Bridge Ontology Research Articles

Bridge Deterioration Knowledge Ontology for Supporting Bridge Document Analytics

Bridge owners possess important data sources, such as bridge construction records and inspection and maintenance reports, which hold great promise for improving understanding of bridge deterioration and informing maintenance decision making. However, the valuable data buried in these documents are not being fully exploited due to their unstructured nature. Domain-specific semantics are needed to facilitate analysis of the data based on content and domain-specific meaning and to bridge terminology gaps across different sources. To address this need, this paper proposes a bridge ontology (BridgeOnto) that captures deterioration knowledge and semantics related to bridge elements, deficiencies, deficiency causes, and maintenance actions. The proposed ontology was evaluated through answering competency questions, automated consistency and redundancy checking, expert interviews, and application-oriented validation. The BridgeOnto was implemented in supporting automated extraction of information describing bridge conditions and maintenance actions from bridge inspection reports. The experimental results show that the ontology was able to improve information extraction precision, recall, and F-1 measure by 11.7%, 12.4%, and 12.0%, on average. This research contributes to the body of knowledge by offering an ontology that can capture the key deterioration knowledge areas with sufficient coverage and in-depth classification for achieving adequate support for bridge document analytics. By allowing better access to and use of crucial textual data, this research has the potential to improve the understanding of bridge deterioration and enhance maintenance decisions.

An Alignment-Based Implementation of a Holistic Ontology Integration Method

Despite the intense research activity in the last two decades, ontology integration still presents a number of challenging issues. As ontologies are continuously growing in number, complexity and size and are adopted within open distributed systems such as the Semantic Web, integration becomes a central problem and has to be addressed in a context of increasing scale and heterogeneity. In this paper, we describe a holistic alignment-based method for customized ontology integration. The holistic approach proposes additional challenges as multiple ontologies are jointly integrated at once, in contrast to most common approaches that perform an incremental pairwise ontology integration. By applying consolidated techniques for ontology matching, we investigate the impact on the resulting ontology. The proposed method takes multiple ontologies as well as pairwise alignments and returns a refactored/non-refactored integrated ontology that faithfully preserves the original knowledge of the input ontologies and alignments. We have tested the method on large biomedical ontologies from the LargeBio OAEI track. Results show effectiveness, and overall, a decreased integration cost over multiple ontologies.•OIAR and AROM are two implementations of the proposed method.•OIAR creates a bridge ontology, and AROM creates a fully merged ontology.•The implementation includes the option of ontology refactoring.

Enhancing life cycle chemical exposure assessment through ontology modeling

In its 2014 report, A Framework Guide for the Selection of Chemical Alternatives, the National Academy of Sciences placed increased emphasis on comparative exposure assessment throughout the life cycle (i.e., from manufacturing to end-of-life) of a chemical. The inclusion of the full life cycle greatly increases the data demands for exposure assessments, including both the quantity and type of data. High throughput tools for exposure estimation add to this challenge by requiring rapid accessibility to data. In this work, ontology modeling was used to bridge the domains of exposure modeling and life cycle inventory modeling to facilitate data sharing and integration. The exposure ontology, ExO, is extended to describe human exposure to consumer products, while an inventory modeling ontology, LciO, is formulated to support automated data mining. The core ontology pieces are connected using a bridging ontology and discussed through a theoretical example to demonstrate how data from LCA can be leveraged to support rapid exposure modeling within a life cycle context.

A semantic interoperability approach to health-care data: Resolving data-level conflicts

The integration of data from various electronic health record EHR systems presents a critical conflict in the sharing and exchanging of patient information across a diverse group of health-oriented organizations. Patient health records in each system are annotated with ontologies utilizing different health-care standards, creating ontology conflicts both at the schema and data levels. In this study, we introduce the concept of semantic ontology mapping for the facilitation and interoperability of heterogeneous EHR systems. This approach proposes a means of detecting and resolving the data-level conflicts that generally exist in the ontology mapping process. We have extended the semantic bridge ontology in support of ontology mapping at the data level and generated the required mapping rules to reconcile data from different ontological sources into a canonical format. As a result, linked-patient data are generated and made available in a semantic query engine to facilitate user queries of patient data across heterogeneous EHR systems.

