Carbon Monoxide Adducts Research Articles

The role of the distal cavity in carbon monoxide stabilization in the coproheme decarboxylase enzyme from C. diphtheriae

This work focuses on the carbon monoxide adducts of the wild-type and selected variants of the coproheme decarboxylase from actinobacterial Corynebacterium diphtheriae complexed with coproheme, monovinyl monopropionyl deuteroheme (MMD), and heme b. The UV − vis and resonance Raman spectroscopies together with the molecular dynamics simulations clearly show that the wild-type coproheme-CO adduct is characterized by two CO conformers, one hydrogen-bonded to the distal H118 residue and the other showing a weak polar interaction with the distal cavity. Instead, upon conversion to heme b, i.e. after decarboxylation of propionates 2 and 4 and rotation by 90o of the porphyrin ring inside the cavity, CO probes a less polar environment. In the absence of the H118 residue, both coproheme and heme b complexes form only the non-H-bonded CO species. The unrotated MMD-CO adduct as observed in the H118F variant, confirms that decarboxylation of propionate 2 only, does not affect the heme cavity. The rupture of both the H-bonds involving propionates 2 and 4 destabilizes the porphyrin inside the cavity with the subsequent formation of a CO adduct in an open conformation. In addition, in this work we present data on CO binding to reversed heme b, obtained by hemin reconstitution of the H118A variant, and to heme d, obtained by addition of an excess of hydrogen peroxide. The results will be discussed and compared with those reported for the representatives of the firmicute clade.

Effect of the Electron Density of the Heme Fe Atom on the Nature of Fe-O2 Bonding in Oxy Myoglobin.

Mössbauer spectroscopy has been used to characterize oxygenated myoglobins (oxy Mbs) reconstituted with native and chemically modified 57Fe-enriched heme cofactors with different electron densities of the heme Fe atom (ρFe) and to elucidate the effect of a change in the ρFe on the nature of the bond between heme Fe and oxygen (O2), i.e., the Fe-O2 bond, in the protein. Quadrupole splitting (ΔEQ) was found to decrease with decreasing ρFe, and the observed ρFe-dependent ΔEQ confirmed an increase in the contribution of the ferric-superoxide (Fe3+-O2-) form to the resonance hybrid of the Fe-O2 fragment with decreasing ρFe. These observations explicitly accounted for the lowering of O2 affinity of the protein due to an increase in the O2 dissociation rate and a decrease in the autoxidation reaction rate of oxy Mb through decreasing H+ affinity of the bound ligand with decreasing ρFe. Therefore, the present study demonstrated the mechanism underlying the electronic control of O2 affinity and the autoxidation of the protein through the heme electronic structure. Carbon monoxide (CO) adducts of reconstituted Mbs (CO-Mbs) were similarly characterized, and we found that the resonance between the two canonical forms of the Fe-CO fragment was also affected by a change in ρFe. Thus, the nature of the Fe-ligand bond in the protein was found to be affected by the ρFe.

Formally Ferric Heme Carbon Monoxide Adduct.

Formally ferric carbonyl adducts are reported in a series of thiolate-bound iron porphyrins. Resonance Raman data indicate the presence of both Fe-S and Fe-CO bonds, and EPR data of this S = 1/2 species indicate a ligand-based electron hole, giving this complex an Fe(II)-thiyl radical electronic ground state. The FTIR data show that the C-O vibrations are substantially higher than in the corresponding ferrous-thiolate CO adducts. DFT calculations reproduce the spectroscopic features and indicate that backbonding to the low lying π* orbitals of the bound CO stabilizes the Fe 3d orbitals resulting in a stabilization of the ferrous-thiyl radical ground state compared to the five-coordinate ferric-thiolate precursor complexes. Access to stable thiyl radicals will help understand these elusive species that are mostly encountered as short-lived reactive reaction intermediates.

Superelectrophilicity of 1,2-Azaborine: Formation of Xenon and Carbon Monoxide Adducts.

