Calibration Data Set Research Articles

Predictions for the abundance and clustering of Hα emitting galaxies

Abstract We predict the surface density and clustering bias of Hα emitting galaxies for the Euclid and Nancy Grace Roman Space Telescope redshift surveys using a new calibration of the GALFORM galaxy formation model. We generate 3000 GALFORM models to train an ensemble of deep learning algorithms to create an emulator. We then use this emulator in a Markov Chain Monte Carlo (MCMC) parameter search of an eleven-dimensional parameter space, to find a best-fitting model to a calibration dataset that includes local luminosity function data, and, for the first time, higher redshift data, namely the number counts of Hα emitters. We discover tensions when exploring fits for the observational data when applying a heuristic weighting scheme in the MCMC framework. We find improved fits to the Hα number counts while maintaining appropriate predictions for the local universe luminosity function. For a flux limited Euclid-like survey to a depth of 2 × 10−16 erg−1 s−1 cm−2 for sources in the redshift range 0.9 < z < 1.8, we estimate 2962-4331 Hα emission-line sources deg−2. For a Nancy Grace Roman survey, with a flux limit of 1 × 10−16 erg−1 s−1 cm−2 and a redshift range 1.0 < z < 2.0, we predict 6786-10322 Hα emission-line sources deg−2.

Early Modeling of the Upcoming Landsat Next Constellation for Soybean Yield Prediction Under Varying Levels of Water Availability

The upcoming Landsat Next will provide more frequent land surface observations at higher spatial and spectral resolutions that will greatly benefit the agricultural sector. Early modeling of the upcoming Landsat Next products for soybean yield prediction is essential for long-term satellite monitoring strategies. In this context, this article evaluates the contribution of Landsat Next’s improved spectral resolution for soybean yield prediction under varying levels of water availability. Ground-based hyperspectral data collected over five cropping seasons at the Brazilian Agricultural Research Corporation were resampled to Landsat Next spectral resolution. The spectral dataset (n = 384) was divided into calibration and external validation datasets and investigated using three strategies for soybean yield prediction: (1) using the reflectance from each spectral band; (2) using existing and new vegetation indices developed based on three general equations: Normalized Difference Vegetation Index (NDVI-like), Band Ratio Vegetation Index (RVI-like), and Band Difference Vegetation Index (DVI-like), replacing the traditional spectral bands by all possible combinations between two bands for index calculation; and (3) using a partial least squares regression (PLSR) model composed of all Landsat Next spectral bands, in comparison to PLSR models using Landsat OLI and Sentienel-2 MSI bands. The results show the distribution of the new spectral bands over the most prominent changes in leaf reflectance due to water deficit, particularly in the visible and shortwave infrared spectrum. (1) Band 18 (centered at 1610 nm) had the highest correlation with yield (R2 = 0.34). (2) A new vegetation index, called Normalized Difference Shortwave Vegetation Index (NDSWVI), is proposed and calculated from bands 19 and 20 (centered at 2028 and 2108 nm). NDSWVI showed the best performance (R2 = 0.37) compared to traditional existing and new vegetation indices. (3) The PLSR model gave the best results (R2 = 0.65), outperforming the Landsat OLI and Sentinel-2 MSI sensors. The improved spectral resolution of Landsat Next is expected to contribute to improved crop monitoring, especially for soybean crops in Brazil, increasing the sustainability of the production systems and strengthening food security in Brazil and globally.

Rapid Classification of Sugarcane Nodes and Internodes Using Near-Infrared Spectroscopy and Machine Learning Techniques

Accurate and rapid discrimination between nodes and internodes in sugarcane is vital for automating planting processes, particularly for minimizing bud damage and optimizing planting material quality. This study investigates the potential of visible-shortwave near-infrared (Vis–SWNIR) spectroscopy (400–1000 nm) combined with machine learning for this classification task. Spectral data were acquired from the sugarcane cultivar Khon Kaen 3 at multiple orientations, and various preprocessing techniques were employed to enhance spectral features. Three machine learning algorithms, linear discriminant analysis (LDA), K-Nearest Neighbors (KNNs), and artificial neural networks (ANNs), were evaluated for their classification performance. The results demonstrated high accuracy across all models, with ANN coupled with derivative preprocessing achieving an F1-score of 0.93 on both calibration and validation datasets, and 0.92 on an independent test set. This study underscores the feasibility of Vis–SWNIR spectroscopy and machine learning for rapid and precise node/internode classification, paving the way for automation in sugarcane billet preparation and other precision agriculture applications.

