Cassava Mosaic Disease Severity Research Articles

Gradual Emergence of East African cassava mosaic Cameroon virus in Cassava Farms in Côte d’Ivoire

Cassava mosaic disease (CMD) and cassava brown streak disease (CBSD) are endemic threats to cassava production, causing significant yield losses. They are caused respectively by begomoviruses and ipomoviruses that are transmitted by whiteflies and infected cuttings. This study aimed to monitor and characterize viruses responsible for these diseases in order to fill existing gaps in understanding their epidemiology in Côte d’Ivoire. Field surveys were conducted in 2016, 2017, and 2020, and no CBSD symptoms were observed. However, an increase in CMD incidence was noted from 45.95% in 2016 to 51.37% in 2020, while CMD severity remained moderate over the years with a mean value of 2.29. The number of whiteflies was relatively low and decreased over the years. Molecular diagnostics carried out on cassava leaf samples allowed the detection of East African cassava mosaic Cameroon virus (EACMCMV) that occurs in single as well as in mixed infection with African cassava mosaic virus (ACMV). Single EACMCMV infection, which was detected only in three agroecological zones of eastern Côte d’Ivoire in 2016, spread throughout the country in 2017 and became more widespread in 2020 with a preponderance in central and southern zones, whereas ACMV and EACMCMV coinfection has spread to the entire zones. Phylogenetic analysis of the viral isolates showed that they are closely related to those from Burkina Faso, Ghana, and Nigeria. This changing population of cassava virus species constitutes a serious threat to cassava cultivation. Understanding the evolutionary dynamics of these viruses could help in adopting better disease management strategies to control the disease.

Cassava mosaic disease and abundance of its whitefly vector in north-western Democratic Republic of Congo

Cassava mosaic disease (CMD) is rampant in the Democratic Republic of Congo (DRC). The objective of this study was to assess the significance of CMD and abundance of its whitefly (Bemisia tabaci) vector, in the North-Western provinces of the DRC. A field study was conducted in three provinces, namely Mongala, North Ubangi, and South Ubangi, of north-western DRC, during February to March 2022. One hundred cassava (Manihot esculenta Crantz) fields, aged 3 to 9 months and at intervals of about 10 Km apart, were prospected during an epidemiological survey of cassava mosaic disease. The cassava cropping system (pure culture or intercropped), and the epidemiological parameters of cassava mosaic disease (incidence, severity of CMD, abundance of whiteflies, sources of infection) were assessed. Results showed that the prevalence of CMD and abundance of whitefly vectors in DRC were significantly different among the three provinces. The incidence was low in South-Ubangi (16.49%), medium in Mongala (21.83%), and high in North-Ubangi (44.63%). The severity of the disease in north-western DR Congo is very low and remains below level a value of 3 in all the provinces covered by this study. Whitefly abundance fluctuated between 1.49 (South-Ubangi) to 5.74 (Mongala). Infected cuttings were the main source of CMD infection in all the provinces. Cassava cultivated in monoculture had the highest populations of this victory.

Viruses associated with cassava mosaic disease and their alternative hosts along Nigeria-Cameroon border

Cassava mosaic disease (CMD) threatens cassava production across the African continent. Because CMD is widespread in sub-Saharan Africa (SSA), it is particularly important to monitor border regions to prevent the introduction of other cassava (Manihot esculenta Crantz) viruses and strains into regions otherwise considered still free of the viruses. The objective of this study was to establish the occurrence of viruses associated with CMD and their alternate host plants along the Nigeria-Cameroon border. One hundred leaf samples from cassava plants and weed species were collected across 21 locations, along the border regions of Cross River State; and assessed for CMD incidence and severity. Nucleic acid extracts were obtained and used to test for African cassava mosaic virus (ACMV) and East African cassava mosaic virus (EACMV), using polymerase chain reactions. Plants from ten, seven and four locations had mild, moderate and severe CMD symptoms, respectively. Of the 100 samples collected, 68 were symptomatic and 32 were asymptomatic for CMD; while five weed species were symptomatic. ACMV alone was detected in six symptomatic and three asymptomatic cassava leaves. EACMV was singly detected in one symptomatic and two asymptomatic cassava leaves; while 13 cassava leaves from ten locations had mixed ACMV/EACMV infections. One asymptomatic cassava leaf from Ikang tested positive for ACMV and EACMV. EACMV alone was detected on a symptomatic weed species, Sclerocarpus africanus. The occurrence of viruses causing CMD in Nigeria, including the border regions, has now been further documented, and S. africanus is now verified as a host of EACMV. There is a need for further studies on other plants that may be putative reservoirs for cassava mosaic viruses, towards the development of integrated management strategies.