The BN analogue of ortho-benzyne, 1,2-azaborine, is shown to bind carbon monoxide and a xenon atom under matrix isolation conditions, demonstrating its strongly Lewis acidic superelectrophilic nature. The Lewis acid-base complexes involving CO and Xe can be cleaved photochemically and reformed by mildly annealing the matrices. The interaction energy of 1,2-azaborine with Xe is 3 kcal mol-1 according to quantum chemical computations, and is similar to that of the superelectrophilic carbene difluorovinylidene.

Characterization of Catalytic Activities and Heme Coordination Structures of Heme-DNA Complexes Composed of Some Chemically Modified Hemes and an All Parallel-Stranded Tetrameric G-Quadruplex DNA Formed from d(TTAGGG).

Heme binds selectively to the 3'-terminal G-quartet (G6 G-quartet) of an all parallel-stranded tetrameric G-quadruplex DNA, [d(TTAGGG)]4, to form a heme-DNA complex. Complexes between [d(TTAGGG)]4 and a series of chemically modified hemes possessing a heme Fe atom with a variety of electron densities were characterized in terms of their peroxidase activities to evaluate the effect of a change in the electron density of the heme Fe atom (ρFe) on their activities. The peroxidase activity of a complex decreased with a decreasing ρFe, supporting the idea that the activity of the complex is elicited through a reaction mechanism similar to that of a peroxidase. In the ferrous heme-DNA complex, carbon monoxide (CO) can bind to the heme Fe atom on the side of the heme opposite the G6 G-quartet, and a water molecule (H2O) is coordinated to the Fe atom as another axial ligand, trans to the CO. The stretching frequencies of Fe-bound CO (νCO) and the Fe-C bond (νFe-C) of CO adducts of the heme-DNA complexes were determined to investigate the structural and electronic natures of the axial ligands coordinated to the heme Fe atom. Comparison of the νCO and νFe-C values of the heme-DNA complexes with those of myoglobin (Mb) revealed that the donor strength of the axial ligation trans to the CO in a complex is considerably weaker than that of the proximal histidine in Mb, as expected from the coordination of H2O trans to the CO in the complex.

Electrophilic Formylation of Arenes by Silylium Ion Mediated Activation of Carbon Monoxide.

Arene-stabilized silylium ions react with carbon monoxide rather than carbon monoxide adducts of silylium ions reacting with arenes. This mechanism is supported by quantum-chemical calculations. Even sterically hindered mesitylene and electronically deactivated chlorobenzene engage in this electrophilic aromatic substitution. The silylium ion mediated formylation corresponds to Gattermann-Koch reactions promoted by strong Brønsted acids. The resulting silylcarboxonium ion of the arenecarbaldehyde was crystallographically characterized, for the first time revealing the molecular structure of this synthetically important intermediate.

Monoanionic, Bis(pyrazolyl)methylborate [(Ph3B)CH(3,5-(CH3)2Pz)2)]- as a Supporting Ligand for Copper(I)-ethylene, cis-2-Butene, and Carbonyl Complexes.

The monoanionic bidentate ligand [(Ph3B)CH(3,5-(CH3)2Pz)2)]- has been prepared from lithium bis(pyrazolyl)methanide and triphenylborane. This useful new ligand is closely related to the well-established bis(pyrazolyl)borate and bis(pyrazolyl)methane ligands but has key differences to both analogues as well. The ethylene, cis-2-butene, and carbon monoxide adducts [(Ph3B)CH(3,5-(CH3)2Pz)2]Cu(L) (where L = C2H4, cis-CH3HC═CHCH3, and CO) have been prepared from [(Ph3B)CH(3,5-(CH3)2Pz)2)]Li(THF), copper(I) triflate, and the corresponding coligand. These complexes have been characterized by NMR spectroscopy and X-ray crystallography. In all cases the bis(pyrazolyl) moiety is bound in κ2N fashion with the BPh3 group rotated to sit over the metal center, sometimes coordinating to the metal via phenyl carbons as in [(Ph3B)CH(3,5-(CH3)2Pz)2)]Li(THF) and [(Ph3B)CH(3,5-(CH3)2Pz)2]Cu(CO) or simply hovering above the metal site as in [(Ph3B)CH(3,5-(CH3)2Pz)2)]Cu(C2H4) and [(Ph3B)CH(3,5-(CH3)2Pz)2)]Cu(cis-CH3HC═CHCH3). The 13C and 1H resonances of the ethylene carbon and protons of [(Ph3B)CH(3,5-(CH3)2Pz)2)]Cu(C2H4) appear at δ 81.0 and 3.71 ppm in CD2Cl2, respectively. The characteristic CO frequency for [(Ph3B)CH(3,5-(CH3)2Pz)2]Cu(CO) has been observed at υ̅ 2092 cm-1 by infrared spectroscopy and is lower than that of free CO suggesting moderate M → CO π-back-donation. A detailed analysis of these complexes has been presented herein.

