Brown Planthopper Resistance Genes Research Articles

Exploring the Resistance of Pigmented Rice to Brown Planthopper (Nilaparvata lugens Stål) by Phenotypic and Genotypic Analyses

Developing new pigmented rice varieties that meet consumers' preferences requires addressing resistance to brown planthopper (BPH), a highly destructive insect pest of rice. To effectively manage this pest, it is essential to explore BPH resistance genes from rice germplasms and incorporate them into elite varieties. The objective of this study was to identify the source of resistance among local and improved pigmented rice varieties in Indonesia against field BPH. Furthermore, the study aimed to characterize their genetic diversity using molecular markers associated with Bph genes and functional markers for these genes. Eighty-eight local varieties from the Indonesian Agricultural Gene Bank, collected across 18 provinces between 1971 and 2019, and four improved varieties, were evaluated using the standard seed box screening test method. Among these entries, 6 local accessions and 1 improved variety exhibited moderate resistance. Genetic analysis of these entries and three randomly selected susceptible entries using 12 SSR and InDel markers associated with Bph gene loci showed that the moderately resistant entries had higher allele numbers (11 to 13) compared to the susceptible entries (4 to 7). These markers could distinguish the resistant group from the susceptible ones in cluster analysis. Genotyping using functional markers further showed that the moderately resistant entries had 2 to 4 combinations of Bph genes. In contrast, the susceptible entries contained neither Bph genes nor only one gene. Local accessions with a 2 to 4 Bph gene combination can be donors of BPH resistance in improving pigmented rice varieties.

The Development of Multi-Resistant Rice Restorer Lines and Hybrid Varieties by Pyramiding Resistance Genes against Blast and Brown Planthopper

Rice blast, caused by the fungus Magnaporthe oryzae, and brown planthopper (BPH) infestation are two of the most destructive problems of rice production in China. The development of multi-resistant varieties is widely recognized as the most efficient and environmentally friendly approach to controlling crop diseases and pests. Functional molecular markers (FMMs) have been developed from functional variants in the genic region associated with trait variation, greatly enhancing the efficiency of identifying and pyramiding valuable genes in crop breeding. In this study, two FMMs and a multiplex PCR amplification system were developed for two major broad-spectrum BPH resistance genes, Bph6 and Bph9. With the assistance of FMMs in the multi-resistant rice restorer-line development pipeline, two lines (Huahui7713 and Huahui3006) with blast and BPH resistance were developed by pyramiding three resistance genes Pigm, Bph6 and Bph9. Two new hybrid rice varieties, Weiliangyou7713 and Xuanliangyou3006, derived from Huahui7713 and Huahui3006, have been developed and commercialized in China. Weiliangyou7713 and Xuanliangyou3006 exhibit enhanced resistance to both blast and BPH, while maintaining optimal yield and grain quality. The adoption of Weiliangyou7713 continues to expand, now being cultivated on a large scale, which is promising for its future role in reducing the dependence on chemical fungicides and pesticides in rice production. This suggests that the implementation of Huahui7713 and Huahui3006 in targeted breeding programs could be highly beneficial for developing rice varieties with strong resistance to blast and BPH.

Fine mapping and breeding application of two brown planthopper resistance genes derived from landrace rice.