Estimating soil water retention curves over the entire saturation range: A thermal conductivity-based approach

The relationship between soil water content (θ) and suction (h, referring to the absolute value of pressure head), is described by the soil water retention curve (SWRC). Our earlier research (Fu et al. (2021, 2023a) [J. Hydrol.127171]; [J. Hydrol.129898]) recognized underlying correlations between SWRCs and soil thermal conductivity (λ) versus θ curves, and developed methodologies to ascertain the parameters of the van Genuchten (vG) equation using λ(θ) measurements, described by the Ghanbarian & Daigle (GD) equation, and basic soil characteristics. Limitations intrinsic to the van Genuchten equation restrict the GD-vG approach to generate precise estimates only in the wet and medium suction range, specifically h ranging from 0 to 150 mH2O. The validity of these approaches in the dry region remains uncertain. In this study, we associated the Peters-Durner-Iden (PDI) model parameters to those of the GD model. An initial examination was performed on the linearization processes needed to derive the hydraulic continuity water content (θhc) from the capillary water component as characterized by the PDI model and to choose the suction at oven dryness (h0) based on PDI model performance. Subsequently, two piecewise functions and two pedo-transfer functions were formulated to compute the PDI model parameters utilizing soil porosity, particle size distribution, and GD parameters, based on a calibration dataset comprising 25 different soils. The new GD-PDI approach was subsequently assessed with six independent soils and juxtaposed with the previous GD-vG approach. The GD-PDI approach outperformed the GD-vG approach, particularly within the dry range.

Combinatorial Order Pre-processing Search (COPS): A new pre-processing strategy for large-scale interpretable data analysis in process analytical technologies

Combinatorial Order Pre-processing Search (COPS), a novel approach for optimizing data pre-processing is proposed in this work. Unlike simultaneous hyperparameter optimization, COPS employs a priori optimization to reduce computational time while refining the search space for preprocessing sequences and combinations. It allows for setting a maximum number of pre-processing methods, while efficiently searching through combinations of methods with chemically relevant knowledge. In this work, 67 calibration datasets across various analytical techniques, including fluorescence spectroscopy, gas chromatography (GC), near-infrared spectroscopy (NIR), mid-infrared spectroscopy (MIR), visible-near-infrared spectroscopy (Vis-NIR), Raman spectroscopy, nuclear magnetic resonance (NMR) spectroscopy, and voltammetry were evaluated. COPS yielded significant improvements over existing methodologies based on design of experiment and compounded pre-processing approaches. The COPS outperformed the other methods, resulting in an average root mean square error of prediction (RMSEP) reduction of 31.7%, while also reduced the complexity (number of latent variables) of the model which allows for easier interpretation. This underscores the importance of combinatorial order set theory for the search of pre-processing method combinations (without fixing the sequence of pre-processing methods) to enhance model performance and interpretation. The novel COPS approach can be employed in process analytical technology (such as inline, online or at-line chemical sensing analytics) to enhance predictive accuracy and operational efficiency, fundamentally transforming the quality and reliability of chemical process monitoring and control.

How uncertainty in calibration data affects the modeling of non-point source pollutant loads in baseflow