Main-Group Metallomimetics: Transition Metal-like Photolytic CO Substitution at Boron.

The carbon monoxide adduct of an unhindered and highly reactive CAAC-bound arylborylene, [(CAAC)B(CO)Ar] (CAAC = cyclic (alkyl) (amino)carbene), has been prepared using a transfer reaction from the linear iron borylene complex [(PMe3) (CO)3Fe=BAr]. [(CAAC)B(CO)Ar] is a source of the dicoordinate [(CAAC)ArB:] borylene that can be liberated by selective photolytic CO extrusion and that, although highly reactive, is sufficiently long-lived to react intermolecularly. Through trapping of the borylene generated in this manner, we present, among others, the first metal-free borylene(I) species containing a nitrogen-based donor, as well as a new boron-containing radical.

Characterization of the interaction between heme and a parallel G-quadruplex DNA formed from d(TTGAGG)

Structure-function relationships of complexes between heme and G-quadruplex DNAs have attracted interest from researchers in related fields. A carbon monoxide adduct of a complex between heme and a parallel G-quadruplex DNA formed from hexanucleotide d(TTGAGG) (heme-[d(TTGAGG)]4 complex) has been characterized using 1H NMR spectroscopy, and the obtained results were compared with those for the heme-[d(TTAGGG)]4 complex previously studied in order to elucidate the effect of the incorporation of an A-quartet into stacked G-quartets in the 3′-terminal region of the DNA on the structure of the heme-DNA complex. We found that a π-π stacking interaction between the porphyrin moiety of the heme and the 3′-terminal G-quartet of the DNA is affected by the nature of the stacked G-quartets. This finding provides novel insights as to the design of the molecular architecture of a heme-DNA complex.This article is part of a Special Issue entitled "G-quadruplex" Guest Editor: Dr. Concetta Giancola and Dr. Daniela Montesarchio.

Characterization of Heme-DNA Complexes Composed of Some Chemically Modified Hemes and Parallel G-Quadruplex DNAs.

Heme {Fe(II)- or Fe(III)-protoporphyrin IX complex [heme(Fe(2+)) or heme(Fe(3+)), respectively]} binds selectively to the 3'-terminal G-quartet of a parallel G-quadruplex DNA formed from a single repeat sequence of the human telomere, d(TTAGGG), through a π-π stacking interaction between the porphyrin moiety of the heme and the G-quartet. The binding affinities of some chemically modified hemes(Fe(3+)) for DNA and the structures of complexes between the modified hemes(Fe(2+)) and DNA, with carbon monoxide (CO) coordinated to the heme Fe atom on the side of the heme opposite the G6 G-quartet, have been characterized to elucidate the interaction between the heme and G-quartet in the complexes through analysis of the effects of the heme modification on the structural properties of the complex. The study revealed that the binding affinities and structures of the complexes were barely affected by the heme modification performed in the study. Such plasticity in the binding of heme to the G-quartet is useful for the versatile design of the complex through heme chemical modification and DNA sequence alteration. Furthermore, exchangeable proton signals exhibiting two-proton intensity were observed at approximately -3.5 ppm in the (1)H nuclear magnetic resonance (NMR) spectra of the CO adducts of the complexes. Through analysis of the NMR results, together with theoretical consideration, we concluded that the heme(Fe(2+)) axial ligand trans to CO in the complex is a water molecule (H2O). Identification of the Fe-bound H2O accommodated between the heme and G-quartet planes in the complex provides new insights into the structure-function relationship of the complex.

