Bud Set Research Articles

Dormancy characteristics of lammas-growth seedlings of subtropical trees and their phenological responses to experimental warming.

Lammas growth of trees means the additional growth of the shoot after the growth cessation and bud set in late summer. In temperate tree species, lammas growth occurs irregularly and is often regarded as abnormal, disturbed growth. In subtropical tree species, however, lammas growth is a prevalent phenomenon, possibly due to the prolonged occurrence of high temperatures in the autumn. The occurrence of lammas growth extends the growing season of trees, but its influence on subsequent dormancy phenomena and bud burst phenology remains largely unexplored. By comparing seedlings showing lammas growth with others not showing it, we carried out an experimental study of how lammas growth affects the bud burst phenology and the underlying dormancy phenomena under both ambient and controlled chilling, forcing, and warming conditions in four subtropical tree species: Carya illinoinensis, Cinnamomum japonicum, Phoebe chekiangensis, and Torreya grandis. With the exception of C. illinoinensis, lammas growth delayed bud burst in all the species under ambient conditions. In a chilling experiment, the delay appeared to be due to higher minimum forcing requirement, higher dormancy depth, and in T. grandis, also to lower chilling sensitivity in the lammas-growth seedlings than in the non-lammas-growth ones. However, a spring warming experiment showed that the sensitivity of bud burst to spring temperatures was higher in the lammas-growth seedlings than in the non-lammas-growth ones. Because of this, the difference between the two phenotypes in the timing of bud burst vanished with increasing warming. Our findings elucidate the significant impact of lammas growth on the dormancy dynamics of subtropical tree species, highlighting the necessity to better understand how the physiological phenomena causing lammas growth change the trees' subsequent environmental responses under changing climatic conditions.

Using machine learning algorithms to cluster and classify stone pine (Pinus pinea L.) populations based on seed and seedling characteristics

AbstractThe phenotype of a woody plant represents its unique morphological properties. Population discrimination and individual classification are crucial for breeding populations and conserving genetic diversity. Machine Learning (ML) algorithms are gaining traction as powerful tools for predicting phenotypes. The present study is focused on classifying and clustering the seeds and seedlings in terms of morphological characteristics using ML algorithms. In addition, the k-means algorithm is used to determine the ideal number of clusters. The results obtained from the k-means algorithm were then compared with reality. The best classification performance achieved by the Random Forest algorithm was an accuracy of 0.648 and an F1-Score of 0.658 for the seed traits. Also, the best classification performance for stone pine seedlings was observed for the k-Nearest Neighbors algorithm (k = 18), for which the accuracy and F1-Score were 0.571 and 0.582, respectively. The best clustering performance was achieved with k = 2 for the seed (average Silhouette index = 0.48) and seedling (average Silhouette Index = 0.51) traits. According to the principal component analysis, two dimensions accounted for 97% and 63% of the traits of seeds and seedlings, respectively. The most important features between the seed and seedling traits were cone weight and bud set, respectively. This study will provide a foundation and motivation for future efforts in forest management practices, particularly regarding reforestation, yield optimization, and breeding programs.

Beyond floral initiation: the role of flower bud dormancy in flowering time control of annual plants.

The phenology of temperate perennials, including the timing of vegetative growth and flowering, is well known to be controlled by seasonal dormancy cycles. Dormant structures are known as buds and have specialized covering structures, symplastic isolation from the plant, and often autonomous stores of carbon and nitrogen reserves. In contrast, in annual plants, our current understanding of the control of the timing of flowering focuses on the mechanisms affecting floral initiation, the transition from a vegetative apical meristem to a inflorescence meristem producing flower primordia in place of leaves. Recently we revealed that annual crops in Brassicaceae exhibit chilling-responsive growth control in a manner closely resembling bud dormancy breakage in perennial species. Here I discuss evidence that vernalization in autumn is widespread and further discuss its role in inducing flower bud set prior to winter. I also review evidence that flower bud dormancy has a more widespread role in annual plant flowering time control than previously appreciated.

Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

BackgroundDespite the increasing number of epigenomic studies in plants, little is known about the forces that shape the methylome in long-lived woody perennials. The Lombardy poplar offers an ideal opportunity to investigate the impact of the individual environmental history of trees on the methylome.ResultsWe present the results of three interconnected experiments on Lombardy poplar. In the first experiment, we investigated methylome variability during a growing season and across vegetatively reproduced generations. We found that ramets collected over Europe and raised in common conditions have stable methylomes in symmetrical CG-contexts. In contrast, seasonal dynamics occurred in methylation patterns in CHH context. In the second experiment, we investigated whether methylome patterns of plants grown in a non-parental environment correlate with the parental climate. We did not observe a biological relevant pattern that significantly correlates with the parental climate. Finally, we investigated whether the parental environment has persistent carry-over effects on the vegetative offspring’s phenotype. We combined new bud set observations of three consecutive growing seasons with former published bud set data. Using a linear mixed effects analysis, we found a statistically significant but weak short-term, parental carry-over effect on the timing of bud set. However, this effect was negligible compared to the direct effects of the offspring environment.ConclusionsGenome-wide cytosine methylation patterns in symmetrical CG-context are stable in Lombardy poplar and appear to be mainly the result of random processes. In this widespread poplar clone, methylation patterns in CG-context can be used as biomarkers to infer a common ancestor and thus to investigate the recent environmental history of a specific Lombardy poplar. The Lombardy poplar shows high phenotypic plasticity in a novel environment which enabled this clonal tree to adapt and survive all over the temperate regions of the world.

ELONGATED HYPOCOTYL 5a modulates FLOWERING LOCUS T2 and gibberellin levels to control dormancy and bud break in poplar.

Photoperiod is a crucial environmental cue for phenological responses, including growth cessation and winter dormancy in perennial woody plants. Two regulatory modules within the photoperiod pathway explain bud dormancy induction in poplar (Populus spp.): the circadian oscillator LATE ELONGATED HYPOCOTYL 2 (LHY2) and GIGANTEA-like genes (GIs) both regulate the key target for winter dormancy induction FLOWERING LOCUS T2 (FT2). However, modification of LHY2 and GIs cannot completely prevent growth cessation and bud set under short-day (SD) conditions, indicating that additional regulatory modules are likely involved. We identified PtoHY5a, an orthologs of the photomorphogenesis regulatory factor ELONGATED HYPOCOTYL 5 (HY5) in poplar (Populus tomentosa), that directly activates PtoFT2 expression and represses the circadian oscillation of LHY2, indirectly activating PtoFT2 expression. Thus, PtoHY5a suppresses SD-induced growth cessation and bud set. Accordingly, PtoHY5a knockout facilitates dormancy induction. PtoHY5a also inhibits bud-break in poplar by controlling gibberellic acid (GA) levels in apical buds. Additionally, PtoHY5a regulates the photoperiodic control of seasonal growth downstream of phytochrome PHYB2. Thus, PtoHY5a modulates seasonal growth in poplar by regulating the PtoPHYB2-PtoHY5a-PtoFT2 module to determine the onset of winter dormancy, and by fine-tuning GA levels to control bud-break.

SPL16 and SPL23 mediate photoperiodic control of seasonal growth in Populus trees.

Perennial trees in boreal and temperate regions undergo growth cessation and bud set under short photoperiods, which are regulated by phytochrome B (phyB) photoreceptors and PHYTOCHROME INTERACTING FACTOR 8 (PIF8) proteins. However, the direct signaling components downstream of the phyB-PIF8 module remain unclear. We found that short photoperiods suppressed the expression of miR156, while upregulated the expression of miR156-targeted SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE 16 (SPL16) and SPL23 in leaves and shoot apices of Populus trees. Accordingly, either overexpression of MIR156a/c or mutagenesis of SPL16/23 resulted in the attenuation of growth cessation and bud set under short days (SD), whereas overexpression of SPL16 and SPL23 conferred early growth cessation. We further showed that SPL16 and SPL23 directly suppressed FLOWERING LOCUS T2 (FT2) expression while promoted BRANCHED1 (BRC1.1 and BRC1.2) expression. Moreover, we revealed that PIF8.1/8.2, positive regulators of growth cessation, directly bound to promoters of MIR156a and MIR156c and inhibited their expression to modulate downstream pathways. Our results reveal a connection between the phyB-PIF8 module-mediated photoperiod perception and the miR156-SPL16/23-FT2/BRC1 regulatory cascades in SD-induced growth cessation. Our study provides insights into the rewiring of a conserved miR156-SPL module in the regulation of seasonal growth in Populus trees.

