Brain MRI Segmentation Research Articles

Evaluation of registration-based vs. manual segmentation of rhesus macaque brain MRIs.

With increasing numbers of magnetic resonance imaging (MRI) datasets becoming publicly available, researchers and clinicians alike have turned to automated methods of segmentation to enable population-level analyses of these data. Although prior research has evaluated the extent to which automated methods recapitulate "gold standard" manual segmentation methods in the human brain, such an evaluation has not yet been carried out for segmentation of MRIs of the macaque brain. Macaques offer the important opportunity to bridge gaps between microanatomical studies using invasive methods like tract tracing, neural recordings, and high-resolution histology and non-invasive macroanatomical studies using methods like MRI. As such, it is important to evaluate whether automated tools derive data of sufficient quality from macaque MRIs to bridge these gaps. We tested the relationship between automated registration-based segmentation using an open source and actively maintained NHP imaging analysis pipeline (AFNI) and gold standard manual segmentation of 4 structures (2 cortical: anterior cingulate cortex and insula; 2 subcortical: amygdala and caudate) across 37 rhesus macaques (Macaca mulatta). We identified some variability in the strength of correlation between automated and manual segmentations across neural regions and differences in relationships with demographic variables like age and sex between the two techniques.

Comprehensive segmentation of gray matter structures on T1-weighted brain MRI: A Comparative Study of CNN, CNN hybrid-transformer or -Mamba architectures.

Recent advances in deep learning have shown promising results in medical image analysis and segmentation. However, most brain MRI segmentation models are limited by the size of their datasets and/or the number of structures they can identify. This study evaluates the performance of six advanced deep learning models in segmenting 122 brain structures from T1-weighted MRI scans, aiming to identify the most effective model for clinical and research applications. 1,510 T1-weighted MRIs were used to compare six deep-learning models for the segmentation of 122 distinct gray matter structures: nnU-Net, SegResNet, SwinUNETR, UNETR, U-Mamba_BOT and U-Mamba_ Enc. Each model was rigorously tested for accuracy using the Dice Similarity Coefficient (DSC) and the 95th percentile Hausdorff Distance (HD95). Additionally, the volume of each structure was calculated and compared between normal control (NC) and Alzheimer's Disease (AD) patients. U-Mamba_Bot achieved the highest performance with a median DSC of 0.9112 [IQR:0.8957, 0.9250]. nnU-Net achieved a median DSC of 0.9027 [IQR: 0.8847, 0.9205] and had the highest HD95 of 1.392[IQR: 1.174, 2.029]. The value of each HD95 (<3mm) indicates its superior capability in capturing detailed brain structures accurately. Following segmentation, volume calculations were performed, and the resultant volumes of normal controls and AD patients were compared. The volume changes observed in thirteen brain substructures were all consistent with those reported in existing literature, reinforcing the reliability of the segmentation outputs. This study underscores the efficacy of U-Mamba_Bot as a robust tool for detailed brain structure segmentation in T1-weighted MRI scans. The congruence of our volumetric analysis with the literature further validates the potential of advanced deep-learning models to enhance the understanding of neurodegenerative diseases such as AD. Future research should consider larger datasets to validate these findings further and explore the applicability of these models in other neurological conditions. AD = Alzheimer's Disease; ADNI = Alzheimer's Disease Neuroimaging Initiative; DSC = Dice Similarity Coefficient; HD95 = the 95th Percentile Hausdorff Distance; IQR = Interquartile Range; NC = Normal Control; SSMs = State-space Sequence Models.

A next-generation, histological atlas of the human brain and its application to automated brain MRI segmentation.

