The importance of bubble dynamics in fluidized beds is underscored by the efforts undertaken over the past decades through experimental and numerical studies. Nonetheless, the bubble dynamic evolution and its effects on sub-grid closures were neglected in previous coarse-grid CFD models, particularly for Geldart A particles. In this article, a population balance model with improved kernels was employed to describe the bubble dynamic evolution in three-dimensional bubbling beds, whereby the EMMS drag model was closedto be incorporated into an Eulerian continuum model . Furthermore, the Extended Quadrature Method of Moments (EQMOM) was utilized to reconstruct the number density function of bubble size once their lower moments were obtained. The simulation results showed that the hydrodynamics including bed expansion characteristics, solids concentration and bubble size distribution can be well predicted by the model, indicating its capability to capture the heterogeneous structures in three-dimensional bubbling beds of fine particles.