The Brown planthopper (Nilaparvata lugens Stål; BPH) is known to cause significant damage to rice crops in Asia, and the use of host-resistant varieties is an effective and environmentally friendly approach for controlling BPH. However, genes limited resistance genes that are used in insect-resistant rice breeding programs, and landrace rice varieties are materials resources that carry rich and versatile genes for BPH resistance. Two landrace indica rice accessions, CL45 and CL48, are highly resistant to BPH and show obvious antibiosis against BPH. A novel resistance locus linked to markers 12M16.983 and 12M19.042 was identified, mapped to chromosome 12 in CL45, and designated Bph46. It was finely mapped to an interval of 480 kb and Gene 3 may be the resistance gene. Another resistance locus linked to markers RM26567 and 11MA104 was identified and mapped to chromosome 11 in CL48 and designated qBph11.3 according to the nominating rule. It was finely mapped to an interval of 145 kb, and LOC_Os11g29090 and LOC_Os11g29110 may be the resistance genes. Moreover, two markers, 12M16.983 and 11MA104, were developed for CL45 and CL48, respectively, using marker-assisted selection (MAS) and were confirmed by backcrossing individuals and phenotypic detection. Interestingly, we found that the black glume color is closely linked to the BPH resistance gene in CL48 and can effectively assist in the identification of positive individuals for breeding. Finally, several near-isogenic lines with a 9311 or KW genetic background, as well as pyramid lines with two resistance parents, were developed using MAS and exhibited significantly high resistance against BPHs.

Mapping of a novel recessive brown planthopper resistance gene bph46 from wild rice (Oryza nivara)

Mapping of a novel recessive brown planthopper resistance gene bph46 from wild rice (Oryza nivara)

Combined miRNA and mRNA sequencing reveals the defensive strategies of resistant YHY15 rice against differentially virulent brown planthoppers.

The brown planthopper (BPH) poses a significant threat to rice production in Asia. The use of resistant rice varieties has been effective in managing this pest. However, the adaptability of BPH to resistant rice varieties has led to the emergence of virulent populations, such as biotype Y BPH. YHY15 rice, which carries the BPH resistance gene Bph15, exhibits notable resistance to biotype 1 BPH but is susceptible to biotype Y BPH. Limited information exists regarding how resistant rice plants defend against BPH populations with varying levels of virulence. In this study, we integrated miRNA and mRNA expression profiling analyses to study the differential responses of YHY15 rice to both avirulent (biotype 1) and virulent (biotype Y) BPH. YHY15 rice demonstrated a rapid response to biotype Y BPH infestation, with significant transcriptional changes occurring within 6 hours. The biotype Y-responsive genes were notably enriched in photosynthetic processes. Accordingly, biotype Y BPH infestation induced more intense transcriptional responses, affecting miRNA expression, defenserelated metabolic pathways, phytohormone signaling, and multiple transcription factors. Additionally, callose deposition was enhanced in biotype Y BPH-infested rice seedlings. These findings provide comprehensive insights into the defense mechanisms of resistant rice plants against virulent BPH, and may potentially guide the development of insect-resistant rice varieties.

Dissecting brown planthopper resistance genes in Oryza and its wild relatives: A review

Dissecting brown planthopper resistance genes in Oryza and its wild relatives: A review

Brown planthopper infestation on rice reduces plant susceptibility to Meloidogyne graminicola by reducing root sugar allocation.

Plants are simultaneously attacked by different pests that rely on sugars uptake from plants. An understanding of the role of plant sugar allocation in these multipartite interactions is limited. Here, we characterized the expression patterns of sucrose transporter genes and evaluated the impact of targeted transporter gene mutants and brown planthopper (BPH) phloem-feeding and oviposition on root sugar allocation and BPH-reduced rice susceptibility to Meloidogyne graminicola. We found that the sugar transporter genes OsSUT1 and OsSUT2 are induced at BPH oviposition sites. OsSUT2 mutants showed a higher resistance to gravid BPH than to nymph BPH, and this was correlated with callose deposition, as reflected in a different effect on M. graminicola infection. BPH phloem-feeding caused inhibition of callose deposition that was counteracted by BPH oviposition. Meanwhile, this pivotal role of sugar allocation in BPH-reduced rice susceptibility to M. graminicola was validated on rice cultivar RHT harbouring BPH resistance genes Bph3 and Bph17. In conclusion, we demonstrated that rice susceptibility to M. graminicola is regulated by BPH phloem-feeding and oviposition on rice through differences in plant sugar allocation.