Interoperable cross-domain semantic and geospatial framework for automatic change detection

With the increasingly diverse types of geospatial data established over the last few decades, semantic interoperability in integrated applications has attracted much interest in the field of Geographic Information System (GIS). This paper proposes a new strategy and framework to process cross-domain geodata at the semantic level. This framework leverages the semantic equivalence of concepts between domains through bridge ontology and facilitates the integrated use of different domain data, which has been long considered as an essential superiority of GIS, but is impeded by the lack of understanding about the semantics implicitly hidden in the data. We choose the task of change detection to demonstrate how the introduction of ontology concept can effectively make the integration possible. We analyze the common properties of geodata and change detection factors, then construct rules and summarize possible change scenario for making final decisions. The use of topographic map data to detect changes in land use shows promising success, as far as the improvement of efficiency and level of automation is concerned. We believe the ontology-oriented approach will enable a new way for data integration across different domains from the perspective of semantic interoperability, and even open a new dimensionality for the future GIS.

A semi-automatic lightweight ontology bridging for the semantic integration of cross-domain geospatial information

Semantic integration has gained considerable attention in geographic information system (GIS) interoperability with the goal of conquering semantic heterogeneity. Over the past two decades, ontology engineering has been widely used to resolve semantic integration obstacles. However, most of the previous ontology integration approaches mainly focused on the same type of data with formal ontology. A key challenge is to identify the semantics of cross-domain data generated by different domains from their own perspectives. Given that formal ontology is not always available, this paper proposes a novel semi-automatic approach to determine the semantic relationship of cross-domain concepts based on lightweight ontologies. The semantics of each concept is presented by an extendable and structural definition framework composed of a number of resource description framework triple statements formed by common vocabularies extracted from the free-text definition of the concept. We further propose algorithms to compare the structural definition of concepts and to determine the semantic relationship of concepts between different domains. Finally, the semantic relationship of concepts from different domains is formally presented by the bridge ontology to serve future application needs. The bridge ontology of two GIS-based data, topographic map data and land use data, was developed to demonstrate the feasibility of the proposed approach. The preliminary result shows a faithful and highly automatic semantic integration for cross-domain data.

Object-oriented and ontology-alignment patterns-based expressive Mediation Bridge Ontology (MBO)

The Semantic Web is dependent on extensive knowledge management by interlinking resources on the web using matching techniques. This role is played by the progressing domain of ontology matching, by introducing ontology-matching tools. The focus of these matching tools is limited to matching techniques and automation, rather than expressive formal representation of alignments. We propose Mediation Bridge Ontology (MBO), an expressive alignment representation ontology used to store correspondences between matching ontologies matched by our ontology-matching tool, System for Parallel Heterogeneity Resolution (SPHeRe). The MBO utilizes object-oriented design patterns and the proposed ontology-alignment design patterns to provide extendibility and reusability factors to SPHeRe system. We compared our proposed system with existing systems using Coupling Factor, Number of Polymorphic methods and Rate of Change metrics to support extendibility and reusability. These factors contribute to the overall objective of interoperability for knowledge management in the Semantic Web.

An adaptive semantic based mediation system for data interoperability among Health Information Systems.

Heterogeneity in the management of the complex medical data, obstructs the attainment of data level interoperability among Health Information Systems (HIS). This diversity is dependent on the compliance of HISs with different healthcare standards. Its solution demands a mediation system for the accurate interpretation of data in different heterogeneous formats for achieving data interoperability. We propose an adaptive AdapteR Interoperability ENgine mediation system called ARIEN, that arbitrates between HISs compliant to different healthcare standards for accurate and seamless information exchange to achieve data interoperability. ARIEN stores the semantic mapping information between different standards in the Mediation Bridge Ontology (MBO) using ontology matching techniques. These mappings are provided by our System for Parallel Heterogeneity (SPHeRe) matching system and Personalized-Detailed Clinical Model (P-DCM) approach to guarantee accuracy of mappings. The realization of the effectiveness of the mappings stored in the MBO is evaluation of the accuracy in transformation process among different standard formats. We evaluated our proposed system with the transformation process of medical records between Clinical Document Architecture (CDA) and Virtual Medical Record (vMR) standards. The transformation process achieved over 90 % of accuracy level in conversion process between CDA and vMR standards using pattern oriented approach from the MBO. The proposed mediation system improves the overall communication process between HISs. It provides an accurate and seamless medical information exchange to ensure data interoperability and timely healthcare services to patients.