Distribution of Bemisia tabaci in different agro-ecological regions in Uganda and the threat of vector-borne pandemics into new cassava growing areas

Previous studies in sub-Saharan Africa have showed the spread of cassava mosaic disease (CMD) and cassava brown streak disease (CBSD) pandemics into different cassava growing regions by high Bemisia tabaci populations. Studies did indicate that there were stark differences in some whitefly species, yet they have not looked extensively across agroecologies. Members of B. tabaci species complex termed sub-Saharan Africa 1 (SSA1) and SSA2 have been linked to the spread of CMD and CBSD viruses. During the period of a severe CMD pandemic in the 1990s, SSA2 was the most predominant until the resurgence of SSA1, particularly SSA1-subgroup1 (SSA1-SG1) from the early 2000s to date. Cassava being a drought resilient crop has become an important food security crop and has been introduced into new areas and regions. Considering the role B. tabaci in the spread of cassava virus pandemics into neighboring regions, we investigated the genetic diversity and distribution of B. tabaci in nine different agro-ecological regions of Uganda in 2017. Adult whiteflies were collected from cassava and 33 other host plants from cassava-growing areas, those with limited cassava and areas with no cassava, where it is being introduced as a food security crop. The partial sequences of the mitochondrial cytochrome oxidase 1 (mtCO1) gene (657 bp) were used to determine the phylogenetic relationships between the sampled B. tabaci. Cassava B. tabaci SSA1 (-SG1, -SG2, -Hoslundia (previously called SSA1-SG1/2), -SG3), SSA2 and SSA3; non-cassava B. tabaci SSA6, SSA10, SSA11, SSA12, SSA13, MED-ASL, MED-Q1, MEAM1, Indian Ocean; and other Bemisia species, Bemisia afer and Bemisia Uganda1 were identified in the study. SSA3, one of the key B. tabaci species that occurs on cassava in West Africa, was identified for the first time in Uganda. The SSA1-SG1 was widely distributed, predominated on cassava and was found on 17 other host-plants. The ability of SSA1-SG1 to exist in environments with limited or no cassava growing poses the risk of continued spread of virus pandemics. Therefore, measures must be put in place to prevent the introduction of diseased materials into new areas, since the vectors exist.

Occurrence, Characterization and management of Sri Lankan Cassava Mosaic Virus (SLCMV) in cassava growing Namakkal district of Tamil Nadu, India

Cassava mosaic disease caused by begomoviruses of Geminiviridae family is one of the major constraints for the Cassava production in many Cassava growing states of India. The disease is known to be transmitted by whiteflies Bemisia tabaci and spread though the infected Cassava planting material. In India the Cassava mosaic disease (CMD) is caused by both Indian cassava mosaic virus (ICMV) and Sri Lankan cassava mosaic virus (SLCMV). However, Sri Lankan cassava mosaic virus was the most predominant virus species in the study area. To assess the severity of CMD, a survey was conducted during 2021-2022 in different blocks of the Namakkal district, Tamil Nadu state. The incidence was ranging from 34-95 percent, highest 95 % was recorded in Venandur and lowest 34 % was recorded in Elachipalayam block. The disease prevalence was ranging from 36-85 percent, highest 85 % was recorded in in Paramathi and lowest 36 percent recorded in the Elachipalayam block respectively. Variety Sree Padmanabha was found to be resistant for the Cassava mosaic virus in a trial conducted in a farmers’ field in Venandur block. Growing of CMD resistant varieties and use of disease-free Cassava planting material are the most important and economically feasible practices in the management of the Cassava mosaic Disease.

