In order to study the heterosis of the interspecific hybrids between sea urchin Strongylocentrotus intermedius and Heliocidaris crassispina, comparative culturing experiments were conducted on individuals of the same age from four groups: S. intermedius (SI), H. crassispina (HC), S. intermedius ♀ × H. crassispina ♂ (SH), and H. crassispina ♀ × S. intermedius ♂ (HS). Growth rate at different stages of development, gonadal production and quality, high-temperature tolerance, and resistance to black-mouth disease were compared among these four species. The results were as follows: in the juvenile sea urchin stage, SH sea urchins exhibited 79.11% and 55.28% body weight heterosis at 16 and 20 °C, respectively, with particularly high single-parent heterosis observed at 16 °C compared to the male parent HC (247.79%). In the young sea urchin stage, SH sea urchins displayed mid-parent heterosis in body weight at all temperatures except 28 °C, reaching a maximum of 94.62% at 12 °C. HS Sea urchins showed mid-parent heterosis only at 12, 24, and 28 °C, with the highest observed at 28 °C (36.51%). The body weight specific growth rate of SH sea urchins was significantly higher than those of the other three species (P < 0.05), and they achieved the largest body weight (48.43 g) by the end of the experiment. The gonad wet weight of SH sea urchins was significantly higher than those of the other three species (P < 0.05). While there was no difference in gonad index between SH and SI sea urchins, it was significantly higher than those of HC and HS sea urchins. In terms of high-temperature tolerance, the upper thermal tolerances (UTT) of HC and HS sea urchins were significantly higher than those of SI and SH sea urchins (P < 0.05). Regarding resistance to black-mouth disease, there was no statistically significant difference in survival rates between SH sea urchins and SI sea urchins after infection with Vibrio echinoideorum at a concentration of 1 cfu/mL. However, the survival rate of HS sea urchins was significantly higher than that of SI. The study demonstrated that the SH hybrid sea urchins exhibit notable advantages in growth and gonad yield compared to its parental species, suggesting its potential as a valuable candidate for the cultivation of new sea urchin varieties in aquaculture. These findings hold significant promise for enhancing the efficiency and sustainability of sea urchin farming practices.