Semantic Ontology Mapping for Interoperability of Learning Resource Systems using a rule-based reasoning approach

There is an increasing demand for sharing learning resources between existing learning resource systems to support reusability, exchangeability, and adaptability. The learning resources need to be annotated with ontologies into learning objects that use different metadata standards. These ontologies have introduced the problems of semantic and structural heterogeneity. This research proposes a Semantic Ontology Mapping for Interoperability of Learning Resource Systems. To enable semantic ontology mapping, this research proposes conflict detection and resolution techniques for both semantic and structural conflicts. The Semantic Bridge Ontology has been proposed as a core component for generating mapping rules to reconcile terms defined in local ontologies into terms defined in the target common ontology. This work defines the reasoning rules to classify related learning objects to enhance the powerful deductive reasoning capabilities of the system. As a consequence, ontology-based learning object metadata are generated and used by the semantic query engine to facilitate user queries of learning objects across heterogeneous learning resource systems.

Using views of Systems Biology Cloud: application for model building

A large and growing network ("cloud") of interlinked terms and records of items of Systems Biology knowledge is available from the web. These items include pathways, reactions, substances, literature references, organisms, and anatomy, all described in different data sets. Here, we discuss how the knowledge from the cloud can be molded into representations (views) useful for data visualization and modeling. We discuss methods to create and use various views relevant for visualization, modeling, and model annotations, while hiding irrelevant details without unacceptable loss or distortion. We show that views are compatible with understanding substances and processes as sets of microscopic compounds and events respectively, which allows the representation of specializations and generalizations as subsets and supersets respectively. We explain how these methods can be implemented based on the bridging ontology Systems Biological Pathway Exchange (SBPAX) in the Systems Biology Linker (SyBiL) we have developed.

From Web Data to Visualization via Ontology Mapping

AbstractIn this paper, we propose a novel approach for automatic generation of visualizations from domain‐specific data available on the web. We describe a general system pipeline that combines ontology mapping and probabilistic reasoning techniques. With this approach, a web page is first mapped to a Domain Ontology, which stores the semantics of a specific subject domain (e.g., music charts). The Domain Ontology is then mapped to one or more Visual Representation Ontologies, each of which captures the semantics of a visualization style (e.g., tree maps). To enable the mapping between these two ontologies, we establish a Semantic Bridging Ontology, which specifies the appropriateness of each semantic bridge. Finally each Visual Representation Ontology is mapped to a visualization using an external visualization toolkit. Using this approach, we have developed a prototype software tool, SemViz, as a realisation of this approach. By interfacing its Visual Representation Ontologies with public domain software such as ILOG Discovery and Prefuse, SemViz is able to generate appropriate visualizations automatically from a large collection of popular web pages for music charts without prior knowledge of these web pages.

Bridge ontology: A multi-ontologies-based approach for semantic annotation

Representing the relationships between ontologies is the key problem of semantic annotations based on multi-ontologies. Traditional approaches only had the ability of denoting the simple concept subsumption relations between ontologies. Through analyzing and classifying the relationships between ontologies, the idea of bridge ontology was proposed, which had the powerful capability of expressing the complex relationships between concepts and relationships between relations in multi-ontologies. Meanwhile, a new approach employing bridge ontology was proposed to deal with the multi-ontologies-based semantic annotation problem. The bridge ontology is a peculiar ontology, which can be created and maintained conveniently, and is effective in the multi-ontologies-based semantic annotation. The approach using bridge ontology has the advantages of low-cost, scalable, robust in the web circumstance, and avoiding the unnecessary ontology extending and integration.