Numerous conglomerate grottoes have been excavated and preserved in the arid and alkaline regions of NW China. After millennia of weathering, these conglomerate grottoes have suffered from various weathering issues (such as seepage and collapse) that are internally governed by the distribution of pore networks and the degree of cementation. However, studies on conglomerate weathering have mostly been reported in humid and tropical climates, where intensive chemical weathering occurs. Additionally, characterizations of pore evolution during conglomerate weathering have been restricted due to limitations in detecting pore size and pore type using a single pore characterization method. To fill this gap, this study jointly used mercury intrusion porosimetry (MIP) and computed tomography (CT) to characterize the pore evolution process during conglomerate weathering at Mogao Grottoes, a world heritage site in NW China. Mineralogical, hydrological, mechanical and microscopic characterization were also conducted to understand the changes in compositions of bulk samples and cements during weathering. Results revealed that the majority of pores in conglomerate are concentrated in macropores > 5 μm, followed by mesopores and micropores. During weathering, volume fraction of macropores significantly increases and that of micropores decreases, with median/average pore diameters experiencing an 8- to 10-fold increase. Permeability, porosity and fractal dimension exhibited strong positive linear correlations with median/average pore diameters. Throughout weathering, the abundances of calcite and clay minerals show notable decrease, particularly in cements, resulting in an enrichment of feldspars. Frequently occurring sand-carrying wind activities and salt weathering in arid regions are inferred to be responsible for the major cement loss and porosity generation through physical processes. Our combined MIP-CT method for pore network characterization is also applicable to other lithologies with a wide range of pore sizes. The proposed mechanism of pore evolution and cementation failure provides a scientific base for protecting stone heritages in arid zones.