Epidemiological Assessment of Cassava Mosaic Disease in a Savanna Region of the Democratic Republic of Congo

An epidemiological survey was conducted, from September 2009 to January 2010 in 206 famers’ fields located across 21 cassava-growing localities of Ngandajika territory in Lomami province (central part of Democratic Republic of Congo (DRC), to determine distribution and status of Cassava Mosaic Disease (CMD). Parameters related to the identification and the evaluation of CMD (incidence, severity and gravity) and number of adult whitefly vector were assessed. CMD was present in all localities surveyed and varied according to the localities and varieties. CMD incidence was low at the INERA station (4.33%) but high in Kafumbu (74.55%). Disease severity was low at the INERA station (1.09) but high in Kafumbu (2.67). Gravity was low at the INERA station (2.99%) and elevated in Quartier Congo (67.82%). The mean of adult whitefly populations varied with sites. However, the whiteflies were more abundant in Mpunga (3.65) compared to the INERA station (1.09). Overall, 71 % of varieties showed varying degrees of sensitivity to CMD. The results of this study revealed that the health status of cassava in Ngandajika is alarming and deserves sustained intervention. Adequate and effective control methods must to be in place to reduce the inoculum levels and the speed of CMD propagation and to limit yield losses caused by this disease.

Cassava mosaic disease incidence and severity and whitefly vector distribution in Gabon

Cassava mosaic disease (CMD) is a major constraint to cassava (Manihot esculenta Crantz) production in sub-Saharan Africa. The objective of this study was to gain insights into the epidemiology of CMD in cassava production systems in Gabon. An epidemiological survey was conducted throughout Gabon from October 2020 to May 2021 to evaluate the epidemiology of cassava mosaic disease (CMD) in cassava farms. A phytosanitary diagnosis was conducted at each farm, using the harmonised and unified WAVE protocol to assess the incidence and severity of CMD and the abundance of its whitefly vector. All data collected were recorded using WAVE’s mobile application and uploaded into the WAVE Cube data system. The results showed that CMD was present in all farms surveyed (n = 227; 100%), but with a variable incidence rate. At national level, the incidence of CMD was high, with an average of 64.29%. However, incidence differed among regions with 82.22 and 79.20% for Ogooue-Maritime and Nyanga; respectively, but only 40.42% for Estuaire. Woleu-Ntem had the highest mean severity (3.47) and Ogooue-Maritime the lowest (2.64). Overall, incidence and severity differed significantly among regions (P< 0.05). The average abundance was 2.58 whiteflies per plant (w/p), varying between 1.06 (Nyanga) and 5.25 w/p (Estuaire). The use of infected cuttings was the main mode of CMD spread (62.67%). These results highlight the need to identify the viruses responsible for the observed cases of CMD, to sanitise cultivated plant material, and to implement a CMD control strategy in Gabon.

Cassava mosaic disease and its whitefly vector in Cameroon: Incidence, severity and whitefly numbers from field surveys

Cassava plays a key role in the food security and economy of Cameroon, but its production is constrained by cassava mosaic disease (CMD). However, comprehensive surveys of CMD in Cameroon have been lacking. This study aimed at evaluating the current status of CMD and its whitefly vector. Field surveys were conducted in 2020 using a sampling, diagnostics and data storage protocol that has been harmonized across 10 West and Central African countries for ease of comparison. Thirty plants per field were assessed for CMD severity, whitefly abundance and source of infection. Surveys were conducted in 343 fields and confirmed the presence of CMD in all 10 regions of Cameroon. Among the 10,057 assessed plants, 33.07% were deemed healthy (asymptomatic). At the field level, only 6.7% fields were found to be healthy. The mean CMD incidence across the country was 66.93%, and the mean severity score was 2.28. The main mode of infection was likely through contaminated cuttings. The mean whitefly count per plant was 5.78. This study is the first countrywide survey of CMD in Cameroon and provides insights that can be useful for improving the country's CMD intervention and management strategies.

Cassava mosaic disease (CMD) in Benin: Incidence, severity and its whitefly abundance from field surveys in 2020

Cassava mosaic disease (CMD) is the main threat to cassava (Manihot esculenta Crantz) production in Benin. This study was conducted to assess CMD incidence, disease severity, and adult whitefly (Bemisia tabaci) populations in 11 regions of Benin. A total of 180 cassava fields across the country were assessed during June–December 2020 following the harmonized protocol of the Central and West African Virus Epidemiology program. Based on symptoms observation, CMD was present in all surveyed fields in Ouémé and Alibori regions. The highest disease incidence levels were observed in Malanville (100%), Kpomassè (86.67%), Kandi and Zagnanado (both 81.67%), Ségbanan (80%), and Avrankou (76.67%) districts. The highest mean severity scores were in Couffo (3.68), Mono (3.63), and Atlantique (3.33) regions, while the lowest was in Alibori (2.37). Adult whitefly populations (mean number/plant) were highest in Couffo (15.88) and Mono (13.00) regions and lowest in Donga (0.06). Significant relationships were found between CMD severity and whitefly abundance (P = 0.0010) but there was no significant relationship between whitefly numbers and CMD incidence (P = 0.0577). These findings indicate that CMD has expanded its range across Benin. They also provide a basis for designing a response strategy for the control of cassava virus diseases such as CMD.