Respon Pertumbuhan Bibit Dua Varietas Tanaman Tebu (Saccharum Officinarum L.) Pada Beberapa Letak Mata Tunas Asal Bud Set Di Media Pottray

Sugarcane (Saccharum Officiarum L.) is a plant with high economic value, especially in developing countries with tropical climates such as Indonesia, because of the high sugar content in the stems. Preparation of seeds and determination of specific location superior varieties is one of the determining factors for the success of sugarcane cultivation. This research was conducted to determine the effect of bud location from bud set and several varieties on the growth of sugarcane seedlings. The research was conducted from July to December 2022, at the Jember State Polytechnic nursery using a two-factor Randomized Group Design (RAKF). The results showed that good germination growth came from the location of the scion buds. The location of the buds has a significant effect on the parameters of the number of leaves and the number of tillers. Kinds of sugarcane varieties had a significant effect on plant height (cm), number of leaves, number of tillers. The VMC 76-16 variety was the best for the number of leaves and plant height parameters, while the GMP 04 variety was the best for the number of tillers. The interaction of the effect of the location of the bud buds from the bud set and the variety of varieties had a significant effect on height growth (cm) at the age of 28 and 42 days after planting. The results of this study can be concluded that the location of the bud eye and the type of variety have a significant effect on the growth of sugarcane plants and there is a significant interaction on the plant height parameter.

Pengaruh Asal Bahan tanam dan Macam Varietas tebu (Saccarum officinarum. L) Terhadap Pertumbuhan Vegetatif Bibit pada Potray

Sugarcane as a raw material for the sugar industry is included in plantation commodities which play an important role in the economy in Indonesia. Sugarcane plants are propagated conventionally by using stem parts that have buds. This conventional method has the disadvantage that it requires a longer time, requires a large area of nursery land and the resulting seeds are less uniform. In addition to mule seeds, there are sugarcane seeds from one bud, namely a single bud (Bud Set) and a single bud (Bud Chip). This study aims to determine the vegetative growth of sugarcane seedlings in pot trays based on the treatment of the origin of the planting material and the treatment of the use of various varieties and the relationship between the use of several origins of planting materials and the types of sugarcane varieties on the vegetative growth of sugarcane (Saccharum officinarum L.) seedlings. This research was conducted from July to November 2022 at the Jember State Polytechnic on soil types associated with regosol latosol. The experimental design used was a factorial randomized block design (RAKF) consisting of 2 factors. The first factor is the origin of the planting material: Bud Chip (B1) and Bud Set (B2). The second factor is the variety of varieties consisting of the Cenning variety (V1), the GMP 04 (V2) variety, and the VMC 76-16 (V3) variety. The results showed that the original treatment of planting material had a significant effect on the vegetative growth of sugarcane in the parameters of sugarcane height (cm), number of leaves (strands) of sugarcane, and number of tillers (fruit). While the treatment of various varieties of sugarcane did not affect the vegetative growth of sugarcane on the parameters of height (cm), the number of leaves (strands), the number of tillers (fruit), and there was no interaction between the origin of the planting material and the types of sugarcane varieties on vegetative growth on the height parameter. seedlings (cm), number of leaves (strands), number of tillers (fruits

Respon Pertumbuhan Bibit Bud Set Tebu (Saccarum officinarum L.) Pada Aplikasi Mikroorganisme Lokal Dari Fermentasi Ekstrak Keong Emas