Insecticide resistance triggers a reduction of virulence to host‐plant defenses in the brown planthopper

AbstractPlants produce various phytochemicals against herbivory, but phytophagous insects have encountered phytochemicals in the co‐evolutionary history between plants and insects. Selection pressure exerted by phytochemicals triggers a preadaptation to insecticide resistance in insect pests that is due to detoxification systems that are common to phytochemicals and insecticides in the insect's body. We investigated the interaction between the host plant resistance of rice cultivars and the brown planthopper, Nilaparvata lugens (Stål) (Hemiptera: Delphacidae). Forty brown planthopper resistance gene loci (BPHs) that are related to phytochemicals in various cultivars of rice inhibit feeding by N. lugens, but this planthopper has developed virulence to resistant rice cultivars possessing some genes. Nilaparvata lugens has also developed resistance to some insecticides as a rapid adaptation to human‐driven selection. We tested the hypothesis that the evolution of insects' resistance to an insecticide is promoted by their encounters with phytochemicals. We compared the virulence of imidacloprid‐resistant and control N. lugens strains toward seven rice cultivars that possess different genes, and we observed that the imidacloprid‐resistant N. lugens had reduced virulence to three rice cultivars, Rathu Heenati (BPH3, BPH17), Babawee (BPH4), and Balamawee (BPH27, three quantitative trait loci), meaning that the development of imidacloprid resistance has a negative impact on the virulence of N. lugens to three cultivars. Our results indicate trade‐offs rather than a co‐relationship between the evolution of insecticide resistance and encounters with host plant defense.

Cost-effective multiplex PCR assay for simultaneous detection of bacterial leaf blight, blast and brown planthopper resistance genes in rice

Cost-effective multiplex PCR assay for simultaneous detection of bacterial leaf blight, blast and brown planthopper resistance genes in rice

Molecular screening of local Indonesian rice to identified resistant varieties against brown planthopper (Nilaparvata lugens) attacks

Abstract. Puspito AN, Tigara MRN, Putra SID, Rozzita N, Ubaidillah M. 2023. Molecular screening of local Indonesian rice to identified resistant varieties against brown planthopper (Nilaparvata lugens) attacks. Biodiversitas 24: 5503-5512. Brown planthopper (Nilaparvata lugens Stal) is a significant pest in rice (Oryza sativa L.), resulting in a yield loss of around 20-80%. Environmentally friendly control involves looking for potential resistance in local Indonesian rice, because it’s naturally resistant to pests and diseases and has several tolerant mechanisms for dealing with stress. However, the resistance potential of local rice has not been widely studied, so it is necessary to carry out screening to identify the resistance possessed by local Indonesian rice and continue with molecular analysis to validate the presence of brown planthopper resistance genes. This study aimed to determine the possible resistance level of 24 Indonesian local rice varieties to brown planthopper pests. The research was conducted at the Agrotechnology Laboratory, Faculty of Agriculture, University of Jember. In June-November 2022. This research included screening using the third instar nymph brown planthopper, preference testing to analyze the preference level for each local rice variety and molecular analysis using six BPH markers (RM 247, RM 6869, RM 19291, g12140-2, RM 3331, and RM 5479) with the MAS technique. The results showed that in the preference test, Lahoten, Fatuk Masin, and Sukamandi had a higher preference value than other local Indonesian rice. In the screening, the average local rice with very resistant criteria is Leukat Medan, while those with moderately vulnerable criteria are Sukamandi. In the molecular analysis of local Indonesian rice, the Aek Sibundong variety had the most resistance, while the Kapuas and Sukamandi varieties had the least resistance.