The role of pathogen-mediated insect superabundance in the East African emergence of a plant virus.

One of the major crops for food security is cassava. Superabundant Bemisia tabaci whitefly, comprising unusually high landscape populations of the insect, have been implicated in cassava virus emergence. Studies have been unable to select from several hypotheses, however, as to the dynamic drivers of superabundant whitefly associated with the emergence in East Africa of severe cassava mosaic disease. One possibility is that pathogenic modification of infected plants can itself increase the growth of insect vector colonies on infected plants.Through the modelling of population processes at the landscape scale we introduce a framework for analysing patterns in the association of disease and insect waves.Our analyses demonstrate the role of pathogen‐mediated insect superabundance in a plant disease invasion. Synthesis. An elevated abundance of insects at the landscape scale is frequently implicated in invasions of the plant pathogens that they carry. We advance ecological understanding of plant disease invasions by showing how landscape data can be used to investigate the causes of insect vector superabundance.

Selection for resistance to cassava mosaic disease in African cassava germplasm using single nucleotide polymorphism markers

Cassava mosaic disease (CMD) is one of the main constraints that hamper cassava production. Breeding for varieties that are CMD resistant is a major aim in cassava breeding programmes. However, the use of the conventional approach has its limitations, including a lengthy growth cycle and a low multiplication rate of planting materials. To increase breeding efficiency as well as genetic gain of traits, SNP markers can be used to screen and identify resistant genotypes. The objective of this study was to predict the performance of 145 cassava genotypes from open-pollinated crosses for CMD resistance using molecular markers. Two SNP markers (S12_7926132 and S14_4626854), previously converted into Kompetitive allele-specific PCR (KASP) assays, as well as CMD incidence and severity scores, were used for selection. About 76% of the genotypes were revealed to be resistant to CMD based on phenotypic scores, while over 24% of the total population were found to be susceptible. Significant effects were observed for alleles associated with marker S12_7926132 while the other marker had non-significant effects. The predictive accuracy (true positives and true negatives) of the major CMD2 locus on chromosome 12 was 77% in the population used in this study. Our study provides insight into the potential use of marker-assisted selection for CMD resistance in cassava breeding programmes.Significance: With an aim towards reducing the food insecurity rate in Africa, we report on the use of genetic tools for a fast and efficient release of new cassava varieties to benefit breeders, farmers and consumers, given the food and industrial importance of this staple crop. This study adds tremendous knowledge to phenotypic and molecular screening for CMD resistance. The outcome will encourage breeders in various cassava breeding programmes to accelerate genetic gains as well as increase breeding accuracy and efficiency for CMD resistance.

Cassava Brown Streak Disease Response and Association With Agronomic Traits in Elite Nigerian Cassava Cultivars.

Cassava mosaic geminiviruses (CMGs) and cassava brown streak viruses (CBSVs) cause the highest yield losses in cassava production in Africa. In particular, cassava brown streak disease (CBSD) is and continues to be a significant constraint to optimal cassava production in Eastern and Southern Africa. While CBSD has not been reported in West Africa, its recent rapid spread and damage to cassava productivity in Eastern, and Southern Africa is alarming. The aim of this study was to evaluate Nigerian cassava genotypes in order to determine their responses to CBSD, in the event that it invades Nigeria, the world’s largest cassava producer. The study gathered information on whether useful CBSD resistance alleles are present in the elite Nigerian cassava accessions. A total of 1,980 full-sib cassava seedlings from 106 families were assessed in the field at the seedling stage for a year. A subset of 569 clones were selected and assessed for another year at the clonal stage in Namulonge, central Uganda, a known hotspot for CBSD screening. Results indicated that foliar and root incidences and severities varied significantly (p ≤ 0.01, p ≤ 0.001) except for CBSD foliar incidence at 6 months (CBSD6i). Highest and lowest plot-based heritability estimates for CBSD were registered for CBSD root severity (CBSDrs) (0.71) and CBSD6i (0.5). Positive and highly significant correlations were noted between CBSD root incidence (CBSDri) and CBSDrs (r = 0.90***). Significant positive correlations were also noted between CBSD foliar severity at 3 months (CBSD3s) and CBSD foliar incidence at 6 months (CBSD6i) (r = 0.77***), CBSD3s and CBSDrs (r = 0.35***). Fresh root weight (FreshRW) negatively correlated with CBSDri and CBSDrs, respectively (r = −0.21*** and r = −0.22***). Similarly, CBSD3s correlated negatively with cassava mosaic disease severity at 3 (CMD3s) and 6 months (CMD6s), respectively (r = −0.25*** and r = −0.21***). Fifteen clones were selected using a non-weighted summation selection index for further screening. In conclusion, results revealed that the elite Nigerian accessions exhibited significant susceptibility to CBSD within 2 years of evaluation period. It is expected that this information will aid future breeding decisions for the improvement of CBSD resistance among the Nigerian cassava varieties.

