinforced by aging.

Design and synthesis of etrasimod derivatives as potent antibacterial agents against Gram-positive bacteria

The emergence of multidrug-resistant bacteria along with a declining pipeline of clinically useful antibiotics has led to the urgent need for the development of more effective antibacterial agents. Inspired by our recent report on the antibacterial activity of etrasimod, an immunomodulating drug candidate, we prepared a series of etrasimod derivatives by varying substituents on the phenyl ring, altering the central tricyclic aromatic ring, and modifying the carboxyl group. From this series of compounds, indole derivative 24f was identified as the most potent antibacterial compound, with the minimum inhibitory concentration (MIC) values between 2.5 and 10 μM against various Gram-positive bacteria, including methicillin-resistant Staphylococcus aureus (MRSA), S. epidermidis and enterococci. Moreover, 24f exhibited rapid bactericidal activity against S. aureus, low toxicity and hemolytic activity, and a synergistic effect with gentamicin against S. aureus, MRSA, and Enterococcus faecalis. Furthermore, it was shown that neither etrasimod nor 24f affects S. aureus cell membranes. Importantly, 24f did not induce resistance in S. aureus, representing a significant improvement compared to etrasimod. Finally, the antibacterial activity of etrasimod and 24f against S. aureus and MRSA was confirmed in vivo in a Caenorhabditis elegans infection model. Taken together, our study highlights the value of etrasimod and its derivatives as potential antibacterial candidates for combating infections caused by Gram-positive bacteria.

Understanding the effect of morphological change on photocatalytic activity of ZnO nanostructures and reaction mechanism by molecular dynamics

The photocatalytic activity of photocatalysts is often influenced by their particle morphology, dimension, size, exposed facets, porosity, etc. This work aims at gaining insights into the influence of the particle morphology of ZnO nanostructures on their photocatalytic activity. Under hydrothermal conditions, the Zn(NO3)2∙6 H2O:KOH (Zn:KOH) ratio is changed to 1:2, 1:8, and 1:12 to modulate the morphology of ZnO nanostructures. Particularly, the ZnO nanostructures with a nanostar-like morphology, synthesized at the Zn:KOH ratio of 1:8, exhibit the highest photocatalytic activity in comparison to ZnO nanoparticles and nanorods synthesized at the Zn:KOH ratios of 1:2 and 1:12, respectively. The enhanced photocatalytic activity for the degradation of methylene blue (MB) of ZnO nanostructures with a nanostar-like morphology is due to the presence of a large number of oxygen vacancy-related defects, which are preferably formed on the (1 0 1) facet of ZnO. The results from X-ray diffraction and photoluminescence spectroscopy analyses confirm it. Further, molecular dynamics (MD) simulation is involved to explore the interaction of oxygen atoms (as a representative of hydroxyl radical) with methylene blue molecules to understand the mechanism of enhanced MB degradation at the atomic level. The results of the computational study indicate the formation of hydroxyl radicals and the cleavage and the formation of some bonds in the side and central aromatic rings of MB molecules, which ultimately leads to the degradation of MB. Our findings reveal that it is important to control the morphology and facets of nanostructures for achieving high efficiency in the photocatalytic processes to be applied in practical application.

Circumpentacene with Open-Shell Singlet Diradical Character.

Circumacenes (CAs) are a distinctive type of benzenoid polycyclic aromatic hydrocarbons where an acene unit is completely enclosed by a layer of outer fused benzene rings. Despite their unique structures, the synthesis of CAs is challenging, and until recently, the largest CA molecule synthesized was circumanthracene. In this study, we report the successful synthesis of an extended circumpentacene derivative 1, which represents the largest CA molecule synthesized to date. Its structure was confirmed by X-ray crystallographic analysis and its electronic properties were systematically investigated by both experiments and theoretical calculations. It shows a unique open-shell diradical character due to the existence of extended zigzag edges, with a moderate diradical character index (y0 =39.7 %) and a small singlet-triplet energy gap (ΔES-T =-4.47 kcal/mol). It exhibits a dominant local aromatic character with π-electrons delocalized in the individual aromatic sextet rings. It has a small HOMO-LUMO energy gap and displays amphoteric redox behavior. The electronic structures of its dication and dianion can be considered as doubly charged structures in which two coronene units are fused with a central aromatic benzene ring. This study provides a new route toward stable multizigzag-edged graphene-like molecules with open-shell di/polyradical character.