Carbon Monoxide Residues in Vacuum-Packed Yellowfin Tuna Loins (Thunnus Albacares).

The use of carbon monoxide (CO) in fresh fish has generated considerable debate. Carbon monoxide is used to treat fresh fish in order to retain its fresh red appearance for a longer period. It reacts with the oxy-myoglobin to form a fairly stable cherry red carboxy-myoglobin complex that may mask spoilage, because the CO-complex can be stable beyond the microbiological shelf life of the meat. The presence of CO in tuna fish (Thunnus Albacares) has been investigated by means of optical spectroscopy. Formation of the CO adduct can be easily detected by the combined analysis of electronic absorption spectra in their normal and second derivative modes, monitoring the intense Soret band at 420 nm. Samples were judged as CO treated when their levels were higher than 200 ng/g. Only two positive samples out of 29 analyzed were detected. The high level of uncertainty (0.30) of the method requires the use of more specific and sensitive methods for confirmatory analysis.

A Model for the Flexibility of the Distal Histidine in Dehaloperoxidase-Hemoglobin A Based on X-ray Crystal Structures of the Carbon Monoxide Adduct

Dehaloperoxidase hemoglobin A (DHP A) is a multifunctional hemoglobin that appears to have evolved oxidative pathways for the degradation of xenobiotics as a protective function that complements the oxygen transport function. DHP A possesses at least two internal binding sites, one for substrates and one for inhibitors, which include various halogenated phenols and indoles. Herein, we report the X-ray crystallographic structure of the carbonmonoxy complex (DHPCO). Unlike other DHP structures with 6-coordinated heme, the conformation of the distal histidine (H55) in DHPCO is primarily external or solvent exposed, despite the fact that the heme Fe is 6-coordinated. As observed generally in globins, DHP exhibits two distal histidine conformations (one internal and one external). In previous structural studies, we have shown that the distribution of H55 conformations is weighted strongly toward the external position when the DHP heme Fe is 5-coordinated. The large population of the external conformation of the distal histidine observed in DHPCO crystals at pH 6.0 indicates that some structural factor in DHP must account for the difference from other globins, which exhibit a significant external conformation only when pH < 4.5. While the original hypothesis suggested that interaction with a heme-Fe-bound ligand was the determinant of H55 conformation, the current study forces a refinement of that hypothesis. The external or open conformation of H55 is observed to have interactions with two propionate groups in heme, at distances of 3.82 and 2.73 Å, respectively. A relatively weak hydrogen bonding interaction between H55 and CO, combined with strong interactions with heme propionate (position 6), is hypothesized to strengthen the external conformation of H55. Density function theory (DFT) calculations were conducted to test whether there is a weaker hydrogen bond interaction between H55 and heme bonded CO or O2. Molecular dynamics simulations were conducted to examine how the tautomeric forms of H55 affect the dynamic motions of the distal histidine that govern the switching between open and closed conformations. The calculations support the modified hypothesis suggesting a competition between the strength of interactions with heme ligand and the heme propionates as the factors that determine the conformation of the distal histidine.

Fourier Transform Infrared Spectroscopic Investigation of the Binary and Ternary Cyanide Adducts of the Oxidized Horseradish Peroxidase: Identification of a Second Stretching Mode for the Carbon-Nitrogen Bond of the Bound Cyanide Ion