Epidemiological assessment of cassava mosaic disease in Burkina Faso.

Surveys were conducted in 2016 and 2017 across the main cassava‐growing regions of Burkina Faso to assess the status of cassava mosaic disease (CMD) and to determine the virus strains causing the disease, using field observation and phylogenetic analysis. CMD incidence varied between regions and across years but was lowest in Hauts‐Bassins (6.0%, 2016 and 5.4%, 2017) and highest in Centre‐Sud (18.5%, 2016) and in Boucle du Mouhoun (51.7%, 2017). The lowest CMD severity was found in Est region (2.0) for both years and the highest in Sud‐Ouest region (3.3, 2016) and Centre‐Sud region (2.8, 2017). The CMD infection was primarily associated with contaminated cuttings in all regions except in Hauts‐Bassins, where whitefly‐borne infection was higher than cuttings‐borne infection in 2016. PCR screening of 687 samples coupled with sequence analysis revealed the presence of African cassava mosaic‐like (ACMV‐like) viruses and East African cassava mosaic‐like (EACMV‐like) viruses as single infections at 79.5% and 1.1%, respectively. Co‐infections of ACMV‐like and EACMV‐like viruses were detected in 19.4% of the tested samples. In addition, 86.7% of the samples positive for EACMV‐like virus were found to be positive for East African cassava mosaic Cameroon virus (EACMCMV). Phylogenetic analysis revealed the segregation of cassava mosaic geminiviruses (CMGs) from Burkina Faso into three clades specific to ACMV, African cassava mosaic Burkina Faso virus (ACMBFV), and EACMCMV, confirming the presence of these viruses. The results of this study show that EACMCMV occurrence may be more prevalent in Burkina Faso than previously thought.

Identifying New Resistance to Cassava Mosaic Disease and Validating Markers for the CMD2 Locus

Cassava (Manihot esculenta Crantz) is a crucial staple crop, and provides carbohydrate energy to more than half a billion people in the tropics. Cassava mosaic disease (CMD) is the most important disease of cassava in Africa. Since Sri Lanka Cassava Mosaic Virus (SLCMV) was first reported in South East Asia in 2015, establishing sustainable solutions to CMD has become a top priority for the cassava program at the International Center for Tropical Agriculture (CIAT) and its partners. In the present study, we screened two populations for CMD resistance: VNM142, 142 clones collected from farms throughout Vietnam, and CIAT102, 102 clones resistant to CMD or mites, which were introduced from CIAT. High broad-sense heritability was observed in all the trials (>0.80). From the population VNM142, eight clones showed high CMD resistance with CMD severity scores less than 2.0. Two resistant clones had the same DNA fingerprinting with the accessions CR63 (PER262 or TAI9) and KM57 (VNM8) in the genebank, respectively. To our knowledge, this is the first report of CMD resistance in the genebank at CIAT. We also used the two populations to validate the CMD markers S12_7926132 and S14_4626854. Both markers explained 51% of the population variance in the segregating population CIAT102, but only 11% in the diverse population VNM142. Thus, we concluded that the two CMD markers could not be used to select for CMD resistance in diverse populations, but could predict the CMD resistance in segregating populations when the susceptible parents do not have resistant marker alleles and the resistance of the CMD2 donors is confirmed.