Circumpentacene with Open‐Shell Singlet Diradical Character

AbstractCircumacenes (CAs) are a distinctive type of benzenoid polycyclic aromatic hydrocarbons where an acene unit is completely enclosed by a layer of outer fused benzene rings. Despite their unique structures, the synthesis of CAs is challenging, and until recently, the largest CA molecule synthesized was circumanthracene. In this study, we report the successful synthesis of an extended circumpentacene derivative 1, which represents the largest CA molecule synthesized to date. Its structure was confirmed by X‐ray crystallographic analysis and its electronic properties were systematically investigated by both experiments and theoretical calculations. It shows a unique open‐shell diradical character due to the existence of extended zigzag edges, with a moderate diradical character index (y0=39.7 %) and a small singlet‐triplet energy gap (ΔES‐T=−4.47 kcal/mol). It exhibits a dominant local aromatic character with π‐electrons delocalized in the individual aromatic sextet rings. It has a small HOMO–LUMO energy gap and displays amphoteric redox behavior. The electronic structures of its dication and dianion can be considered as doubly charged structures in which two coronene units are fused with a central aromatic benzene ring. This study provides a new route toward stable multizigzag‐edged graphene‐like molecules with open‐shell di/polyradical character.

Design of thiamine analogues for inhibition of thiamine diphosphate (ThDP)-dependent enzymes: Systematic investigation through Scaffold-Hopping and C2-Functionalisation

Thiamine diphosphate (ThDP), the bioactive form of vitamin B1, is an essential coenzyme needed for processes of cellular metabolism in all organisms. ThDP-dependent enzymes all require ThDP as a coenzyme for catalytic activity, although individual enzymes vary significantly in substrate preferences and biochemical reactions. A popular way to study the role of these enzymes through chemical inhibition is to use thiamine/ThDP analogues, which typically feature a neutral aromatic ring in place of the positively charged thiazolium ring of ThDP. While ThDP analogues have aided work in understanding the structural and mechanistic aspects of the enzyme family, at least two key questions regarding the ligand design strategy remain unresolved: 1) which is the best aromatic ring? and 2) how can we achieve selectivity towards a given ThDP-dependent enzyme? In this work, we synthesise derivatives of these analogues covering all central aromatic rings used in the past decade and make a head-to-head comparison of all the compounds as inhibitors of several ThDP-dependent enzymes. Thus, we establish the relationship between the nature of the central ring and the inhibitory profile of these ThDP-competitive enzyme inhibitors. We also demonstrate that introducing a C2-substituent onto the central ring to explore the unique substrate-binding pocket can further improve both potency and selectivity.

Redefining the Synthetic Logic of Medicinal Chemistry. Photoredox-Catalyzed Reactions as a General Tool for Aliphatic Core Functionalization.

C(sp3)-rich aliphatic motifs in drug molecules are strongly associated with clinical success. Historically, the availability of compound libraries based on C(sp3)-rich cores has been limited due to the challenging direct functionalization of aliphatic rings. Instead, most small molecule drug-like libraries are diversified around central aromatic rings. Herein, we present a general approach to the synthesis of diversified libraries featuring aliphatic core rings via photoredox catalysis under mild conditions.

Reversible Single Electron Redox Steps Convert Polycycles with a C3 P3 Core to a Planar Triphosphinine.