Baseflow is a major transport pathway for non-point source (NPS) pollutants. Watershed water quality (WWQ) models calibrated by low-quality data may produce misleading predictions of baseflow NPS pollutant loads, resulting in poor management decisions. We evaluated how models of the baseflow nitrate loads in the Huron River basin, southwest of Lake Erie, were affected by uncertainty in the calibration data. Based on a five-year time series of daily streamflow, nitrate concentration, and specific conductance, two sets of “observed” baseflow nitrate load data that include uncertainty were estimated using various tracer-based and non-tracer-based hydrograph separation methods, in conjunction with assumptions regarding baseflow nitrate concentrations. We calibrated the Soil and Water Assessment Tool plus (SWAT+) model with the two “observed” data sets and used the Generalized Likelihood Uncertainty Estimation (GLUE) approach to quantify parameter and predictive uncertainties. The results showed that baseflow accounted for 26 %–34 % of the mean annual total streamflow (11.8 m3/s) and 8 %–37 % of the mean annual total nitrate load (14.3 kg·ha−1·year−1) in the Huron River basin. The baseflow and nitrate load estimates from the non-tracer-based methods resembled those from the tracer-based method but had greater uncertainty. The posterior parameter distributions, as well as the weighted means and 90 % prediction intervals of the simulated baseflow nitrate loads, exhibited minimal variation when different calibration data sets for SWAT+ and different threshold likelihood values for GLUE were used. Our analysis emphasizes the necessity of calibrating WWQ models with baseflow pollutant loads/concentrations when addressing water quality issues related to baseflow. It also demonstrates the feasibility of utilizing multiple non-tracer-based hydrograph separation methods to estimate baseflow NPS pollutant loads. These non-tracer-based methods offer a simplicity and broader applicability compared to tracer-based methods. This study has provided insights into how calibration data uncertainty impacts the modeling of NPS pollution in baseflow and highlights the practical value of non-tracer-based hydrograph separation methods.

Fast and simultaneous prediction of inner quality parameters on intact mangos by near infrared spectroscopy: Impact of spectra pre-processing on prediction accuracy

Near infrared spectroscopy or known as NIRS has been widely employed in many fields including agriculture, especially for sorting and grading of agricultural products. Spectra pre-processing is one of the main factors affecting model accuracy and prediction capabilities of NIRS. The objective of the present study was to study the impact of different spectra corrections namely mean centering (MC), mean normalization (MN), de-trending (DT), multiplicative scatter correction (MSC), standard normal variate (SNV) and orthogonal signal correction (OSC), to the prediction accuracy of quality parameters: titratable acidity (TA) and soluble solids content (SSC) in intact mango. A total of 91 mango samples (cv. Kent) were used as dataset for calibration and external prediction which was separated by means of systematic sampling based on a property (SSBP) approach. Diffuse reflectance spectra (log1/R) were acquired and recorded in wavelength range of 1000 – 2500 nm by Antaris Fourier transform NIR instrument. Judging from calibration and prediction performance, MSC found to be the best spectra pre-processing method prior to prediction model development with R2 prediction are 0.72 for TA and 0.76 for SSC. Although MSC increase the prediction performances based on R2, RMSE, RPD and RER metrics compared to the baseline, the achieved RPD, 1.9 for TA and 1.8 for SSC of this findings are still poor and need improvements to achieve even higher levels of accuracy and reliability necessitates for real-time applications.

Self-supervised learning of Vision Transformers for digital soil mapping using visual data

In arid environments, prospecting cultivable land is challenging due to harsh climatic conditions and vast, hard-to-access areas. However, the soil is often bare, with little vegetation cover, making it easy to observe from above. Hence, remote sensing can drastically reduce costs to explore these areas. For the past few years, deep learning has extended remote sensing analysis, first with Convolutional Neural Networks (CNNs), then with Vision Transformers (ViTs). The main drawback of deep learning methods is their reliance on large calibration datasets, as data collection is a cumbersome and costly task, particularly in drylands. However, recent studies demonstrate that ViTs can be trained in a self-supervised manner to take advantage of large amounts of unlabelled data to pre-train models. These backbone models can then be finetuned to learn a supervised regression model with few labelled data.In our study, we trained ViTs in a self-supervised way with a 9500 km2 satellite image of dry-lands in Saudi Arabia with a spatial resolution of 1.5 m per pixel. The resulting models were used to extract features describing the bare soil and predict soil attributes (pH H2O, pH KCl, Si composition). Using only RGB data, we can accurately predict these soil properties and achieve, for instance, an RMSE of 0.40 ± 0.03 when predicting alkaline soil pH. We also assess the effectiveness of adding additional covariates, such as elevation. The pretrained models can as well be used as visual features extractors. These features can be used to automatically generate a clustered map of an area or as input of random forests models, providing a versatile way to generate maps with limited labelled data and input variables.