Marker-assisted selection complements phenotypic screening at seedling stage\xa0to identify cassava mosaic disease-resistant genotypes in African cassava populations

Cassava mosaic disease (CMD) is a serious threat to cassava production in sub-Saharan Africa. The use of genomic-assisted selection at the seedling trial stage would help to reduce the time for release, breeding cost, and resources used, hence increase selection efficiency in cassava breeding programs. Five cassava populations were screened for resistance to CMD during the seedling evaluation trial at 1, 3, and 5 months after planting using a scale of 1–5. The genotypes in the five populations were also screened using six molecular markers linked to the CMD2 gene. The correlation between the phenotypic and marker data was estimated. Based on Cassava Mosaic Disease Severity Score (CMDSS), between 53 and 82% of the progenies were resistant across the populations with an average of 70.5%. About 70% of the progenies were identified to be resistant to the disease across the populations with a range of 62–80% using the marker data. With both marker data and CMDSS combined, 40–60% of the progenies in each population, with an average of 52%, were identified to be resistant to CMD. There was a fairly significant correlation between the marker data and CMDSS in each cassava population with correlation coefficients ranging from 0.2024 to 0.3460 suggesting that novel genes not associated to the markers used might be involved in the resistance to CMD. The resistant genotypes identified in this study with potential for other desirable traits were selected for evaluation at the advanced trial stage thereby shortening the period required for the breeding program.

Kasule, F Farmer Preference of Cassava Cultivars in Eastern Uganda: A Choice Beyond Disease Resistance

The cassava breeding program in Uganda has released many improved cultivars resistant/tolerant to cassava brown streak disease (CBSD) and cassava mosaic disease (CMD). However, many farmers have continued to use cultivars that are susceptible to these major viral diseases but with diverse attributes. There is a need to understand farmers’ cassava cultivar attribute preferences and CBSD, CMD prevalence on the preferred cultivars. A total of 150 cassava farmer fields (74 in Bukedea district and 76 in Kumi district) located in eastern Uganda were evaluated for farmers’ cultivars and attribute preferences, as well as prevalence of CBSD and CMD on the farmer selected cultivars. The eastern region was of interest in the study, due to it-being the major cassava producing area in the country. In addition, 30 cassava plants of different genotypes were chosen randomly along transects of each field and assessed for CBSD/CMD incidence and severity on preferred cultivars. Results showed that more than 64% of the farmers in eastern Uganda preferred NASE 03 due to its sweet taste and high yields, followed by NASE 14 (21%) because of its high yields. There was a significant (P≤0.001) correlation between cassava cultivars preferred and CBSD severity (r = -0.56), CBSD incidence (r = -0.53), CMD severity (r = -0.51) and CMD incidence (r = -0.39). In corroboration, the most preferred cultivar, NASE 03 was found most susceptible to CBSD and CMD in both Bukedea and Kumi districts with CBSD incidence of 62.2% and 52.7% and CMD incidence of 56.9% and 34.3% respectively. The results showed that CBSD and CMD are prevalent on farmer preferred cassava cultivars, and that farmer cultivar preference depends not only on disease resistance but also other attributes.

Evaluation of Cassava Genotypes for Agronomic Performance, Correlation with CMD and CBSD Parameters and Stability across Alupe, Kakamega and Kibos in Western Kenya

Cassava (Manihot esculenta Crantz) production in sub-Saharan Africa (SSA) is constrained by the two biotic constraints namely, cassava mosaic disease (CMD) and cassava brown streak disease (CBSD). The aim of this study was to evaluate elite cassava genotypes for variation in agronomical traits, correlate them to CMD and CBSD parameters and identify stable genotypes in Alupe, Kakamega and Kibos in Western Kenya. Twenty three (23) elite cassava genotypes that had shown resistance to either one or both of CMD and CBSD in Eastern Africa were evaluated. The trial was conducted using an alpha lattice balanced design with twenty three (23) genotypes, replicated three times at Alupe, Kakamega and Kibos in Western Kenya for an extended cropping cycle between 2016 and 2017. Results showed significant differences (P ≤ 0.05) between genotypes and location (or agro-ecology), but not interaction (P ≥ 0.05), for all the agronomic performance parameters evaluated. All the 23 cassava genotypes evaluated across the three locations had mean cyanide potential levels ranging from of 3.00–6.00 and were therefore, sweet and not bitter. The significant but negative relationship between CMD and CBSD incidence and severity with agronomic performance implied that their relationship was inverse. Confirmation of stability for agronomic performance was achieved through AMMI analysis, using AMMI stability value (ASV). Stable genotypes based on AMMI stability values (ASV) for fresh root yield across Alupe, Kakamega and Kibos were KBH/2002/066, Kibandameno (a local standard check), NASE-18, Kizimbani and NASE-3. These genotypes need to be further evaluated in more environments to assess their wider adaptability and stability.