ABSTRACT The binary and ternary cyanide adducts of the ferric horseradish peroxidase were investigated by Fourier transform infrared spectroscopy. The carbon-nitrogen bond of the bound cyanide ion in the binary ferric cyanohorseradish peroxidase exhibits two stretching vibrations at 2130 cm−1 and 2127 cm−1 with the latter mode being observed in this work for the first time. This finding supports the results of the resonance Raman study of cyanohorseradish peroxidase, which identified two iron-carbon-nitrogen bending vibrations and two iron-carbon stretching vibrations, proving the existence of two conformational states. The identification of the latter carbon-nitrogen stretching frequency allowed the assignment of all of the vibrational modes of the iron-carbon-nitrogen groups of the two conformational states of the ferric cyanohorseradish peroxidase. The first conformer is characterized by a carbon-nitrogen stretch at 2130 cm−1, an iron-carbon stretch at 453 cm−1, and an iron-carbon-nitrogen bending mode at 405 cm−1. The second state has a carbon-nitrogen stretch at 2127 cm−1, an iron-carbon stretch at 360 cm−1, and an iron-carbon-nitrogen bending mode at 422 cm−1. The iron-carbon stretching band is weakly sensitive to pH changes, but it is sensitive to H2O/D2O substitution, indicating that the bound cyanide ion in cyanohorseradish peroxidase is hydrogen bonded to the surrounding protein. The two states were attributed to variation in the extent of hydrogen bonding of the iron-carbon-nitrogen groups in the two states. The carbon-nitrogen stretching vibrations of the ternary complexes of cyanohorseradish peroxidase with ferulic acid, benzamide, and benzhydroxamic acid have been investigated for the first time. The binding of the substrate to cyanohorseradish peroxidase does not always lead to the vanishing of one of the conformational states as in the carbon monoxide adducts of the ferrous horseradish peroxidase, but can cause shifts in the νC-N frequency and in the relative population of both conformational states.

Carbonylation of Cyclotrisilenes

Carbon monoxide (CO) is a common ligand in transitionmetal chemistry. In organic chemistry, it is frequently used to introduce a C1 unit, although carbonylations, such as hydroformylation or the Pauson–Khand reaction, generally require a transition-metal catalyst, even for strained (and thus highly reactive) cyclic compounds. Only a few reports on the reactivity of CO towards compounds of main-group elements other than carbon are available. Although known since the pioneering work by Schlesinger and Burg in the 1930s, borane–CO adducts are usually unstable at room temperature. Only recently, Piers et al. reported a stable adduct between the very Lewis acidic perfluorinated pentaphenylborole and CO. The hydroborating Lewis acid (F5C6)2BH incorporates CO assisted by a alkenyl-functionalized phosphine in a frustrated Lewis pair (FLP) mechanism. A B(C6F5)3-based FLP is capable of stoichiometric CO reduction with dihydrogen. A few coordinatively unsaturated and thus Lewis acidic organic species, such as transient triplet carbenes, and Bertrand s cyclic alkyl amino carbenes react with CO in the absence of transition metals, forming ketenes. Despite growing appreciation of the capability of main group species to activate small molecules, such as H2 and NH3, [10] reactions of stable low-valent compounds of the heavier elements with CO have not, to our knowledge, been reported. Transient silylene–CO adducts, however, have been observed in the gas phase and in cold matrices. We have recently shown that reactions of cyclotrisilenes with N-heterocyclic carbenes (NHCs) reversibly afford cyclotrisilene–NHC adducts, which in the case of 1a can undergo reversible ring-opening to form a highly unsaturated NHCstabilized disilenylsilylene. Isonitriles also react with cyclotrisilenes, and, mindful of the isoelectronic relationship to CO, we became interested in the reactivity of the latter. Herein, we report the facile reaction of carbon monoxide with cyclotrisilenes in the absence of a catalyst to form highly functionalized cyclic silenes. Exposure of a benzene solution of cyclotrisilene 1a to 1 atm of CO at 25 8C results in precipitation of a yellow powder within a few hours, which owing to its insolubility cannot be characterized spectroscopically. A reaction for several days without stirring under otherwise identical conditions afforded bright yellow single crystals. Elemental analysis confirmed the incorporation of one equivalent of CO per molecule of 1a. X-ray crystallography revealed the product to be the tricyclic Brook-type bis(silene) 2a, formally arising from two molecules each of 1a and CO (Scheme 1, Figure 1). With a p-donating oxygen atom at carbon, 2a is reminiscent of donor-stabilized silenes with inverse polarization,

CO bonding in FeN4 complexes and the effect of the macrocycle ligand: A DFT study