Sugarcane plant (Saccarum officinarum L.) is one of the plantation commodities as a raw material for sugar production. The success rate of sugar production is greatly influenced by productivity, one of which is nursery techniques and soil nutrient requirements. In the nursery aspect, the innovation of the single bud planting (SBP) or Bud set method of sugarcane seeding is currently the recommended technology for sugarcane nurseries. The advantages of the Bud set include simultaneous growth, no need for large areas of land, early maturing seeds, and high quality and certainty of life. But for alternative fertilizers that currently can use organic fertilizers from materials around. One of them is a biological organic fertilizer containing Local Microorganisms (MOL) made from golden snail, where the tryptophan amino acid compound is the precursor compound for ZPT Indole Acetic Acid (IAA) so that it can be used as a growth regulator. The golden snail MOL treatment used a concentration of 0% (control); 2.5%; 5.0%; 7.5%; 10.0%; 12.5% ​​with an application frequency of 2 weeks and 4 weeks on 180 sugarcane seeds. The aim of the study was to examine the use of liquid organic fertilizer from golden snail on the productivity of sugarcane. The best results of the study and the parameters used occurred in the 8th week, namely, stem diameter 1.09 cm, number of tillers 3,6, root wet weight 18,23 grams, root dry weight 6,33 grams, and root length 32,33 cm

Comparing phenocam color indices with phenological observations of black spruce in the boreal forest

Bud phenology identifies the growing period of trees and determines the pattern of mass and energy exchanges between forest and atmosphere over time and space. Canopy color metrics derived from phenocams have been widely used to investigate tree phenology. However, it remains unclear which color-based index better tracks the seasonal variations of tree phenology in evergreen forest ecosystems. Herein, we compared four color metrics (red chromatic coordinate (RCC), green chromatic coordinate (GCC), vegetation contrast index (VCI) and excess green index (ExG)) derived from phenocam images with bud phenological phases recorded in black spruce [Picea mariana (Mill.) B.S·P] during 2017–2020 at a boreal forest site in Quebec, Canada. Canopy redness (RCC) and greenness (GCC, ExG, and VCI) showed a bimodal and bell-shaped seasonal pattern, respectively. The phases of bud burst and bud set lasted from end-May to end-June and from mid-July to end-September, respectively. The neural network model indicated that GCC had the best predictive ability in capturing the sequential phases of bud phenology. Bud phenological phases predicted by GCC showed the highest correlation with actual bud phenological phases among four indices, with R2 above 0.9 and RMSE lower than 0.5. Overall, color indices performed better when representing bud burst than bud set. Our findings improve the efficiency and confidence of the phenocam greenness index to characterize the growing season of evergreen forests.

Potential of Endophytic Fungi as Plant Growth-Promoting Fungi (PGPF) Against Growth of Single Bud Set Seedlings on Sugarcane Plants (Saccharum officinarum L)

Increase of sugarcane productivity must be followed by improvements to a more environmentally sound cultivation system. One of them is the use of endophytes. Endophytic fungi are indeed included in the group of growth-promoting fungi or Plant Growth Promoting Fungi / PGPF and are known to secrete growth hormones such as Indole Acetic Acid (IAA), gibberellin so that they can spur growth. This study aims to determine the type of endophytic fungus that can potentially be PGPF in sugarcane breeding. The research uses sampling methods, exploration, and application of PGPF in sugarcane plants. The results of the identification of endophytic exploration fungi of sugarcane plants obtained five colonies consisting of 4 genera and four species from Trichoderma sp., Aspergillus sp., Penicillium sp., and Fusarium sp. From the results of the potency test, the results were obtained that the soaking of bud set seeds with isolates of the fungus Trichoderma sp., Penicillium sp. Noticeable effect on plant height, stem diameter, and the number of leaves.

Potential of Endophytic Fungi as Plant Growth-Promoting Fungi (PGPF) Against Growth of Single Bud Set Seedlings on Sugarcane Plants (Saccharum officinarum L)

Increase of sugarcane productivity must be followed by improvements to a more environmentally sound cultivation system. One of them is the use of endophytes. Endophytic fungi are indeed included in the group of growth-promoting fungi or Plant Growth Promoting Fungi / PGPF and are known to secrete growth hormones such as Indole Acetic Acid (IAA), gibberellin so that they can spur growth. This study aims to determine the type of endophytic fungus that can potentially be PGPF in sugarcane breeding. The research uses sampling methods, exploration, and application of PGPF in sugarcane plants. The results of the identification of endophytic exploration fungi of sugarcane plants obtained five colonies consisting of 4 genera and four species from Trichoderma sp., Aspergillus sp., Penicillium sp., and Fusarium sp. From the results of the potency test, the results were obtained that the soaking of bud set seeds with isolates of the fungus Trichoderma sp., Penicillium sp. Noticeable effect on plant height, stem diameter, and the number of leaves.

