Our study employed laser capture microdissection to selectively collect endothelial (EC) and smooth muscle cells (SMC) from patent canine femoral artery bypass cephalic vein grafts (n=3) and normal contralateral cephalic vein controls (harvested after 24 hours). Total RNA was purified, converted to cDNA, and prepared for Affymetrix Canine 2.0 GeneChip hybridization (43,036 probes, 16,984 genes). Sample purities were measured via qRT‐PCR (EC: CD31, eNOS, vWF; SMC: α‐actin 2, SMC‐MHCII). Chip normalization and analysis were executed with BioConductor and dChip. Significantly up‐ (UR) or downregulated (DR) graft genes had =2.0 fold change versus control and absolute lower confidence bound of =2.0. Human genes were matched using BLAST PERL. Average isolate purities were 43‐78% for EC and 79‐100% for SMC. In grafts versus controls, 2101 genes were differentially expressed in EC and 1753 in SMC. UR genes: 1112 in EC, 729 in SMC, 322 in common. DR genes: 989 in EC, 1024 in SMC, 444 in common. Clustering analysis showed unique clustering of graft versus control EC and SMC. Gene ontology analysis exhibited predominant gene functions in protein binding (EC & SMC), cellular processes involved in inflammation (EC) and cell motility (SMC) and localizations to the plasma membrane (EC) and ECM (SMC). LCM is effective in separating gene responses in the intima from the media of vein grafts. NIH 5 T32 HL007734 & 5 R01 HL086741 to FWL
Read full abstract