Magnetic resonance imaging (MRI) is the standard tool to image the human brain in vivo. In this domain, digital brain atlases are essential for subject-specific segmentation of anatomical regions of interest (ROIs) and spatial comparison of neuroanatomy from different subjects in a common coordinate frame. High-resolution, digital atlases derived from histology (e.g., Allen atlas [7], BigBrain [13], Julich [15]), are currently the state of the art and provide exquisite 3D cytoarchitectural maps, but lack probabilistic labels throughout the whole brain. Here we present NextBrain, a next-generation probabilistic atlas of human brain anatomy built from serial 3D histology and corresponding highly granular delineations of five whole brain hemispheres. We developed AI techniques to align and reconstruct ~10,000 histological sections into coherent 3D volumes with joint geometric constraints (no overlap or gaps between sections), as well as to semi-automatically trace the boundaries of 333 distinct anatomical ROIs on all these sections. Comprehensive delineation on multiple cases enabled us to build the first probabilistic histological atlas of the whole human brain. Further, we created a companion Bayesian tool for automated segmentation of the 333 ROIs in any in vivo or ex vivo brain MRI scan using the NextBrain atlas. We showcase two applications of the atlas: automated segmentation of ultra-high-resolution ex vivo MRI and volumetric analysis of Alzheimer's disease and healthy brain ageing based on ~4,000 publicly available in vivo MRI scans. We publicly release: the raw and aligned data (including an online visualisation tool); the probabilistic atlas; the segmentation tool; and ground truth delineations for a 100 μm isotropic ex vivo hemisphere (that we use for quantitative evaluation of our segmentation method in this paper). By enabling researchers worldwide to analyse brain MRI scans at a superior level of granularity without manual effort or highly specific neuroanatomical knowledge, NextBrain holds promise to increase the specificity of MRI findings and ultimately accelerate our quest to understand the human brain in health and disease.

Efficient segmentation of fetal brain MRI based on the physical resolution.

The image resolution of fetal brain magnetic resonance imaging (MRI) is a critical factor in brain development measures, which is mainly determined by the physical resolution configured in the MRI sequence. However, fetal brain MRI are commonly reconstructed to 3D images with a higher apparent resolution, compared to the original physical resolution. This work is to demonstrate that accurate segmentation can be achieved based on the MRI physical resolution, and the high apparent resolution segmentation can be achieved by a simple deep learning module. This retrospective study included 150 adult and 80 fetal brain MRIs. The adult brain MRIs were acquired at a high physical resolution, which were downsampled to visualize and quantify its impacts on the segmentation accuracy. The physical resolution of fetal images was estimated based on MRI acquisition settings and the images were downsampled accordingly before segmentation and restored using multiple upsampling strategies. Segmentation accuracy of ConvNet models were evaluated on the original and downsampled images. Dice coefficients were calculated, and compared to the original data. When the apparent resolution was higher than the physical resolution, the accuracy of fetal brain segmentation had negligible degradation (accuracy reduced by 0.26%, 1.1%, and 1.8% with downsampling factors of 4/3, 2, and 4 in each dimension, without significant differences from the original data). Using a downsampling factor of 4 in each dimension, the proposed method provided 7× smaller and 10× faster models. Efficient and accurate fetal brain segmentation models can be developed based on the physical resolution of MRI acquisitions.

VINNA for Neonates – Orientation Independence through Latent Augmentations

Abstract A robust, fast, and accurate segmentation of neonatal brain images is highly desired to better understand and detect changes during development and disease, specifically considering the rise in imaging studies for this cohort. Yet, the limited availability of ground truth datasets, lack of standardized acquisition protocols, and wide variations of head positioning in the scanner pose challenges for method development. A few automated image analysis pipelines exist for newborn brain MRI segmentation, but they often rely on time-consuming non-linear spatial registration procedures and require resampling to a common resolution, subject to loss of information due to interpolation and down-sampling. Without registration and image resampling, variations with respect to head positions and voxel resolutions have to be addressed differently. In deep-learning, external augmentations such as rotation, translation, and scaling are traditionally used to artificially expand the representation of spatial variability, which subsequently increases both the training dataset size and robustness. However, these transformations in the image space still require resampling, reducing accuracy specifically in the context of label interpolation. We recently introduced the concept of resolution-independence with the Voxel-size Independent Neural Network framework, VINN. Here, we extend this concept by additionally shifting all rigid-transforms into the network architecture with a four degree of freedom (4-DOF) transform module, enabling resolution-aware internal augmentations (VINNA) for deep learning. In this work we show that VINNA (i) significantly outperforms state-of-the-art external augmentation approaches, (ii) effectively addresses the head variations present specifically in newborn datasets, and (iii) retains high segmentation accuracy across a range of resolutions (0.5-1.0mm). Furthermore, the 4-DOF transform module together with internal augmentations is a powerful, general approach to implement spatial augmentation without requiring image or label interpolation. The specific network application to newborns will be made publicly available as VINNA4neonates.