Diallel crosses in Picea abies III. Variation and inheritance patterns in nursery trials

Abstract The complete diallel cross is the only mating design that provides estimates of variance components of general combining (GCA), specific combining ability (SCA), maternal and reciprocal effects, in addition to heritabilities and genetic correlations. To obtain such estimates, complete diallels were made among 10 trees in each of three natural Norway spruce populations from altitude 300 and 500 m in Norway. Nursery trials were performed with the families from these crosses and families from seeds collected from open pollination. Traits measured and analysed are seed weight, germination rate, germination percentage, terminal bud set, and seedling heights the first and second years. The seedlings from the population at origin 500 m had lower seed weight, lower heights and earlier bud set than those from the two populations from lower altitude. A considerable variation was present among families within each diallel, and the GCA variance components had the highest values and were significant for most traits. Variance components for SCA and maternal effects were also significant for some traits, but with inconsistent values in the three diallels. A strong relationship was present between the weight of the seed lots from the maternal parent and mean family height after one and two growing seasons. The highest estimate of heritability was observed for bud set, with similar values in all three diallels.

Polyamines and ethylene action blocker (STS) effectively augment longevity and postharvest attributes in isolated flowers of Digitalis purpurea L.

The present investigation focused on the study of the exogenous inclusion of anti-senescence biogenic polyamines (putrescine, spermidine and spermine) and ethylene antagonist silver thiosulphate on flower longevity and postharvest performance in excised flowers of Digitalis purpurea L. At one day before anthesis stage, isolated buds of Digitalis purpurea were transported to the laboratory in distilled water. The samples were divided into five sets with one set of flower buds (i.e., control) held in distilled water. The remaining four sets were respectively supplied with 0.5, 1 and 1.5 mM of putrescine (PUT), 0.1, 0.2 and 0.3 mM of spermidine (SPD), 0.2, 0.4 and 0.6 mM of spermine (SPM), 0.1, 0.2 and 0.3 mM of silver thiosulphate (STS). The inclusion of polyamines and STS in holding solutions enhanced the flower longevity of D. purpurea significantly compared to the control. The results indicated that the flower longevity of 14 days was recorded in 0.4 mM of spermine, followed by 13 days in 1 mM PUT, 12.5 days in 0.2 mM SPD and 12 days in 0.2 mM STS. This enhanced flower longevity corroborated with the higher values of soluble proteins, total sugars, floral diameter and membrane stability index. The improved flower longevity was also found to be positively associated with increased activities of various antioxidant enzymes viz., superoxide dismutase (SOD), catalase (CAT), and ascorbate peroxidase (APX) and reduced activity of lipoxygenase (LOX). The flowers supplemented with different treatments retained a lower phenolic content than the control. This research concluded that polyamines and STS have a profound impact on the flower longevity of Digitalis flowers. SPM was found to be a more potential polyamine in augmenting the postharvest performance in isolated flowers of D. purpurea.

Field and saccharification performances of poplars severely downregulated in CAD1.

Lignin is one of the main factors causing lignocellulosic biomass recalcitrance to enzymatic hydrolysis. Glasshouse-grown poplars severely downregulated for CINNAMYL ALCOHOL DEHYDROGENASE 1 (CAD1), the enzyme catalysing the last step in the monolignol-specific branch of lignin biosynthesis, have increased saccharification yields and normal growth. Here, we assess the performance of these hpCAD poplars in the field under short rotation coppice culture for two consecutive rotations of 1 yr and 3 yr. While 1-yr-old hpCAD wood had 10% less lignin, 3-yr-old hpCAD wood had wild-type lignin levels. Because of their altered cell wall composition, including elevated levels of cinnamaldehydes, both 1-yr-old and 3-yr-old hpCAD wood showed enhanced saccharification yields upon harsh alkaline pretreatments (up to +85% and +77%, respectively). In contrast with previous field trials with poplars less severely downregulated for CINNAMYL ALCOHOL DEHYDROGENASE (CAD), the hpCAD poplars displayed leaning phenotypes, early bud set, early flowering and yield penalties. Moreover, hpCAD wood had enlarged vessels, decreased wood density and reduced relative and free water contents. Our data show that the phenotypes of CAD-deficient poplars are strongly dependent on the environment and underpin the importance of field trials in translating basic research towards applications.

