Under the dual pressures of rapid urbanization and intensifying global climate change, China has proposed governance policies aimed at promoting ecological urban construction. Wetland landscapes play a key role in sustaining human and social well-being. As a significant city in the middle reaches of the Yangtze River, Wuhan’s wetland resources play an irreplaceable role in maintaining the regional ecological balance and promoting sustainable economic and social development. However, urbanization poses a severe challenge to the ecological service functions of wetlands. Consequently, in this study, we analyzed the spatial–temporal evolution patterns of the sub-functional systems of carbon sequestration, biodiversity conservation, water yield, and water purification in five wetland types in Wuhan City from 2000 to 2020 by using the CASA model and InVEST model. Then, a wetland multi-functional assessment framework was constructed to quantify the comprehensive multi-function score. It is imperative to unravel the underlying mechanisms driving the changes in wetland functions and to explore the equilibrium point between wetland conservation and urban sustainable development. Our results show that the wetland area of Wuhan City decreased from 5077.33 km2 in 2000 to 4696.60 km2 in 2020, and the wetland multi-functions exhibited significant spatial heterogeneity from 2000 to 2020. Wetland carbon sequestration increased from 0.94 Tg in 2000 to 1.11 Tg in 2020. The wetland habitat quality declined from 0.13 in 2000 to 0.11 in 2020. The water production of the wetlands increased from 5.43 × 109 t in 2000 to 22.59 × 109 t in 2020. The wetland N loss decreased from 55,850.58 t in 2000 to 49,209.93 t in 2020. The highest multi-function score was in paddy fields, which increased from 0.41 ± 0.12 to 0.51 ± 0.12, followed by tidal flats, which increased from 0.39 ± 0.14 to 0.50 ± 0.16, and the lowest was rivers, which also increased from 0.33 ± 0.12 to 0.41 ± 0.14. The multi-function score was closely related to the wetland type and urban development direction over the past two decades, and it was negatively correlated with production and living density, providing new ideas for wetland ecological protection and construction in Wuhan City.
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