Enhanced Postoperative Brain MRI Segmentation with Automated Skull Removal and Resection Cavity Analysis

Enhanced Postoperative Brain MRI Segmentation with Automated Skull Removal and Resection Cavity Analysis

An Intuitionistic Fuzzy C-Means and Local Information-Based DCT Filtering for Fast Brain MRI Segmentation.

Structural and photometric anomalies in the brain magnetic resonance images (MRIs) affect the segmentation performance. Moreover, a sudden change in intensity between two boundaries of the brain tissues makes it prone to data uncertainty, resulting in the misclassification of the pixels lying near the cluster boundaries. The discrete cosine transform (DCT) domain-based filtering is an effective way to deal with structural and photometric anomalies, while the intuitionistic fuzzy C-means (IFCM) clustering can handle the uncertainty using the intuitionistic fuzzy set (IFS) theory. In this background, we propose two novel approaches, namely, the DCT-based intuitionistic fuzzy C-means (DCT-IFCM) and the DCT-based local information IFCM (DCT-LIFCM), which effectively deal with the Rician and Gaussian noises and also handle the data uncertainty problem to provide high segmentation accuracy. The DCT-IFCM approach performs the histogram-based segmentation, while the DCT-LIFCM uses the pixel-wise computation to include the spatial information. Although the DCT-LIFCM delivers slightly better performance than the DCT-IFCM, the latter is very fast in providing equally high segmentation accuracy. An exhaustive performance analysis is provided to demonstrate the superior performance of the proposed algorithms compared with the state-of-the-art algorithms, including those based on the DCT-based filtering approach and the IFS theory.

Comprehensive analysis of synthetic learning applied to neonatal brain MRI segmentation.

Brain segmentation from neonatal MRI images is a very challenging task due to large changes in the shape of cerebral structures and variations in signal intensities reflecting the gestational process. In this context, there is a clear need for segmentation techniques that are robust to variations in image contrast and to the spatial configuration of anatomical structures. In this work, we evaluate the potential of synthetic learning, a contrast-independent model trained using synthetic images generated from the ground truth labels of very few subjects. We base our experiments on the dataset released by the developmental Human Connectome Project, for which high-quality images are available for more than 700 babies aged between 26 and 45 weeks postconception. First, we confirm the impressive performance of a standard UNet trained on a few volumes, but also confirm that such models learn intensity-related features specific to the training domain. We then confirm the robustness of the synthetic learning approach to variations in image contrast. However, we observe a clear influence of the age of the baby on the predictions. We improve the performance of this model by enriching the synthetic training set with realistic motion artifacts and over-segmentation of the white matter. Based on extensive visual assessment, we argue that the better performance of the model trained on real T2w data may be due to systematic errors in the ground truth. We propose an original experiment allowing us to show that learning from real data will reproduce any systematic bias affecting the training set, while synthetic models can avoid this limitation. Overall, our experiments confirm that synthetic learning is an effective solution for segmenting neonatal brain MRI. Our adapted synthetic learning approach combines key features that will be instrumental for large multisite studies and clinical applications.

Automatic design of W-operators using membership functions: a case study in brain MRI segmentation

A W-operator is an image transformation that is locally defined inside a window W, invariant to translations. The automatic design of the W-operators consists of the design of functions, whose domain is a set of patterns or vectors obtained by translating a window through training images and the output of each vector is a class or label. The main difficulty to consider when designing W-operators is the generalization problem that occurs due to lack of training images. In this work, we propose the use of membership functions to solve the generalization problem in gray level images. Membership functions are defined from the training images to model regions that are often inaccurate due to ambiguous gray levels in the images. This proposal was applied to brain magnetic resonance image segmentation to test its performance in a field of interest in biomedical images. The experiments were carried out with different numbers of training and test images, windows sizes of 3×3\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$3\ imes 3$$\\end{document}, 5×5\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$5\ imes 5$$\\end{document}, 7×7\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$7\ imes 7$$\\end{document}, 11×11\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$11\ imes 11$$\\end{document}, and 15×15\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$15\ imes 15$$\\end{document}, and images with noise levels at 0, 1, 3, 5, 7, and 9%\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\%$$\\end{document}. To calculate the performance of each designed W-operator, the classification error, sensitivity, and specificity were used. From the experimental results, it was concluded that the best performance is achieved with a window of size 3×3\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$3\ imes 3$$\\end{document}. In images with noise levels from 1 to 5%\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\%$$\\end{document}, the classification error is less than 4%\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\%$$\\end{document} and the sensitivity and specificity are greater than 94 and 98%\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\%$$\\end{document}, respectively.