Segregation of molecular markers associated with Bph3 gene in BC5F2 population derived from Ciherang rice variety as the recipient parent

Brown planthopper (BPH), an important insect pest of rice, can cause severe damage and significant yield loss. An efficient and environmentally friendly method to control this pest is by planting resistant varieties. The brown planthopper resistance gene Bph3 from Rathu Heenati variety is closely linked to the Waxy gene that regulates amylose synthesis, the primary determinant of rice eating and cooking quality. The purposes of this study were to analyze the segregation ratio of SSR markers associated with Bph3 gene and to identify individual plants carrying homozygous allele for Bph3 gene in a BC5F2 population derived from a backcross that used Ciherang as the recurrent recipient parent. Analyses using RM589, RM586, and RM588 markers linked to Bph3 gene and RM190 marker linked to the Waxy gene indicated that the ratio of genotype segregation for each marker related to Bph3 gene did not deviate from the expected ratio with the χ 2 value was 0.956, 0.587, and 1.467 for RM589, RM586, and RM588, respectively (χ2 table = 5.991, α=0,05). All individual plants had a homozygous allele from Ciherang for Waxy gene based on the RM190 marker. As many as 25 individual plants which have homozygous Bph3 allele from Rathu Heenati and homozygous Waxy allele from Ciherang can be further developed as promising BPH-resistant rice varieties with eating and cooking quality similar to Ciherang.

Recent Advances in Molecular Mechanism and Breeding Utilization of Brown Planthopper Resistance Genes in Rice: An Integrated Review.

Over half of the world's population relies on rice as their staple food. The brown planthopper (Nilaparvata lugens Stål, BPH) is a significant insect pest that leads to global reductions in rice yields. Breeding rice varieties that are resistant to BPH has been acknowledged as the most cost-effective and efficient strategy to mitigate BPH infestation. Consequently, the exploration of BPH-resistant genes in rice and the development of resistant rice varieties have become focal points of interest and research for breeders. In this review, we summarized the latest advancements in the localization, cloning, molecular mechanisms, and breeding of BPH-resistant rice. Currently, a total of 70 BPH-resistant gene loci have been identified in rice, 64 out of 70 genes/QTLs were mapped on chromosomes 1, 2, 3, 4, 6, 8, 10, 11, and 12, respectively, with 17 of them successfully cloned. These genes primarily encode five types of proteins: lectin receptor kinase (LecRK), coiled-coil-nucleotide-binding-leucine-rich repeat (CC-NB-LRR), B3-DNA binding domain, leucine-rich repeat domain (LRD), and short consensus repeat (SCR). Through mediating plant hormone signaling, calcium ion signaling, protein kinase cascade activation of cell proliferation, transcription factors, and miRNA signaling pathways, these genes induce the deposition of callose and cell wall thickening in rice tissues, ultimately leading to the inhibition of BPH feeding and the formation of resistance mechanisms against BPH damage. Furthermore, we discussed the applications of these resistance genes in the genetic improvement and breeding of rice. Functional studies of these insect-resistant genes and the elucidation of their network mechanisms establish a strong theoretical foundation for investigating the interaction between rice and BPH. Furthermore, they provide ample genetic resources and technical support for achieving sustainable BPH control and developing innovative insect resistance strategies.

Gene Validation for Brown Plant Hopper Resistance in Rice Varieties Using SSR Markers

The Brown Plant Hopper (BPH), Nilaparvata lugens (Homoptera: Delphacidae) is one of the most destructive insect pests causing significant yield loss in most of the rice cultivars of Asia. Marker-assisted backcrossing is used to introgress the genes for BPH resistance in which the selection of donor parents to confer durable resistance and validation of the presence of genes is a prerequisite. Jyothi the most popular, widely cultivated rice variety in Kerala is screened along with four parental lines viz., PTB33 (Variety released from RARS, Pattambi), IRRI introgressed lines- IR65482-7-216-1-2, IR7103-121-15-B, and a breeding line RP2068-13-5-8 for validating the presence of genes Bph3, BPH18, Bph20, and Bph21 using SSR markers. Parental polymorphism was shown for markers specific to Bph3, BPH18, and Bph20. Besides this, cluster analysis using the UPGMA method produced 4 clusters. The variety ‘PTB33’ was obtained in a separate cluster which can be attributed to its resistant character against BPH and can be considered as a potential donor. The IRRI introgressed lines- IR65482-7-216-1-2, IR7103-121-15-B, and the breeding line RP2068-13-5-8 can also be well utilized as donors by proper standardized BPH screening tests for confirming the phenotypic expression of BPH resistance.