Aspen growth is not limited by starch reserves

All photosynthetic organisms balance CO2 assimilation with growth and carbon storage. Stored carbon is used for growth at night and when demand exceeds assimilation. Gaining a mechanistic understanding of carbon partitioning between storage and growth in trees is important for biological studies and for estimating the potential of terrestrial photosynthesis to sequester anthropogenic CO2 emissions.1,2 Starch represents the main carbon storage in plants.3,4 To examine the carbon storage mechanism and role of starch during tree growth, we generated and characterized low-starch hybrid aspen (Populus tremula×tremuloides) trees using CRISPR-Cas9-mediated gene editing of two PHOSPHOGLUCOMUTASE (PGM) genes coding for plastidial PGM isoforms essential for starch biosynthesis. We demonstrate that starch deficiency does not reduce tree growth even in short days, showing that starch is not a critical carbon reserve during diel growth of aspen. The low-starch trees assimilated up to ∼30% less CO2 compared to the wild type under a range of irradiance levels, but this did not reduce growth or wood density. This implies that aspen growth is not limited by carbon assimilation under benign growth conditions. Moreover, the timing of bud set and bud flush in the low-starch trees was not altered, implying that starch reserves are not critical for the seasonal growth-dormancy cycle. The findings are consistent with a passive starch storage mechanism that contrasts with the annual Arabidopsis and indicate that the capacity of the aspen to absorb CO2 is limited by the rate of sink tissue growth.

Interspecific morphological variation in Juglandoideae resting bud organization: a winter's tale?

Dormant resting buds are frequently regarded as static units, with protective cataphylls on the outside and embryonic foliage leaves on the inside. How the presence of cataphylls influences the dynamic, cyclical, annually repeating sequence of leaf forms that a resting bud gives rise to has rarely been interrogated. To examine the connection between dormant structure and growing-season development, we compare the complete seasonal heteroblastic sequence of leaf forms of six species of temperate Juglandaceae with distinctly different vegetative resting bud structures. These include buds with cataphylls; buds without cataphylls; and buds with caducous cataphylls that are lost before the onset of winter. In a common garden setting over a 7-month growing season, the dimensions of 2249 individual vegetative metamers were tracked from first exposure to abscission along the shoots of saplings and mature trees. The timing of metamer initiation within terminal buds was investigated using micro-CT scanning. Character state transitions of resting bud types were estimated using a phylogenetic tree of Juglandaceae. The presence of cataphylls within a heteroblastic sequence is associated with a single cohort of foliage leaves that flush and abscise synchronously. This growing pattern is highly determinate, with next year's terminal-bud cataphylls already initiated before spring leaf out. In contrast, in sequences without cataphylls, shorter-lived foliage leaves appear and abscise in a staggered fashion. Despite these differences in leaf demography, all examined heteroblastic sequences produce a series of small, caducous leaf forms that precede terminal bud set. The ubiquity of caducous leaf forms in Juglandoideae may point to the importance of shoot tip protection far beyond the dormant season. In addition, the presence or absence of cataphylls in resting buds is indicative of distinct shoot ontogenetic patterns, and functional strategies, in summer.

Populus SVL Acts in Leaves to Modulate the Timing of Growth Cessation and Bud Set.