A review of self-supervised, generative, and few-shot deep learning methods for data-limited magnetic resonance imaging segmentation.

Magnetic resonance imaging (MRI) is a ubiquitous medical imaging technology with applications in disease diagnostics, intervention, and treatment planning. Accurate MRI segmentation is critical for diagnosing abnormalities, monitoring diseases, and deciding on a course of treatment. With the advent of advanced deep learning frameworks, fully automated and accurate MRI segmentation is advancing. Traditional supervised deep learning techniques have advanced tremendously, reaching clinical-level accuracy in the field of segmentation. However, these algorithms still require a large amount of annotated data, which is oftentimes unavailable or impractical. One way to circumvent this issue is to utilize algorithms that exploit a limited amount of labeled data. This paper aims to review such state-of-the-art algorithms that use a limited number of annotated samples. We explain the fundamental principles of self-supervised learning, generative models, few-shot learning, and semi-supervised learning and summarize their applications in cardiac, abdomen, and brain MRI segmentation. Throughout this review, we highlight algorithms that can be employed based on the quantity of annotated data available. We also present a comprehensive list of notable publicly available MRI segmentation datasets. To conclude, we discuss possible future directions of the field-including emerging algorithms, such as contrastive language-image pretraining, and potential combinations across the methods discussed-that can further increase the efficacy of image segmentation with limited labels.

A Comprehensive Brain MRI Image Segmentation System Based on Contourlet Transform and Deep Neural Networks

Brain tumors are one of the deadliest types of cancer. Rapid and accurate identification of brain tumors, followed by appropriate surgical intervention or chemotherapy, increases the probability of survival. Accurate determination of brain tumors in MRI scans determines the exact location of surgical intervention or chemotherapy. However, this accurate segmentation of brain tumors, due to their diverse morphologies in MRI scans, poses challenges that require significant expertise and accuracy in image interpretation. Despite significant advances in this field, there are several barriers to proper data collection, particularly in the medical sciences, due to concerns about the confidentiality of patient information. However, research papers for learning systems and proposed networks often rely on standardized datasets because a specific approach is unavailable. This system combines unsupervised learning in the adversarial generative network component with supervised learning in segmentation networks. The system is fully automated and can be applied to tumor segmentation on various datasets, including those with sparse data. In order to improve the learning process, the brain MRI segmentation network is trained using a generative adversarial network to increase the number of images. The U-Net model was employed during the segmentation step to combine the remaining blocks efficiently. Contourlet transform produces the ground truth for each MRI image obtained from the adversarial generator network and the original images in the processing and mask preparation phase. On the part of the adversarial generator network, high-quality images are produced, the results of which are similar to the histogram of the original images. Finally, this system improves the image segmentation performance by combining the remaining blocks with the U-net network. Segmentation is evaluated using brain magnetic resonance images obtained from Istanbul Medipol Hospital. The results show that the proposed method and image segmentation network, which incorporates several criteria, such as the DICE criterion of 0.9434, can be effectively used in any dataset as a fully automatic system for segmenting different brain MRI images.

Post-Operative Brain MRI Resection Cavity Segmentation Model and Follow-Up Treatment Assistance

Post-operative brain magnetic resonance imaging (MRI) segmentation is inherently challenging due to the diverse patterns in brain tissue, which makes it difficult to accurately identify resected areas. Therefore, there is a crucial need for a precise segmentation model. Due to the scarcity of post-operative brain MRI scans, it is not feasible to use complex models that require a large amount of training data. This paper introduces an innovative approach for accurately segmenting and quantifying post-operative brain resection cavities in MRI scans. The proposed model, named Attention-Enhanced VGG-U-Net, integrates VGG16 initial weights in the encoder section and incorporates a self-attention module in the decoder, offering improved accuracy for postoperative brain MRI segmentation. The attention mechanism enhances its accuracy by concentrating on a specific area of interest. The VGG16 model is comparatively lightweight, has pre-trained weights, and allows the model to extract incredibly detailed information from the input. The model is trained on publicly available post-operative brain MRI data and achieved a Dice coefficient value of 0.893. The model is then assessed using a clinical dataset of postoperative brain MRIs. The model facilitates the quantification of the resected regions and enables comparisons with each brain region based on pre-operative images. The capabilities of the model assist radiologists in evaluating surgical success and directing follow-up procedures.

