Prevalence In Birds Research Articles

The impact of COVID-19 related flight reductions on bird prevalence and behaviour at Manchester Airport, UK, and the implications for airport management

Airport management is a complex and multifarious activity, involving many operators including airlines, retailers and ground handlers, and processes. The presence of wildlife at airports poses a safety risk to aircraft operations and as such managing wildlife hazards is a mandatory legal responsibility. This is important not only from a safety perspective but also from the fact that safety incidents can impact the operational efficiency and the reputation of an airport. Airport operators are required to devise and enact site-specific Wildlife Hazard Management Plans (WHMP) to reduce the risk of aircraft-wildlife interaction under normal airport operating conditions. The COVID-19 pandemic, however, led to an unprecedented reduction in commercial air traffic and the partial or total suspension of flights at some airports. The aim of this paper is to examine the impact of COVID-19 related flight reductions on bird prevalence and behaviour and the potential implications for airport management. Drawing on an empirical dataset of wildlife observations at Manchester Airport, UK, in 2019 and 2020, this paper details the airfield ornithology before and during the pandemic and examines the impact of COVID-19 related flight reductions on bird prevalence and behaviour. The findings reveal variations in the frequency and apparency of individual species as well as changes in the spatial location of bird sightings on the airfield. The paper concludes by discussing the implications of these findings for post-pandemic operations and for the formulation of future airport wildlife hazard management policies.

Life history traits and cancer prevalence in birds.

Cancer is a disease that affects nearly all multicellular life, including the broad and diverse taxa of Aves. While little is known about the factors that contribute to cancer risk across Aves, life history trade-offs may explain some of this variability in cancer prevalence. We predict birds with high investment in reproduction may have a higher likelihood of developing cancer. In this study, we tested whether life history traits are associated with cancer prevalence in 108 species of birds. We obtained life history data from published databases and cancer data from 5,729 necropsies from 108 species of birds across 24 taxonomic orders from 25 different zoological facilities. We performed phylogenetically controlled regression analyses between adult body mass, lifespan, incubation length, clutch size, sexually dimorphic traits, and both neoplasia and malignancy prevalence. We also compared the neoplasia and malignancy prevalence of female and male birds. Providing support for a life history trade-off between somatic maintenance and reproduction, we found a positive relationship between clutch size and cancer prevalence across Aves. There was no significant association with body mass, lifespan, incubation length, sexual dimorphism, and cancer. Life history theory presents an important framework for understanding differences in cancer defenses across various species. These results suggest a trade-off between reproduction and somatic maintenance, where Aves with small clutch sizes get less cancer.

Seroprevalence studies of Infectious Bronchitis Virus (IBV) in chickens in some area council in FCT, Nigeria

Avian Infectious Bronchitis (AIB) is a viral disease of serious economic importance characterized by coughing, sneezing, loss of weight and drop in egg and quality. There is paucity of information its occurrence and distribution in Abuja-FCT, Nigeria. Hence this study was conducted to establish the sero-prevalence the virus (IBV) among selected poultry types (local chickens, broilers, pullets, and cockerels) in some area councils within FCT. A total of 360 sera were collected and subjected to Enzyme linked immunosorbent assay (ELISA) at Animal Care Laboratory Nyanya, Abuja. The study found an overall prevalence of 80.56% (290/360). While the distribution according location showed the prevalence of 89.17% (107/120) in Kuje area council, 73.30% (88/120) in AMAC, and 79.10% (95/120) in Kwali area council. The distribution according to type of birds showed prevalence of 74.44% (67/90) for broilers, 78.88% (71/90) for cockerels, 71.11%(64/90) for pullets and 97.77% (88/90) for local chicken. The distribution of IBV occurrence according to management showed that the prevalence bird managed under the deep litter systems was 85.88%, while the prevalence in birds managed under cage system 56.00%. In conclusion, this study found an 80.55% prevalence of infectious bronchitis, associated with increased poultry activities. It is therefore recommended that more public education about infectious bronchitis viral disease be carried out in addition to laboratory diagnosis and other preventive measures.

Microbiome of Ceca from Broiler Chicken Vaccinated or Not against Coccidiosis and Fed Berry Pomaces.