SHORT VEGETATIVE PHASE (SVP) is an important regulator of FLOWERING LOCUS T (FT) in the thermosensory pathway of Arabidopsis. It is a negative regulator of flowering and represses FT transcription. In poplar trees, FT2 is central for the photoperiodic control of growth cessation, which also requires the decrease of bioactive gibberellins (GAs). In angiosperm trees, genes similar to SVP, sometimes named DORMANCY-ASSOCIATED MADS-BOX genes, control temperature-mediated bud dormancy. Here we show that SVL, an SVP ortholog in aspen trees, besides its role in controlling dormancy through its expression in buds, is also contributing to the regulation of short day induced growth cessation and bud set through its expression in leaves. SVL is upregulated during short days in leaves and binds to the FT2 promoter to repress its transcription. It furthermore decreases the amount of active GAs, whose downregulation is essential for growth cessation, by repressing the transcription of GA20 oxidase. Finally, the SVL protein is more stable in colder temperatures, thus integrating the temperature signal into the response. We conclude that the molecular function of SVL in the photoperiodic pathway has been conserved between Arabidopsis and poplar trees, albeit the physiological process it controls has changed. SVL is thus both involved in regulating the photoperiod response in leaves, modulating the timing of growth cessation and bud set, and in the subsequent temperature regulation of dormancy in the buds.

FLOWERING LOCUS T2 Promotes Shoot Apex Development and Restricts Internode Elongation via the 13-Hydroxylation Gibberellin Biosynthesis Pathway in Poplar.

The adaptation and survival of boreal and temperate perennials relies on the precise demarcation of the growing season. Seasonal growth and development are defined by day length and temperature signals. Under long-day conditions in spring, poplar FLOWERING LOCUS T2 (FT2) systemically induces shoot growth. In contrast, FT2 downregulation induced by autumnal short days triggers growth cessation and bud set. However, the molecular role of FT2 in local and long-range signaling is not entirely understood. In this study, the CRISPR/Cas9 editing tool was used to generate FT2 loss of function lines of hybrid poplar. Results indicate that FT2 is essential to promote shoot apex development and restrict internode elongation under conditions of long days. The application of bioactive gibberellins (GAs) to apical buds in FT2 loss of function lines was able to rescue bud set. Expression analysis of GA sensing and metabolic genes and hormone quantification revealed that FT2 boosts the 13-hydroxylation branch of the GA biosynthesis pathway in the shoot apex. Paclobutrazol treatment of WT leaves led to limited internode growth in the stem elongation zone. In mature leaves, FT2 was found to control the GA 13-hydroxylation pathway by increasing GA2ox1 and reducing GA3ox2 expression, causing reduced GA1 levels. We here show that in poplar, the FT2 signal promotes shoot apex development and restricts internode elongation through the GA 13-hydroxylation pathway.

Identifying and testing marker-trait associations for growth and phenology in three pine species: Implications for genomic prediction.

In tree species, genomic prediction offers the potential to forecast mature trait values in early growth stages, if robust marker–trait associations can be identified. Here we apply a novel multispecies approach using genotypes from a new genotyping array, based on 20,795 single nucleotide polymorphisms (SNPs) from three closely related pine species (Pinus sylvestris, Pinus uncinata and Pinus mugo), to test for associations with growth and phenology data from a common garden study. Predictive models constructed using significantly associated SNPs were then tested and applied to an independent multisite field trial of P. sylvestris and the capability to predict trait values was evaluated. One hundred and eighteen SNPs showed significant associations with the traits in the pine species. Common SNPs (MAF > 0.05) associated with bud set were only found in genes putatively involved in growth and development, whereas those associated with growth and budburst were also located in genes putatively involved in response to environment and, to a lesser extent, reproduction. At one of the two independent sites, the model we developed produced highly significant correlations between predicted values and observed height data (YA, height 2020: r = 0.376, p < 0.001). Predicted values estimated with our budburst model were weakly but positively correlated with duration of budburst at one of the sites (GS, 2015: r = 0.204, p = 0.034; 2018: r = 0.205, p = 0.034–0.037) and negatively associated with budburst timing at the other (YA: r = −0.202, p = 0.046). Genomic prediction resulted in the selection of sets of trees whose mean height was taller than the average for each site. Our results provide tentative support for the capability of prediction models to forecast trait values in trees, while highlighting the need for caution in applying them to trees grown in different environments.