Reaction of the imidazolium-stabilized diphosphete-diide IDP with trityl phosphaalkyne affords a mixture which contains the molecules 1 a and 1 b with a central C3 P3 core, which formally carries a two-fold negative charge. In order to avoid the formation of an antiaromatic 8π electron system within a conjugated dianionic six-membered [C3 P3 ]2- ring, 1 a adopts a bicyclic [3.1.0] and 1 b a tricyclic [2.2.0.0] structure which are in a dynamic equilibrium. 1 a, b can be reversibly oxidized to a triphosphinine dication [5]2+ with a central flat aromatic six-membered C3 P3 ring. This two-electron redox reaction occurs in two single-electron transfer steps via the 7π-radical cation [4]⋅+ , which could also be isolated and fully characterized. The profound reversible structural change observed for the two-electron redox couple [5]2+ /1 a, b is in sharp contrast to the C6 H6 /[C6 H6 ]2- couple, which undergoes only a modest structural deformation.

Microporous Metal-Phosphonates with a Novel Orthogonalized Linker and Complementary Guests: Insights for Trivalent Metal Complexes from Divalent Metal Complexes.

The reliable self-assembly of microporous metal-phosphonate materials remains a longstanding challenge. This stems from, generally, more coordination modes for the functional group allowing more dense structures, and stronger bonding driving less crystalline products. Here, a novel orthogonalized aryl-phosphonate linker, 1,3,5-tris(4'-phosphono-2',6'-dimethylphenyl) benzene (H6 L3) has been used to direct formation of open frameworks. The peripheral aryl rings of H6 L3 are orthogonalized relative to the central aromatic ring giving a tri-cleft conformation of the linker in which small aromatic molecules can readily associate. When coordinated to magnesium ions, a series of porous crystalline metal-organic, and hydrogen-bonded metal-organic frameworks (MOFs, HMOFs) are formed (CALF-41 (Mg), HCALF-42 (Mg), -43 (Mg)). While most metal-organic frameworks are tailored based on choice of metal and linker, here, the network structures are highly dependent on the inclusion and structure of the guest aromatic compounds. Larger guests, and a higher stoichiometry of metal, result in increased solvation of the metal ion, resulting in networks with connectivities increasingly involving hydrogen-bonds rather than direct phosphonate coordination. Upon thermal activation and aromatic template removal, the materials exhibit surface areas ranging from 400-600 m2 /g. Self-assembly in the absence of aromatic guests yields mixtures of phases, frequently co-producing a dense 3-fold interpenetrated structure (1). Interestingly, a series of both more porous (530-900 m2 /g), and more robust solids is formed by complexing with trivalent metal ions (Al, Ga, In) with aromatic guest; however, these are only attainable as microcrystalline powders. The polyprotic nature of phosphonate linkers enables structural analogy to the divalent analogues and these are identified as CALF-41 analogues. Finally, insights to the structural transformations during metal ion desolvation in this family are gained by considering a pair of structurally related Co materials, whose hydrogen-bonded (HCALF-44 (Co)) and desolvated (CALF-44 (Co)) coordination bonded networks were fully structurally characterized.

Toward Near-Infrared Emission in Pt(II)-Cyclometallated Compounds: From Excimers’ Formation to Aggregation-Induced Emission

Two series of Pt(II)-cyclometallated compounds containing N^C^N tridentate and alkynyl-chromophore ligands have been synthesized and structurally characterized. The N^C^N ligands differ on the presence of R1 = H or F in the central aromatic ring, while six different chromophores have been introduced to the alkynyl moiety. Single-crystal X-ray structures for some of the compounds reveal the presence of weak intermolecular contacts responsible for the formation of some dimers or aggregates. The photophysical characterization shows the presence of two emission bands in solution assigned to the 3π-π* transition from the N^C^N ligands mixed with 3MLCT/3ILCT transitions (higher energy band) in deaerated samples. The formation of excimers has also been identified as a broad band at longer wavelengths [near-infrared (NIR) emission] that becomes the main emission band for compounds containing phenanthrene as the chromophore. NIR emission behavior has also been explored using acetonitrile/water mixtures, and the presence of aggregates that emit at ca. 650 nm has also been detected.