Marker assisted pyramiding of major brown plant hopper resistance genes in an elite culture CBMAS14065

Marker assisted pyramiding of major brown plant hopper resistance genes in an elite culture CBMAS14065

The Bph45 Gene Confers Resistance against Brown Planthopper in Rice by Reducing the Production of Limonene.

Brown planthopper (BPH), a monophagous phloem feeder, consumes a large amount of photoassimilates in rice and causes wilting. A near-isogenic line 'TNG71-Bph45' was developed from the Oryza sativa japonica variety 'Tainung 71 (TNG71) carrying a dominant BPH-resistance locus derived from Oryza nivara (IRGC 102165) near the centromere of chromosome 4. We compared the NIL (TNG71-Bph45) and the recurrent parent to explore how the Bph45 gene confers BPH resistance. We found that TNG71-Bph45 is less attractive to BPH at least partially because it produces less limonene. Chiral analysis revealed that the major form of limonene in both rice lines was the L-form. However, both L- and D-limonene attracted BPH when applied exogenously to TNG71-Bph45 rice. The transcript amounts of limonene synthase were significantly higher in TNG71 than in TNG71-Bph45 and were induced by BPH infestation only in the former. Introgression of the Bph45 gene into another japonica variety, Tainan 11, also resulted in a low limonene content. Moreover, several dominantly acting BPH resistance genes introduced into the BPH-sensitive IR24 line compromised its limonene-producing ability and concurrently decreased its attractiveness to BPH. These observations suggest that reducing limonene production may be a common resistance strategy against BPH in rice.

Near-isogenic lines for resistance to brown planthopper with the genetic background of Indica Group elite rice (Oryza sativa L.) variety 'IR64'.

The brown planthopper (BPH), Nilaparvata lugens Stål, is an insect pest that severely damages rice (Oryza sativa L.) in Asia, causing huge yield loss. Use of resistant variety is a cost-effective and eco-friendly strategy for maintaining BPH populations below the economic injury level. However, current BPH populations have been changed to virulence against resistant varieties. In this study, to estimate effective combinations among eight BPH resistance genes (BPH32, BPH17-ptb, BPH20, BPH17, BPH3, BPH25, BPH26 and qBPH6), eight near-isogenic lines with the genetic background of an Indica Group rice variety 'IR64' (IR64-NIL) were developed using marker-assisted selection. The genome recoveries of these NILs ranged from 89.3% to 98.8% and agronomic traits of them were similar to those of 'IR64'. In modified seed box screening test, resistance level of IR64-NILs was higher than that of 'IR64'. In antibiosis test, high adult mortalities of BPH (from 56.0% to 97.0%) were observed among NILs, in comparison with that of 'IR64'. Among IR64-NILs, the line carrying BPH17 showed the highest resistance level at all tests. Thus, these IR64-NILs with multiple BPH resistance genes could be valuable breeding lines for enhancing resistance levels by gene pyramiding and multiline variety.

Development and characterization of near-isogenic lines for brown planthopper resistance genes in the genetic background of japonica rice 'Sagabiyori'.

The brown planthopper (BPH: Nilaparvata lugens Stål) is one of the most destructive insects in rice production. The use of host plant resistance has potential to reduce damage caused by BPH. The heat tolerance japonica rice 'Sagabiyori', with superior grain quality and high soluble starch in the stem, is highly susceptible to damage by BPH. Here, to enhance its BPH resistance, we developed seven near-isogenic lines (NILs) carrying BPH2, BPH17-ptb, BPH32, BPH3, BPH17, BPH20, and BPH21 through marker-assisted selection and evaluated resistance to two BPH populations. Most lines were more resistant to the Hadano-1966 BPH population than Sagabiyori but were less effective against the highly virulent Koshi-2013 population. Nevertheless, in antixenosis tests, Koshi-2013 settled less on all NILs than on Sagabiyori. In addition, adult mortality and the percentage of fresh weight loss of lines carrying BPH17 and BPH3 indicated that these lines have higher resistance to Koshi-2013 than Sagabiyori. Current study revealed that BPH resistance of Sagabiyori became stronger by transferring BPH3 and BPH17 genes. Thus, BPH3 and BPH17 might be valuable for breeding programs to enhance BPH resistance of high grain quality rice varieties with heat tolerance.