This paper presents a theoretical study using density functional theory (DFT) to investigate the bonding between carbon monoxide (CO) molecules and type FeN4 macrocycle complexes of iron to form FeN4–CO adducts. In order to understand how different macrocycle ligands affect this interaction, CO molecules were bound to the following complexes: iron–porphyrin (FeP), iron–tetraaza[14]annulene (FeTAA), iron–tetramethyl-tetraaza[14]annulene (FeTMTAA), iron–dibenzotetraaza[14]annulene (FeDBTAA), and iron–tetramethyl-dibenzotetraaza[14]annulenes (FeTMDBTAA1, FeTMDBTAA2). The best description of the systems investigated was provided by the Lanl2TZ(f)/6-31G⁎ basis set, which was therefore used throughout the work. Analysis of the factors influencing the CO bonding process showed that different macrocycle ligands produced adducts that were different in terms of CO bond length, total CO fragment charge, CO vibrational frequency, and CO bond order. The activity of the interaction between CO and the iron-complex was inversely proportional to the energy gap between the HOMO of the FeN4 complex and the LUMO of CO. Finally, a greater degree of back-bonding was characterized by increased occupancy of the px and py orbitals of the O atom of the CO fragment, confirming that the TAAs were more active than porphyrin, in the ascending order: FeP<FeDBTAA<FeTMDBTAA2<FeTMDBTAA1<FeTAA<FeTMTAA.

New heme–dioxygen and carbon monoxide adducts using pyridyl or imidazolyl tailed porphyrins

Inspired by the chemistry relevant to dioxygen storage, transport and activation by metalloproteins, in particular for heme/copper oxidases, and carbon monoxide binding to metal-containing active sites as a probe or surrogate for dioxygen binding, a series of heme derived dioxygen and CO complexes have been designed, synthesized, and characterized with respect to their physical properties and reactivity. The focus of this study is in the description and comparison of three types heme–superoxo and heme–CO adducts. The starting point is in the characterization of the reduced heme complexes, [(F8)FeII], [(PPy)FeII] and [(PIm)FeII], where F8, PPy and PIm are iron(II)–porphyrinates and where PPy and PIm possess a covalently tethered axial base pyridyl or imidazolyl group, respectively. The spin-state properties of these complexes vary with solvent. The low temperature reactions between O2 and these reduced porphyrin FeII complexes yield distinctive low spin heme–superoxo adducts. The dioxygen binding properties for all three complexes are shown to be reversible, via alternate argon or O2 bubbling. Carbon monoxide binds to the reduced heme–FeII precursors to form low spin heme–CO adducts. The implications for future investigations of these heme O2 and CO adducts are discussed.

Nickel-mediated hydrogenolysis of C-O bonds of aryl ethers: what is the source of the hydrogen?

Mechanistic studies of the hydrogenolysis of aryl ethers by nickel were undertaken with (diphosphine)aryl methyl ethers. A Ni(0) complex containing Ni-arene interactions adjacent to the aryl-O bond was isolated. Heating led to aryl-O bond activation and generation of a nickel aryl methoxide complex. Formal β-H elimination from this species produced a nickel aryl hydride which can undergo reductive elimination in the presence of formaldehyde to generate a carbon monoxide adduct of Ni(0). The reported complexes map out a plausible mechanism of aryl ether hydrogenolysis catalyzed by nickel. Investigations of a previously reported catalytic system using isotopically labeled substrates are consistent with the mechanism proposed in the stoichiometric system, involving β-H elimination from a nickel alkoxide rather than cleavage of the Ni-O bond by H(2).

Structural characterization of a carbon monoxide adduct of a heme–DNA complex

The structure of a carbon monoxide (CO) adduct of a complex between heme and a parallel G-quadruplex DNA formed from a single repeat sequence of the human telomere, d(TTAGGG), has been characterized using ¹H and ¹³C NMR spectroscopy and density function theory calculations. The study revealed that the heme binds to the 3'-terminal G-quartet of the DNA though a π-π stacking interaction between the porphyrin moiety of the heme and the G-quartet. The π-π stacking interaction between the pseudo-C₂-symmetric heme and the C₄-symmetric G-quartet in the complex resulted in the formation of two isomers possessing heme orientations differing by 180° rotation about the pseudo-C₂ axis with respect to the DNA. These two slowly interconverting heme orientational isomers were formed in a ratio of approximately 1:1, reflecting that their thermodynamic stabilities are identical. Exogenous CO is coordinated to heme Fe on the side of the heme opposite the G-quartet in the complex, and the nature of the Fe-CO bond in the complex is similar to that of the Fe-CO bonds in hemoproteins. These findings provide novel insights for the design of novel DNA enzymes possessing metalloporphyrins as prosthetic groups.