(η4-Tetraphenylcyclobutadiene)-(η5-pentaphenylcyclopentadienyl)-cobalt

A one-pot reaction starting with C5Ph5Br, n-BuLi and [CoCl(PPh3)3] followed by the addition of diphenylethyne produces the title compound with 12% yield. Spectroscopic characterization involved 1H, 13C-NMR, UV-Vis and mass spectrometry. A crystal structure determination showed that the central aromatic rings are exactly parallel with the cyclobutadiene ring further apart from the metal as usual. The pentaphenyl–cyclopentadienyl ligand shows an usual paddlewheel orientation, whereas in the tetraphenyl–cyclobutadiene ligand, two of the phenyl groups are nearly coplanar with the four-membered ring. There are also numerous C–H…C(π) interactions between the phenyl groups on the same ring, as well as between rings.

Enhanced Aromaticity and Open-Shell Diradical Character in the Dianions of 9-Fluorenylidene-Substituted Expanded Radialenes.

Radialenes and expanded radialenes are cross-conjugated macrocycles displaying poor aromatic character. In this work, three 9-fluorenylidene substituted expanded [n]radialenes (ER-n, n=3-5) with a diacetylene spacer were synthesized and their structures were confirmed by X-ray crystallographic analysis and NMR spectroscopy. They all can be easily reduced into relatively stable dianions. Detailed experimental measurements and theoretical calculations suggest that their dianions (ER-n2- , n=3-5) are stabilized by both the aromatic fluorenyl anion substituents and the central aromatic rings with formally [4n+2] delocalized π electrons. In addition, the dianions of the extended radialenes (ER-42 - and ER-52 - ) show unique open-shell diradical character with a small singlet-triplet energy gap. For comparison, their linear counterparts (L-3 and L-4) were also synthesized; their dianions exhibit very different redox and optical properties from their respective macrocycles.

Enhanced Aromaticity and Open‐Shell Diradical Character in the Dianions of 9‐Fluorenylidene‐Substituted Expanded Radialenes

Radialenes and expanded radialenes are cross-conjugated macrocycles displaying poor aromatic character. In this work, three 9-fluorenylidene substituted expanded [n]radialenes (ER-n, n=3–5) with a diacetylene spacer were synthesized and their structures were confirmed by X-ray crystallographic analysis and NMR spectroscopy. They all can be easily reduced into relatively stable dianions. Detailed experimental measurements and theoretical calculations suggest that their dianions (ER-n2−, n=3–5) are stabilized by both the aromatic fluorenyl anion substituents and the central aromatic rings with formally [4n+2] delocalized π electrons. In addition, the dianions of the extended radialenes (ER-42− and ER-52−) show unique open-shell diradical character with a small singlet-triplet energy gap. For comparison, their linear counterparts (L-3 and L-4) were also synthesized; their dianions exhibit very different redox and optical properties from their respective macrocycles.

Developing high-quality g-C3N4 film electrode for the photoelectrocatalytic degradation of methylene blue in water

Developing a high-quality photoelectrode for photoelectrochemical applications is still an ongoing challenge. In this study, we prepared the g-C3N4 film on the indium tin oxide (ITO) glass through conventional coating, liquid-based growth, in-situ calcination, and vapor deposition methods, respectively. These electrodes were characterized and used as photoanodes to degrade methylene blue (MB) in water. Among these methods, the in-situ calcination method was most appropriate for preparing the continuous and organized g-C3N4 film electrodes with uniform g-C3N4 coverage and strong adhesion to the ITO substrate. It also had the highest activity in the photocatalytic (PC), electrochemical (EC), and photoelectrocatalytic (PEC) degradation processes of MB. In the PEC reaction, at an applied potential of 1.0 V and a light intensity of 0.96 W/cm2, the removal rate of MB was 62.5%, which was much higher than those in the PC and EC reactions. The high degradation rate was due to the synergistic effect of PEC degradation, wherein the PC and EC reactions promote and optimize each other. In the PC reaction, MB was degraded by −CH3 elimination, while the EC degradation pathway mainly included the conversion of sulfhydryl into sulfoxide and the opening of the central aromatic ring. Both methyl loss and aromatic ring opening occurred in the PEC reaction. Moreover, some monocyclic compounds were formed, and MB showed more complete degradation in the PEC reaction.

Modifications of the Triaminoaryl Metabophore of Flupirtine and Retigabine Aimed at Avoiding Quinone Diimine Formation.