Single brain metastases - prognostic factors and impact of residual tumor burden on overall survival.

Brain metastases (BM) are a common and challenging issue, with their incidence on the rise due to advancements in systemic therapies and increased patient survival. Most patients present with single BM, some of them without any further extracranial metastasis (i.e., solitary BM). The significance of postoperative intracranial tumor volume in the treatment of singular and solitary BM is still debated. This study aimed to determine the impact of resection and postoperative tumor burden on overall survival (OS) in patients with single BM. Patients with surgically treated single BM between 04/2007-01/2020 were retrospectively included. Residual tumor burden (RTB) was determined by manual segmentation of early postoperative brain MRI (72 h). Survival analyses were performed using Kaplan-Meier estimates for univariate analysis and Cox regression proportional hazards model for multivariate analysis, using preoperative Karnofsky performance status scale (KPSS), age, sex, RTB, incomplete resection and singular/solitary BM as covariates. 340 patients were included, median age 64 years (54-71). 119 patients (35%) had solitary BM, 221 (65%) singular BM. Complete resection (RTB=0) was achieved in 73%, median preoperative tumor burden was 11.2 cm3 (5-25), and RTB 0 cm3 (0-0.2). Median OS of patients with singular BM was 13 months (4-33) vs 20 months (5-92) for solitary BM; p=0.062. Multivariate analysis revealed singular BM as independent risk factor for poorer OS: HR 1.840 (1.202-2.817), p=0.005. Complete vs. incomplete resection showed no significant OS difference (13 vs. 13 months, p=0.737). When focusing on solitary BM, complete resection led to a longer OS than incomplete resection (21 vs. 8 months), without statistical significance(p=0.250). Achieving RTB=0 resulted in higher OS for patients with solitary BM compared to singular BM (21 vs. 12 months, p=0.027). Patients who received postoperative radiotherapy (RT) had significantly longer OS compared to those without it (14 vs. 4 months, p<0.001), with favorable OS in those receiving stereotactic radiosurgery (SRS) (15 months (3-42), p<0.001) or hypofractionated stereotactic radiotherapy (HSRT). When complete intracranial tumor resection RTB=0 is achieved, patients with solitary BM have a favorable outcome compared to singular BM. Singular BM was confirmed as independent risk factor. There is a strong presumption that complete resection leads to an improved oncological prognosis. Patients with solitary BM tend to benefit with a favorable outcome following complete resection. Hence, surgical resection should be considered as a treatment option for patients presenting with either no or minimal extracranial disease. Furthermore, the highly favorable impact of postoperative RT on OS was demonstrated and confirmed, especially with SRS or HSRT.

Brain magnetic resonance images segmentation via improved mixtures of factor analyzers based on dynamic co-clustering

The main goal of this paper is to attain accurate and automatic detection of brain tumors in gray magnetic resonance images using reducing the local dimensions. We propose a novel model called Improved Mixtures of Factor Analyzers based on Dynamic Co-Clustering (IMFADCC) for the detection and localization of brain tumors. After image preprocessing and enhancement, the optimal numbers of row clusters and column clusters corresponding to each row cluster, alongside other model parameters, are determined concurrently based on the size of the tumor by our model. Then, using the optimal values obtained, the image is co-clustered by simultaneously clustering rows and columns until the block containing the tumor is identified. The output image is divided into a certain number of blocks, one of which contains the tumor. For post-processing, the identified block is binarized using minimum error thresholding. The proposed model accurately detects and locates the block binarized within the original image while considering the remainder of the image as background. The effectiveness of the proposed method was assessed by evaluating its accuracy, Dice, intersection on union, geometric mean, receiver operating characteristic curve, specificity, and sensitivity criteria on the BraTS2018, BraTS2019, and BraTS2020 datasets. The results show that our method has significant performance and is highly accurate in detecting tumors of different sizes in complex and high-size images. Moreover, our method outperforms the existing diagnostic methods.

