Membrane filtration processes with flux reversal for backwashing are employed to manage fouling during colloidal fluid treatment. This flux reversal accompanies filtration cycles where the total resistance increases over time. However, little is known about the initial phase of filtration. We focus on early filtration phase and present a microfluidic filtration system that allows precise observation of filtration resistances under constant flux or constant pressure operation for soft matter dead-end filtration with subsequent percolation of pure solvent. We identified temporal hydraulic resistance fluctuations during the start-up phase, which significantly differed from the steady-state condition. We focus on the experimental filtration of soft core–shell poly(N-isopropylacrylamide)-co-acrylic-acid microgels and observed a distinct peak in filter cake resistance with a subsequent reduction down to 50% of the initial peak resistance. To comprehend the phenomenon, we complement the experiments with temporal and spatial confocal microscopy studies linking cake compression and cake density gradients to its resistance. By comparing filtration, dialysis, and centrifugation as different microgel purification methods, we discover microgel shell degradation leading to detached polymer chains permeating in the downstream which causes the observed resistance reduction. This result demonstrates the permeation-induced degradation of macromolecular colloids during membrane filtration.
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