The potassium channel opening drugs flupirtine and retigabine have been withdrawn from the market due to occasional drug-induced liver injury (DILI) and tissue discoloration, respectively. While the mechanism underlying DILI after prolonged flupirtine use is not entirely understood, evidence indicates that both drugs are metabolized in an initial step to reactive ortho- and/or para-azaquinone diimines or ortho- and/or para-quinone diimines, respectively. Aiming to develop safer alternatives for the treatment of pain and epilepsy, we have attempted to separate activity from toxicity by employing a drug design strategy of avoiding the detrimental oxidation of the central aromatic ring by shifting oxidation toward the formation of benign metabolites. In the present investigation, an alternative retrometabolic design strategy was followed. The nitrogen atom, which could be involved in the formation of both ortho- or para-quinone diimines of the lead structures, was shifted away from the central ring, yielding a substitution pattern with nitrogen substituents in the meta position only. Evaluation of KV7.2/3 opening activity of the 11 new specially designed derivatives revealed surprisingly steep structure–activity relationship data with inactive compounds and an activity cliff that led to the identification of an apparent “magic methyl” effect in the case of N-(4-fluorobenzyl)-6-[(4-fluorobenzyl)amino]-2-methoxy-4-methylnicotinamide. This flupirtine analogue showed potent KV7.2/3 opening activity, being six times as active as flupirtine itself, and by design is devoid of the potential for azaquinone diimine formation.

Crystal structure and Hirshfeld surface analysis of 6-((E)-2-{4-[2-(4-chloro-phen-yl)-2-oxoeth-oxy]phen-yl}ethen-yl)-4,5-di-hydro-pyridazin-3(2H)-one.

The pyridazine ring in the title compound, C20H17ClN2O3, adopts a screw-boat conformation. The whole mol-ecule is flattened, the dihedral angles subtended by the least-squares plane of the central aromatic ring with those of the terminal benzene and pyridazine rings being 15.18 (19) and 11.23 (19)°, respectively. In the crystal, the mol-ecules are linked by pairs of N-H⋯O bonds into centrosymmetric dimers and by C-H⋯π contacts into columns. The results of the Hirshfeld surface analysis show that the most prominent inter-actions are H⋯H, accounting for 36.5% of overall crystal packing, and H⋯O/O⋯H (18.6% contribution) contacts.

Synthesis, structures and luminescence properties of N^C^N-coordinated platinum(II) complexes based on an anthracene core: A red shift and a twist

1,8-Bis(2-pyridyl)anthracene HL2 is shown to act as a tridentate, N^C^N-coordinating ligand to platinum(II), undergoing metallation at position 9 of the anthracene. The structures of Pt(N^C^N-L2)Cl and of HL2 have been determined by X-ray diffraction. The complex features two 6-membered chelate rings and an N-Pt-N bite angle of 178.16(7)°, close to the “ideal” value of 180°. The attainment of this angle necessitates not only a twisting of the pyridyl rings relative to the anthracene, but also a remarkable twisting distortion of the anthracene unit itself. The complex is isomeric with the previously reported Pt(d8qb)Cl {d8qb = 1,3-di(8-quinolyl)benzene}. A new derivative of the latter has been prepared, PtL3Cl, featuring methyl substituents in the central benzene ring ortho to the quinolines. Like PtL2Cl, its structure shows twisting of the coordinated heterocycles relative to the plane of the central aromatic ring. The Pt(II) complex PtL1Cl of a related N^C^N-coordinating ligand featuring extended conjugation, benzo[1,2-h: 5,4 = h’]diquinoline HL1, has also been prepared following a previously described procedure. PtL1Cl is brightly phosphorescent in deoxygenated solution at ambient temperature, in the red region of the spectrum. The impressive photoluminescence quantum yield of 0.30 and long emission lifetime of 38 μs are indicative of a rigid structure with little excited state distortion. In contrast, PtL2Cl shows no detectable emission, probably due to the distorted nature of the structure leading to rapid non-radiative decay of the excited state. This result contrasts with the weak red emission displayed by the isomeric Pt(d8qb)Cl and its dimethylated derivative PtL3Cl.