The modified external parameter orthogonalization with removed PC2 to remove effectively the moisture effect on the spectra

In situ visible–near infrared spectroscopy holds great potential in providing information supporting field applications, decision making and management in soil science, especially combined with the information present in the archived soil spectra. However, soil moisture can drastically affect the reflectance curve and reduce prediction accuracy. The external parameter orthogonalization (EPO) can remove the moisture effect but the effect of elimination is urgently needed to be improved. Herein, firstly, we implemented EPO on 50 bootstrapped calibration datasets, which generated from the local soil spectra library, with 255 combinations of PC1 to PC8, resulting in a total of 50*255 models in PLSR and cubist, respectively. Secondly, we calculated the mean prediction results from these 255 combinations and selected the top 10 validation performance results. Thirdly, we performed correlation analysis on SOM with each segment induced by singular value decomposition on the difference of laboratory and in situ spectra to determine which PC should be removed in the modified EPO. Results revealed that top 10 prediction results with principles without PC2 and the moisture effect was mainly in PC1, and PC2 with significant correlation with SOM were removed from the EPO procedure. EPO with removing PC2 (namely Modified EPO) improved the correlation of SOM with some optional bands that directly and indirectly were associated with SOM to improve the SOM prediction accuracy. Modified EPO improved the accuracy in predicting SOM with increased R2 (9 %–44 % and 7 %–17 %) and root mean square error (1 %–9 % and 63 %–68 %) in the PLSR and Cubist model, respectively. Our study highlights the advantage of modified EPO in improving the elimination efficiency of water in spectra, and of PC analysis biplots in approximating the removed PCs.

Developing a European aquatic macrophyte transfer function for reconstructing past lake-water chemistry

Quantitative paleoecological reconstructions using biological proxies, such as diatoms, Cladocera, and chironomids, have revolutionized paleolimnology and have greatly contributed to the understanding of the past local and regional environmental changes, as well as to nature conservation. While macrophytes are good ecological indicators, they have rarely been used to reconstruct past lake-water chemistry. The present study investigates which environmental variable best explains aquatic plant community composition in Finnish, Polish, and Swedish lakes for its further use in quantitative paleoenvironmental reconstructions. The method involved the creation of a modern macrophyte-environment calibration dataset, calculation of modern calibration functions using simple averaging regression, and final reconstruction of past environmental conditions in Lake Linówek (NE Poland) from a fossil assemblage using weighted averaging calibration. The data demonstrate that conductivity and alkalinity best explained macrophyte community composition in our dataset. Species “optima” for alkalinity were influenced by the presence/absence of carbon concentrating mechanisms (CCMs), enabling the utilization of HCO3− as a carbon source. Quantitative paleoenvironmental reconstruction indicates that past water conductivity and alkalinity fluctuated depending on internal lake processes and the supply of basic ions to the lake from the catchment related to climate and soil development in the watershed during the late Glacial (∼14,500–11,700 calibrated years before the present; cal BP) and the Holocene (11,700 cal BP–recent). We conclude that macrophytes can be successfully used for past lake-water chemistry reconstruction. Furthermore, calculated modern calibration functions for conductivity and alkalinity can be used in nature conservation for determining habitat requirements of numerous endangered macrophyte species as a basis for successful (re)introductions.

Monitoring and assessment of spatiotemporal soil salinization in the Lake Urmia region

Soil salinization stands as a prominent global environmental challenge, necessitating enhanced assessment methodologies. This study is dedicated to refining soil salinity assessment in the Lake Urmia region of Iran, utilizing multi-year data spanning from 2015 to 2018. To achieve this objective, soil salinity was measured at 915 sampling points during the 2015–2018 timeframe. Simultaneously, remote sensing data were derived from surface reflectance data over the same study period. Four distinct scenarios were considered such as a newly developed spectral index (Scenario I), the newly developed index combined with other salt-based spectral indices from the literature (Scenario II), indirect spectral indices based on vegetation and soil characteristics (Scenario III), and the amalgamation of both direct and indirect spectral indices (Scenario IV). Linear Regression (LR), Support Vector Machine (SVM), and Random Forest (RF) were employed to assess soil salinity. The measured data divided to 75% of the data as the calibration dataset, while the remaining 25% constituted the validation dataset. The findings revealed a correlation between soil salinity and spectral indices from the literature, with a range of -0.53 to 0.51, while the newly developed spectral index exhibited a stronger correlation (r = 0.59). Furthermore, RF yielded superior results when using the newly developed spectral index (Scenario I). Overall, SVM emerged as the most effective model (ME = -9.678, R2 = 0.751, and RPIQ = 1.78) when integrating direct and indirect spectral indices (Scenario IV). This study demonstrates the efficacy of combining machine learning techniques with a blend of newly developed and existing spectral indices from the literature for the monitoring of soil salinity, particularly in arid and semi-arid regions.