Development of pyramided lines carrying brown planthopper resistance genes in the genetic background of Indica Group rice (Oryza sativa L.) variety 'IR64'.

The development of resistant rice (Oryza sativa L.) varieties is a key strategy for the eco-friendly control of brown planthopper (BPH: Nilaparvata lugens Stål). However, BPH outbreaks occur frequently owing to the evolution of virulent strains in the field and the rapid breakdown of monogenic resistance to BPH. Therefore, to enhance BPH resistance and gauge the effectiveness of gene pyramiding against strongly virulent BPH, we developed pyramided lines (PYLs) in the genetic background of 'IR64' carrying BPH resistance genes. We developed six IR64-PYLs (BPH3 + BPH17, BPH32 + BPH17, BPH32 + BPH20, BPH3 + BPH17-ptb, BPH20 + BPH3, and BPH17-ptb + BPH32) through marker-assisted selection. To assess the resistance of the IR64-PYLs, we conducted antibiosis test, honeydew test, and modified seedbox screening test (MSST) using strongly virulent BPH populations. The level of BPH resistance increased in all six IR64-PYLs compared to both 'IR64' and the corresponding NILs in MSST. Among them, IR64-BPH3 + BPH17 and IR64-BPH32 + BPH17 exhibited the highest resistance to BPH. However, the resistance level of most IR64-PYLs was not significantly higher than that of the corresponding NILs in antibiosis test. Thus, these PYLs could serve as a valuable resource for breeding programs aimed at improving resistance to virulent strains of BPH and enhancing their durability.

Identification of two QTLs, BPH41 and BPH42, and their respective gene candidates for brown planthopper resistance in rice

The brown planthopper (BPH) is the leading cause of insect damage to rice plants and BPH infestations have caused profound losses in rice production since the 1970’s. There is an urgent need to discover new BPH resistance genes to ensure the successful production of rice. Here, a new BPH resistance source provided by SeedWorks International Pvt. Ltd., SWD10, was used for this purpose. QTL mapping using 232 F2 progenies and 216 polymorphic markers revealed two dominant BPH resistance QTLs, BPH41 and BPH42, located on chromosome 4. BPH resistance mechanism test revealed that antibiosis and antixenosis mechanisms both play a role in BPH resistance conferred by these two QTLs. The QTLs were delimited between markers SWRm_01617 and SWRm_01522 for BPH41, and SWRm_01695 and SWRm_00328 for BPH42. Additionally, using RNA-seq data of lines containing the resistant QTLs, we shortlisted four and three gene candidates for BPH41 and BPH42, respectively. Differential gene expression analysis of lines containing the QTLs suggested that SWD10 BPH resistance is contributed by the plant’s innate immunity and the candidate genes may be part of the rice innate immunity pathway. Currently, the newly identified QTLs are being utilized for breeding BPH resistant rice varieties and hybrids.

Progress in exploitation and utilization of brown planthopper resistance gene in rice

<p indent="0mm">Rice is the most important food crop globally and a model species for basic biological research. Brown planthopper (BPH) is one of the major insect pests of rice. In the past decades, scientists have explored the BPH resistance gene from rice germplasm and revealed the molecular mechanism underlying the host plant resistance of rice to BPH. Research results have promoted the development of BPH-resistant rice varieties and their release in rice production. This review briefly introduces the research progress on brown planthopper resistance gene discovery, mechanism analysis, germplasm innovation, and utilization in rice breeding programs to help readers understand the mystery of plant resistance against insects and the practical significance of insect resistance research in plants.