Great advances have been made with the lattice Boltzmann (LB) method for complicated fluid phenomena and fundamental thermal processes over the past three decades. This paper presents a systematic overview of the LB method from 1990 to 2018, based on bibliometric analysis and the Science Citation Index Expanded (SCI-E) database. The results show that China took the leading position in this field, followed by the USA and UK. The Chinese Academy of Sciences had the most publications, while the Los Alamos National Laboratory was first as far as highest average citation per paper and h-index are concerned. Physical Review E was the most productive journal and “Mechanics” was the most frequently used subject category. Keyword analysis indicated that recent research has focused on the natural convection and heat transfer of nanofluid or multiphase flow in complex porous media. Hydrothermal treatment of nanofluid with shape factor on the conditions, such as variable magnetic fields, thermal radiation and slipping boundary, were the research hotspots. Further research perspectives mainly explore the multiscale models for coupling multiple transport phenomena, morphology optimization of porous parameters, new nanoparticles with shape factor, multicomponent LB method considering Knudsen diffusion effect, LB-based hybrid methods, radiation performance or boiling-heat transfer of nanofluid, and the active control of droplets, may continue to attract more attention. Moreover, some new applications, such as phase change of metal foam, erosion induced by nanaofluid, anode circulating, 3D modeling in thermal systems with vibration, and magnetohydrodynamics microfluid devices, could be of interest going forward.