Raman laser intensity and sample clarification on biochemical monitoring over Zika-VLP upstream stages

In the current biopharmaceutical scenario, constant bioprocess monitoring is crucial for the quality and integrity of final products. Thus, process analytical techniques, such as those based on Raman spectroscopy, have been used as multiparameter tracking methods in pharma bioprocesses, which can be combined with chemometric tools, like Partial Least Squares (PLS) and Artificial Neural Networks (ANN). In some cases, applying spectra pre-processing techniques before modeling can improve the accuracy of chemometric model fittings to observed values. One of the biological applications of these techniques could have as a target the virus-like particles (VLP), a vaccine production platform for viral diseases. A disease that has drawn attention in recent years is Zika, with large-scale production sometimes challenging without an appropriate monitoring approach. This work aimed to define global models for Zika VLP upstream production monitoring with Raman considering different laser intensities (200 mW and 495 mW), sample clarification (with or without cells), spectra pre-processing approaches, and PLS and ANN modeling techniques. Six experiments were performed in a benchtop bioreactor to collect the Raman spectral and biochemical datasets for modeling calibration. The best models generated presented a mean absolute error and mean relative error respectively of 3.46 × 105 cell/mL and 35 % for viable cell density (Xv); 4.1 % and 5 % for cell viability (CV); 0.245 g/L and 3 % for glucose (Glc); 0.006 g/L and 18 % for lactate (Lac); 0.115 g/L and 26 % for glutamine (Gln); 0.132 g/L and 18 % for glutamate (Glu); 0.0029 g/L and 3 % for ammonium (NH4+); and 0.0103 g/L and 2 % for potassium (K+). Sample without conditioning (with cells) improved the models' adequacy, except for Glutamine. ANN better predicted CV, Gln, Glu, and K+, while Xv, Glc, Lac, and NH4+ presented no statistical difference between the chemometric tools. For most of the assessed experimental parameters, there was no statistical need for spectra pre-filtering, for which the models based on the raw spectra were selected as the best ones. Laser intensity impacts quality model predictions in some parameters, Xv, Gln, and K+ had a better performance with 200 mW of intensity (for PLS, ANN, and ANN, respectively), for CV the 495 mW laser intensity was better (for PLS), and for the other biochemical variables, the use of 200 or 495 mW did not impact model fitting adequacy.

Prediction of body condition score throughout lactation by random regression test-day models.

Regular monitoring of body condition score (BCS) changes during lactation is a crucial management tool in dairy cattle; however, the current BCS measurements are often discontinuous and unevenly spaced in time. The aim of this study was to investigate the ability of random regression test-day models (RR-TDM) to predict BCS for the entire lactation in dairy cows even if the actual scoring is limited to one BCS record. The data consisted of test-day records of milk yield (MY), fat percentage (FP), protein percentage (PP) and BCS (based on a 9-point scale with unit increments; 1-9) collected from 2014 to 2022 in 128 herds in the Walloon Region of Belgium. In total, 20,698 test-day records on 2166 first-parity Holstein cows (2-12 with an average of 9.42 test-day records per cow) were available for MY, FP and PP; and 7985 records on the same animals (2-12 with an average of 3.68 records per cow) were available for BCS. To estimate the solutions, only one randomly selected BCS record per animal along with all her MY, FP and PP records were used, which were then used to predict BCS data (calibration set). The remaining BCS (1-11 with an average 2.86 BCS records per animal) were used to evaluate the goodness of the predictions (validation set). Multiple-trait RR-TDM was used to estimate (co)variance components through the average information restricted maximum likelihood (AI-REML) algorithm. Predicted BCS were grouped into nine classes as the original observed BCS used for comparison. Pearson correlation between the predicted and observed BCS, prediction error (PE), absolute prediction error (APE) and root mean squared prediction error (RMSE) were calculated. Mean (standard deviation; SD) BCS was 4.97 (1.01), 4.95 (1.07) and 4.98 (1.00) BCS units in the full, calibration and validation datasets, respectively. Pearson correlation between the observed and predicted BCS was 0.71, mean (SD) PE was 0.04 (0.52) BCS units, mean (SD) APE was 0.48 (0.53) BCS units and RMSE was 0.72 BCS units. These findings demonstrate the ability of RR-TDM to predict BCS for the entire lactation using a single BCS record along with available test-day records of milk yield and composition in Holstein dairy cows.