Preparation and Function of Poly(acrylic acid)s Modified by Supramolecular Complex Composed of Porphinatoiron and a Cyclodextrin Dimer That Bind Diatomic Molecules (O2 and CO) in Aqueous Solution

Poly(acrylic acid) (PAA) is modified by 5-(4-β-alanylaminophenyl)-10,15,20-tris(4-sulfonatophenyl) porphinatoiron(III) to yield iron porphyrin-bearing PAAs (FeP(n)s) through a condensation reaction. FeP(n)s were further functionalized by Py3CD, which is a per-O-methylated β-cyclodextrin (CD) dimer with a pyridine linker and includes the porphyrin pendants to form ferric hemoCD-P(n)s. Ferrous hemoCD-P(3), having three porphyrin chromophores in a polymer chain, is shown to bind molecular oxygen (P(1/2)=7.9±1.4 Torr) in aqueous solution at pH 7.0 and 25 °C, affording oxy-hemoCD-P(3). Oxy-hemoCD-P(3) is biphasically autoxidized to ferric hemoCD-P(3), with 27% of the dioxygen adducts being rapidly oxidized. The rate of autoxidation of oxy-hemoCD-P(15), having 15 porphyrin chromophores in a polymer chain, was much faster than that of oxy-hemoCD-P(3), thus suggesting self-catalyzed autoxidation of oxy-hemoCD-P(n)s. Oxy-hemoCD-P(n)s are markedly stabilized by catalase, thereby indicating that hydrogen peroxide generated from oxy-hemoCD-P(n) accelerates the autoxidation. Most of the hemoCD-P(3) molecules injected into the femoral vein of a rat remained in the body, though about 16% of the hemoCD-P(3) molecules were excreted in the urine as a carbon monoxide adduct.

Probing the Chemotaxis Periplasmic Sensor Domains from Geobacter sulfurreducens by Combined Resonance Raman and Molecular Dynamic Approaches: NO and CO Sensing

The periplasmic sensor domains encoded by genes gsu0582 and gsu0935 are part of methyl accepting chemotaxis proteins in the bacterium Geobacter sulfurreducens (Gs). The sensor domains of these proteins contain a heme-c prosthetic group and a PAS-like fold as revealed by their crystal structures. Biophysical studies of the two domains showed that nitric oxide (NO) binds to the heme in both the ferric and ferrous forms, whereas carbon monoxide (CO) binds only to the reduced form. In order to address these exogenous molecules as possible physiological ligands, binding studies and resonance Raman (RR) spectroscopic characterization of the respective CO and NO adducts were performed in this work. In the absence of exogenous ligands, typical RR frequencies of five-coordinated (5c) high-spin and six-coordinated (6c) low-spin species were observed in the oxidized form. In the reduced state, only frequencies corresponding to the latter were detected. In both sensors, CO binding yields 6c low-spin adducts by replacing the endogenous distal ligand. The binding of NO by the two proteins causes partial disruption of the proximal Fe-His bond, as revealed by the RR fingerprint features of 5cFe-NO and 6cNO-Fe-His species. The measured CO and NO dissociation constants of ferrous GSU0582 and GSU0935 sensors reveal that both proteins have high and similar affinity toward these molecules (K(d) approximately = 0.04-0.08 microM). On the contrary, in the ferric form, sensor GSU0582 showed a much higher affinity for NO (K(d) approximately = 0.3 microM for GSU0582 versus 17 microM for GSU0935). Molecular dynamics calculations revealed a more open heme pocket in GSU0935, which could account for the different affinities for NO. Taken together, spectroscopic data and MD calculations revealed subtle differences in the binding properties and structural features of formed CO and NO adducts, but also indicated a possibility that a (5c) high-spin/(6c) low-spin redox-linked equilibrium could drive the physiological sensing of Gs cells.