Biomechanical strain is a major stimulus of subchondral bone (SCB) tissue adaptation in joints but may also lead to initiation and propagation of microcracks, highlighting the importance of quantifying the intratissue strain in subchondral bone. In the present study, we used micro computed tomography (μCT) imaging, mechanical testing, and digital image correlation (DIC) techniques to evaluate the biomechanical strains in equine SCB under impact compression applied through the articular surface. We aimed to investigate the effects of in vivo accumulated microdamage in equine SCB on the distribution of mechanical impact strain through the articular cartilage. Under the applied strain of 2.0 ± 0.1% (mean ± standard deviation, n=15) to the articular surface of cartilage-bone plugs, the overall thickness of the SCB developed eSCBOverall = 0.7 ± 0.2% in all specimens. Contours of high strains in specimens without microdamage (NDmg) aligned parallel to the cartilage-bone interface with peak tensile, ϵt, and compressive, ϵc, strains of 0.5 ± 0.3% and 1.2 ± 0.4%, respectively at the time of peak compression (n=7). In damaged specimens (Dmg), contours of high strains aligned with the cracks in the imaged plane with peak strains of ϵt= 1.2 ± 0.8% and ϵc= 3.5 ± 2.2%, respectively (n=7). Microdamage was the main predictor of the normalised compressive and tensile strains across the SCB thickness. Results of multivariable analyses revealed presence of microdamage, distance from the articular surface and TMD were the main predictors of normalised compressive and tensile strain. Strain was greater in the superficial bone, particularly for specimens with microdamage. In vivo fatigue-induced microdamage is an important predictor of local subchondral bone strains.