Exploring environmental sustainability through dimension reduction algorithms: A cost-effective UV spectroscopic method for simultaneous determination of veterinary binary mixtures of doxycycline hydrochloride and tylosin tartrate

This study presents a cost-effective and environmentally friendly approach for the simultaneous determination of a veterinary binary mixture comprising doxycycline hydrochloride (DOX) and tylosin tartrate (TYZ) utilizing UV spectroscopy alongside dimension reduction algorithms (DRAs). Seventeen DRAs were evaluated, and their performances were compared based on four metrics: mean squared error (MSE), mean absolute error (MAE), median absolute error (MedAE), and coefficient of determination (R2). Based on the performance indices, Isomap algorithm demonstrated the highest predictive capacity among all DRAs. MSE, MAE, MedAE and R2 values of (0.38, 0.28, 0.19 and 0.999) and (0.08, 0.26, 0.22 and 0.998) were obtained for calibration and test datasets, respectively across a concentration range 4.67–30 μg mL−1 for DOX. MSE, MAE, MedAE and R2 values of (0.54, 0.34, 0.19 and 0.994) and (0.07, 0.19, 0.07 and 0.998) were obtained for calibration and test datasets, respectively across a concentration range 3.51–24 μg mL−1 for TYZ. The developed method underwent validation utilizing the accuracy profile approach. An ecological impact assessment was carried out employing six greenness evaluation tools: The Green Solvent Selection Tool (GSST), National Environmental Methods Index (NEMI), the Assessment of Green Profile (AGP), carbon footprint analysis, Analytical Greenness Calculator (AGREE), and Complementary Green Analytical Procedure Index (Complex GAPI). Additionally, we applied blueness and whiteness assessments using Blue Applicability Grade Index (BAGI) and Red-Green-Blue 12 (RGB 12) algorithms, respectively. The proposed method demonstrated higher GSST scores, a more "green" profile in NEMI, a superior AGP profile, and better environmental sustainability in Complex GAPI. The calculated carbon footprint value was 0.0002 kg CO2 equivalent per sample, The AGREE score was 0.87, BAGI was assessed at 72.5, and the whiteness assessment by the RGB12 algorithm was 89.6. Statistical comparison of the proposed method with a previously reported HPLC method for dosage form analysis revealed no significant differences at a 95% confidence level. This study highlights the novelty of combining UV spectroscopy with dimension reduction algorithms, offering significant advancements over traditional UV and chemometric methods for the analysis of these drugs. This approach not only enhances the efficiency and accuracy of determining active ingredients in pharmaceutical dosage forms but also contributes to environmental sustainability.

Extended Fayans energy density functional: optimization and analysis

The Fayans energy density functional (EDF) has been very successful in describing global nuclear properties (binding energies, charge radii, and especially differences of radii) within nuclear density functional theory. In a recent study, supervised machine learning methods were used to calibrate the Fayans EDF. Building on this experience, in this work we explore the effect of adding isovector pairing terms, which are responsible for different proton and neutron pairing fields, by comparing a 13D model without the isovector pairing term against the extended 14D model. At the heart of the calibration is a carefully selected heterogeneous dataset of experimental observables representing ground-state properties of spherical even–even nuclei. To quantify the impact of the calibration dataset on model parameters and the importance of the new terms, we carry out advanced sensitivity and correlation analysis on both models. The extension to 14D improves the overall quality of the model by about 30%. The enhanced degrees of freedom of the 14D model reduce correlations between model parameters and enhance sensitivity.

