The high solar concentration levels result in an intense influx of energy onto the concentrated triple-junction solar cell, leading to elevated temperatures that can degrade the cell’s performance and overall lifespan. This necessitates the development of innovative and efficient cooling strategies to mitigate temperature-induced losses and ensure optimal energy conversion. This study introduces an innovative micro jet impingement cooling system designed for ultrahigh concentrated solar cells, addressing the critical challenge of temperature management under high solar concentration levels. Furthermore, structural modifications were proposed, including reducing ceramic layer thickness to decrease the thermal resistance and using thermal interface materials to improve the cell temperature uniformity. A three-dimensional computational fluid dynamics model was developed to evaluate the proposed system’s performance and compare it with the traditional jet impingement heat sink. The model was verified and validated using empirical data in the literature. In addition, the Response Surface Method was employed to provide a comprehensive understanding of the system’s behavior under various weather conditions and cooling fluid effects. The results showed that concentration ratio and direct normal irradiance significantly affect the system’s performance. Moreover, the new cooling system maintains temperatures below the recommended operating temperature. Finally, the environmental assessment indicated substantial energy payback time reductions at 20,000 Suns, which is significantly lower than at 1000 Suns. The CO2 emissions analysis shows a marked potential for emissions mitigation, particularly at higher CRs and longer sunshine hours. These insights offer a comprehensive overview of ultrahigh concentrated solar cell thermal system performance, highlighting its efficiency and environmental sustainability in solar energy applications.