Genetic Variation and Trait Correlations in an East African Cassava Breeding Population for Genomic Selection.

Cassava (Manihot esculenta Crantz) is a major source of dietary carbohydrates for >700 million people globally. However, its long breeding cycle has slowed the rate of genetic gain for target traits. This study aimed to asses genetic variation, the level of inbreeding, and trait correlations in genomic selection breeding cycles. We used phenotypic and genotypic data from the National Crops Resources Research Institute (NaCRRI) foundation population (Cycle 0, C0) and the progeny (Cycle 1, C1) derived from crosses of 100 selected C0 clones as progenitors, both to evaluate and optimize genomic selection. The highest broad-sense heritability (H2 = 0.95) and narrow-sense heritability (h2 = 0.81) were recorded for cassava mosaic disease severity and the lowest for root weight per plot (H2 = 0.06 and h2 = 0.00). We observed the highest genetic correlation (rg= 0.80) between cassava brown streak disease root incidence measured at seedling and clonal stages of evaluation, suggesting the usefulness of seedling data in predicting clonal performance for cassava brown streak root necrosis. Similarly, high genetic correlations were observed between cassava brown streak disease severity (rg= 0.83) scored at 3 and 6 mo after planting (MAP) and cassava mosaic disease, scored at 3 and 6 MAP (rg= 0.95), indicating that data obtained on these two diseases at 6 MAP would suffice. Population differentiation between C0 and C1 was not well defined, implying that the 100 selected progenitors of C1 captured the diversity in the C0. Overall, genetic gain for most traits were observed from C0 to C1.

Incidence and severity of cassava mosaic disease in farmer’s fields in Ghana

A survey of cassava mosaic disease (CMD) was carried out in Ghana from 2007-2008 to assess CMD incidence, infection type, severity and adult whitefly population. A total of 136 farmers’ fields across major cassava producing areas in the Brong Ahafo, Western, Northern, Ashanti and Volta regions were assessed. CMD was prevalent in most of the 136 fields surveyed. Frequently encountered local landraces were susceptible to the disease. CMD incidence reached 100% in farmers’ fields. Mean disease incidence ranged from 46% in the Ashanti region to 90% in the Western region of the country. CMD incidence averaged 66.0%, with cutting-borne infection and Whitefly-borne infections being 54.0% and 12.0%, respectively. CMD shoot symptom severity ranged from 2.0 to 3.7 in the farmers’ fields, with a mean of 2.9. Mean adult whitefly population was 0.47. The high prevalence of CMD requires a concerted effort in the management of CMD in the country.

AMMI analysis of cassava response to contrasting environments: case study of genotype by environment effect on pests and diseases, root yield, and carotenoids content in Cameroon

Genotype by environment interaction remains a substantial issue in all breeding programs. Crop genotypes are generally developed in a central breeding location, but always require the evaluation of breeding products in different environments. This is particularly relevant in countries that have a wide range of climates. Eighteen cassava genotypes were evaluated in Cameroon in eight environments—varying in seasonal rainfall and temperature patterns and soil characteristics—over two cropping seasons. Soil nutrient content was analyzed and trials were established in a randomized complete block design in three replications. Response of genotypes to major cassava pests and diseases, yield and carotenoids content was evaluated. It was observed that four genotypes did not show cassava mosaic disease (CMD) symptoms irrespective of the environments. The local check had highest CMD incidence and severity across all environments. Average number of whitefly per plant across all environments was highest on TMS 96/0023. Average cassava green mite (CGM) infestation was low on all the genotypes. Fresh root yield of five genotypes ranged between 25 and 30 tons per ha for both years. Significant and positive correlation was found across locations between fresh root yield and soil K, P and Mg. AMMI analysis revealed highly significant differences among genotypes and environments and significant genotype × environment interaction for most of the estimated traits, indicating variability in genotypes performance with environment.