Simulating the development and growth of lentil using the CSM‐CROPGRO model

AbstractThe pulse crop lentil (Lens culinaris Medik.) is often grown in crop rotations to provide nitrogen (N) and water benefits for subsequent crops. Lentil yields vary greatly with environmental factors and management. A reliable crop model for lentil could assist efforts to assess the effects of management practices to mitigate environmental stresses and maximize lentil yields. However, few crop models simulate the development and growth of lentil. In this study, we adapted the CSM‐CROPGRO model in the Decision Support System for Agrotechnology Transfer to simulate lentil development and growth based on data collected from six experiments conducted from 2001 to 2021 globally. The initial parameter values taken from faba bean (Vicia faba L.) were modified based on reported information and analysis of observed data. Those values were fine‐tuned to minimize the gaps between the simulated and observed crop attributes. The model simulated well development stages with root mean square error (RMSE) of 4 days and aboveground biomass with normalized root mean square error (nRMSE ≤ 23%). Seed yields were generally well simulated across experiments in calibration and validation (nRMSE = 19%) datasets, except for overestimation under the humid environment of Quebec in Canada, which may have resulted from excessive vegetative growth. The underlying mechanisms leading to excessive vegetative growth need to be explored further and included in the model for evaluating the adaptability of lentils to specific regions. Overall, the CSM‐CROPGRO‐Lentil model is ready for simulating lentil production under various scenarios, which may identify ways to improve the productivity and resiliency of cropping systems that include lentil.

Substrate Moisture and Temperature Effects on Limestone Reaction Rate in a Peat-Based Substrate

ABSTRACT Lime reaction rate in a container substrate is influenced by temperature and moisture, which are factors that vary between batches of substrate during manufacturing, storage, and crop production. The effects of temperature and moisture on the duration required to achieve a stable substrate-pH are useful information for substrate companies and growers, as well as a key component when modeling lime reaction over time. The pH of a 70 peat : 30 perlite (by volume) substrate was quantified over time under a range of different storage temperature (1.9 to 33.3°C) and substrate volumetric water content (VWC, 0.168 to 0.568 L of H2O/L of substrate). The lime source was a horticultural dolomitic carbonate limestone screened to the fraction that passed through a 100 US mesh but was retained on a 200 US mesh (0.075–0.15 mm) incorporated at 2.67 g·L−1 of substrate. Experiments provided two data sets for calibration and validation. Lime reaction rate increased with increasing substrate temperature and substrate moisture level. The duration required to reach a target substrate-pH value of 6.0 was used to indicate 90% of maximum pH effect from lime. Duration varied from 4 days with the combined high temperature (20.6 and 33.3 °C) and high VWC (0.468 and 0.568 L H2O/L of substrate) to 53 days with low temperature (1.9 °C) and low VWC (0.168 L H2O/L of substrate) for the calibration data set. At an example low VWC of 0.168 L of H2O/L of substrate, the duration required to reach substrate-pH 6.0 at 1.9, 7.8, 10, 20.6, and 33.3°C was 53, 38, 34, 23, and 17 days, respectively. Similarly, if the temperature was held constant at 33.3°C, reducing VWC from 0.568 L H2O/L to 0.128 L H2O/L would decrease lime reaction rate from 100% to 21%, requiring five times the duration to reach an equilibrium pH. Results can be used to compare the relative effects of moisture and temperature on lime reaction rate for substrate manufacturers and growers.