Segmentation of brain MRI using moth-flame optimization with modified cross entropy based fitness function

Segmentation of brain MRI using moth-flame optimization with modified cross entropy based fitness function

Based on neural network cascade abnormal texture information dissemination of classification of patients with schizophrenia and depression

This study used MRI brain image segmentation to identify novel magnetic resonance imaging (MRI) biomarkers to distinguish patients with schizophrenia (SCZ), major depressive disorder (MD), and healthy control (HC). Brain texture measurements, including entropy and contrast, were calculated to capture variability in adjacent MRI voxel intensity. These measures are then applied to group classification in deep learning techniques and combined with hierarchical correlations to locate results. Texture feature maps were extracted from segmented brain MRI scans of 141 patients with schizophrenia (SCZ), 103 patients with major depressive disorder (MD) and 238 healthy controls (HC). Gray scale coassociation matrix (GLCM) is a monomer matrix calculated in a voxel cube. Deep learning methods were evaluated to determine the application capability of texture feature mapping in binary classification (SCZ vs. HC, MD vs. HC, SCZ vs. MD). The method is implemented by repeated nesting and cross-validation for feature selection. Regions that show the highest correlation (positive or negative). In this study, the authors successfully classified SCZ, MD and HC. This suggests that texture analysis can be used as an effective feature extraction method to distinguish different disease states. Compared with other methods, texture analysis can capture richer image information and improve classification accuracy in some cases. The classification accuracy of SCZ and HC, MD and HC, SCZ and MD reached 84.6%, 86.4% and 76.21%, respectively. Among them, SCZ and HC are the most significant features with high sensitivity and specificity.

Neuroanatomical comparison of treatment-resistant and treatment-responsive schizophrenia patients using the cloud-based brain magnetic resonance image segmentation and parcellation system: An MRIcloud study

Recent developments in neuroimaging have improved our understanding of the biological mechanisms underlying schizophrenia. However, neuroimaging findings in treatment-resistant schizophrenia (TRS) remain unclear. In the present study, we aimed to explore potential neuroanatomical regions that may be associated with treatment resistance in schizophrenia patients by comparing neuroanatomical regions of TRS and non-TRS patients using the MRICloud method. A total of 33 schizophrenia patients (meeting DSM 5 diagnostic criteria for schizophrenia) were included in the study. Patients were dichotomized into TRS (n = 18) and non-TRS (n = 15) groups, and all patients underwent MRI. Neuroanatomical regions of TRS and non-TRS patients were compared using the MRICloud method. Disease severity was measured using the Positive and Negative Syndrome Scale (PANSS). Interestingly, a statistically significant greater left Corpus Collosum (CC) thickness was found in TRS patients compared to non-TRS patients. It is clear that further studies comparing TRS patients with non-TRS patients are needed, and these studies should focus on the circuits in the corpus callosum that are thought to play a role in treatment resistance. Further longitudinal studies are also needed to complement the cross-sectional studies, using a multimodal imaging approach in the patients with clearly defined TRS criteria.

A kernelized-bias-corrected fuzzy C-means approach with moment domain filtering for segmenting brain magnetic resonance images

A kernelized-bias-corrected fuzzy C-means approach with moment domain filtering for segmenting brain magnetic resonance images

Training and Testing a CNN-based Engine for Brain MRI Scan Classification and Segmentation

Training and Testing a CNN-based Engine for Brain MRI Scan Classification and Segmentation

Integrated Brain Tumor Detection: PSO-Guided Segmentation with U-Net and CNN Classification

Segmentation of tissues in magnetic resonance (MR) images is vital for effective analysis of brain pathology. However, existing approaches for brain MR image segmentation and feature extraction have limitations such as high computational costs and lower accuracy. To overcome these challenges, this paper presents an integrated approach, termed PSO-Guided Segmentation with U-Net and CNN Classification, for the detection and quantification of brain pathology in MR images. The proposed algorithm combines Particle Swarm Optimization (PSO) for enhanced feature extraction, for the classification CNN while segmentation can be done through U-Net. Numerous tests show that the suggested algorithm performs more effectively and accurately than existing techniques in terms of sensitivity and accuracy. By utilizing cutting-edge technologies like Convolutional Neural Networks (CNN), Particle Swarm Optimization (PSO), and U-Net, significant progress has been made in enhancing the accuracy of MR image segmentation and tumor detection. Compared to traditional methods, our proposed methodology outperforms, enhancing accuracy and sensitivity by approximately 0.44%, significantly decreasing computational expenses while maintaining high precision. However, due to the dynamic nature of technology advancements, it remains imperative to continually explore and develop novel frameworks and algorithms to further improve accuracy and achieve the highest level of performance.