Discrimination of tea seed oil adulteration based on near-infrared spectroscopy and combined preprocessing method

Near-infrared spectroscopy and chemometrics was used to qualitatively distinguish the types of adulterated oils in binary adulteration of tea seed oil in this study. To address the limitations of a single preprocessing method, nine preprocessing methods from four categories were combined, and the impact of preprocessing method order on model accuracy was assessed. Additionally, variable iterative space shrinkage approach (VISSA), interval combinatorial optimization (ICO), and uninformative variables elimination (UVE) were used to screen characteristic wavelengths. Subsequently, a discriminative model for tea seed oil adulteration was constructed using two strategies. The results indicate that the order of preprocessing methods significantly influences model accuracy, and combining preprocessing methods can effectively enhance model accuracy. All three characteristic wavelength selection methods effectively screened characteristic variables. Both two strategies demonstrate good discriminant capabilities for binary adulteration in tea seed oil. In strategy 1, identification accuracies for the calibration, prediction and external datasets are 98.67 %, 100 % and 94.44 %, respectively. In strategy 2, identification accuracies for the calibration, prediction and external datasets are 100 %, 98 % and 94.44 %, respectively. Therefore, integrating NIRS with combined preprocessing and variable screening can effectively discern the types of adulterated oils in tea seed oil, serving as a potent detection tool.

Estimation of botanical composition of forage crops using laboratory-based hyperspectral imaging and near-infrared spectrometer measurements

Harvested forage is the main raw feed for ruminant animals in Sweden, and is commonly cultivated in mixed stands of legume and grass species. The fraction of legume on a dry matter basis, known as botanical composition (BC) is a very important indicator of forage quality. In this study, hyperspectral imaging and near-infrared spectrometer (NIRS) based methods were used to estimate BC, to overcome the shortcomings of hand separation, which is time and resource consuming. Timothy and red clover mix samples were collected from different harvests in 2017–2019 from multiple sites in Northern Sweden and hand separated. The samples were synthetically mixed to 11 different BC levels, i.e., 0–100 % clover content. Two different instruments (Specim shortwave infrared (SWIR) hyperspectral imaging system and Foss 6500 spectrometer) were used to collect spectral data of samples milled to two levels of coarseness. Three different regression analyses: partial least squares regression (PLSR), support vector regression (SVR) and random forest regression (RFR), were used to build BC estimation models. The effects of the milling particle sizes and the different instruments on the performances of the models were compared. The data from second harvest in 2019 were used for independent validation as evaluation, and the rest of data were randomly split for model calibration (75 %) and validation (25 %). The models were iteratively run 1000 times with different splits, to check the effect from the splitting of calibration and validation datasets. Among different regression analyses, PLSR performed best, with mean Nash-Sutcliffe efficiency (NSE) for model evaluation from 0.76 to 0.87, varying for different instruments and milling sizes. Finer milling made the model accuracies slightly higher. This study developed quick and robust methods to determine the BC of timothy grass and red clover mixtures, which can provide useful information for farmers or researchers.

Exploring PCSWMM for Large Mixed Land Use Watershed by Establishing Monitoring Sites to Evaluate Stream Water Quality

Extensive hydrologic and water quality modeling within a watershed benefits from long-term flow and nutrient data sets for appropriate model calibration and validation. However, due to a lack of local water quality data, simpler water quality modeling techniques are generally adopted. In this study, the monitoring sites were established at two different locations to collect hydraulic data for the hydraulic calibration and validation of the model. In addition, water quality samples were collected at eight monitoring sites and analyzed in the lab for various parameters for calibration. This includes total suspended solids (TSS), soluble phosphorus, five-day biochemical oxygen demand (BOD5), and dissolved oxygen (DO). The Personal Computer Storm Water Management Model (PCSWMM) 7.6 software was used to simulate all the pollutant loads using event mean concentrations (EMCs). The performance of the model for streamflow calibration at the two USGS gauging stations was satisfactory, with Nash–Sutcliffe Efficiency (NSE) values ranging from 0.51 to 0.54 and coefficients of determination (R2) ranging from 0.71 to 0.72. The model was also validated with the help of historical flow data with NSE values ranging from 0.5 to 0.79, and R2 values ranging from 0.6 to 0.95. The hydraulic calibration also showed acceptable results with reasonable NSE and R2 values. The water quality data recorded at the monitoring stations were then compared with the simulated water quality modeling results. The model reasonably simulated the water quality, which was evaluated through visual inspection using a scatter plot. Our analysis showed that the upstream tributaries, particularly from agricultural areas, were contributing more pollutants than the downstream tributaries. Overall, this study demonstrates that the PCSWMM, which was typically used for modeling urban watersheds, could also be used for modeling larger mixed land use watersheds with reasonable accuracy.