American cranberry (Vaccinium macrocarpon) and lowbush/wild blueberry (V. angustifolium) pomace are polyphenol-rich products having potentially beneficial effects in broiler chickens. This study investigated the cecal microbiome of broiler-vaccinated or non-vaccinated birds against coccidiosis. Birds in each of the two groups (vaccinated or non-vaccinated) were fed a basal non-supplemented diet (NC), a basal diet supplemented with bacitracin (BAC), American cranberry (CP), and lowbush blueberry (BP) pomace alone or in combination (CP + BP). At 21 days of age, cecal DNA samples were extracted and analyzed using both whole-metagenome shotgun sequencing and targeted-resistome sequencing approaches. Ceca from vaccinated birds showed a lower abundance of Lactobacillus and a higher abundance of Escherichia coli than non-vaccinated birds (p < 0.05). The highest and lowest abundance of L. crispatus and E. coli, respectively, were observed in birds fed CP, BP, and CP + BP compared to those from NC or BAC treatments (p < 0.05). Coccidiosis vaccination affected the abundance of virulence genes (VGs) related to adherence, flagella, iron utilization, and secretion system. Toxin-related genes were observed in vaccinated birds (p < 0.05) in general, with less prevalence in birds fed CP, BP, and CP + BP than NC and BAC (p < 0.05). More than 75 antimicrobial resistance genes (ARGs) detected by the shotgun metagenomics sequencing were impacted by vaccination. Ceca from birds fed CP, BP, and CP + BP showed the lowest (p < 0.05) abundances of ARGs related to multi-drug efflux pumps, modifying/hydrolyzing enzyme and target-mediated mutation, when compared to ceca from birds fed BAC. Targeted metagenomics showed that resistome from BP treatment was distant to other groups for antimicrobials, such as aminoglycosides (p < 0.05). Significant differences in the richness were observed between the vaccinated and non-vaccinated groups for aminoglycosides, β-lactams, lincosamides, and trimethoprim resistance genes (p < 0.05). Overall, this study demonstrated that dietary berry pomaces and coccidiosis vaccination significantly impacted cecal microbiota, virulome, resistome, and metabolic pathways in broiler chickens.

Multi-Year Comparison of Community- and Species-Level West Nile Virus Antibody Prevalence in Birds from Atlanta, Georgia and Chicago, Illinois, 2005-2016.

West Nile virus (WNV) is prevalent in the United States but shows considerable variation in transmission intensity. The purpose of this study was to compare patterns of WNV seroprevalence in avian communities sampled in Atlanta, Georgia and Chicago, Illinois during a 12-year period (Atlanta 2010-2016; Chicago 2005-2012) to reveal regional patterns of zoonotic activity of WNV. WNV antibodies were measured in wild bird sera using ELISA and serum neutralization methods, and seroprevalence among species, year, and location of sampling within each city were compared using binomial-distributed generalized linear mixed-effects models. Seroprevalence was highest in year-round and summer-resident species compared with migrants regardless of region; species explained more variance in seroprevalence within each city. Northern cardinals were the species most likely to test positive for WNV in each city, whereas all other species, on average, tested positive for WNV in proportion to their sample size. Despite similar patterns of seroprevalence among species, overall seroprevalence was higher in Atlanta (13.7%) than in Chicago (5%). Location and year of sampling had minor effects, with location explaining more variation in Atlanta and year explaining more variation in Chicago. Our findings highlight the nature and magnitude of regional differences in WNV urban ecology.

Studies on parasitic prevalence in pet birds from Punjab, Pakistan.

During this one year study, blood and fecal samples of doves (Zenaida asiatica), ducks (Anas platyrhynchos), pigeons (Columba livia), partridges (Alectoris chukar), turkeys (Meleagris gallopavo) and goose (Chen caerulescens) were collected to assess the parasitic prevalence in these birds. The birds were kept at Avian Conservation and Research Center, Department of Wildlife and Ecology, University of Veterinary and Animal Sciences, Lahore. All these avian species were kept in separate cages and their entire body was inspected on regularly basis to record external parasites. For internal parasites, 100 blood and 100 fecal samples for each species were analyzed. During present study, two species of ectoparasites i.e. fowl ticks (Args persicus) and mite (Dermanyssus gallinae) while 17 species of endoparasites; three from blood and 14 from fecal samples were identified. Prevalence of blood parasites was Plasmodium juxtanucleare 29.3%, Aegyptinella pullorum 15% and Leucoctoyzoon simond 13%. Parasitic species recorded from fecal samples included 6 species of nematodes viz. Syngamus trachea with parasitic prevalence of 50%, Capillaria anatis 40%, Capillaria annulata 37.5%, Heterakis gallinarum 28.3%, Ascardia galli 24% and Allodpa suctoria 2%. Similarly, two species of trematodes viz. Prosthogonimus ovatus having parasitic prevalence of 12.1% and Prosthogonimus macrorchis 9.1% were also recorded from fecal samples of the birds. Single cestode species Raillietina echinobothrida having parasitic prevalence of 27% and 3 protozoan species i.e. Eimeria maxima having prevalence 20.1%, Histomonas meleagridis 8% and Giardia lamblia 5.3% were recorded. In our recommendation, proper medication and sanitation of the bird's houses and cages is recommended to avoid parasites.

TOXOPLASMOSIS IN BROILERS FROM DAKAR - SENEGAL: PREVALENCE AND ASSOCIATED FACTORS

Toxoplasmosis is one of the most common zoonosis worldwide. Caused by the protozoan parasite Toxoplasma gondii, it has estimated that up to a third of the human population worldwides infected with it. Humans are infected by ingesting oocysts shed by cats or by eating undercooked meat containing cysts.T. gondii can cause serious illness to the fetus during a congenital infection and fatal in immuno-compromised patients too. In addition, it infects a wide range of animals, including mammals and birds. In birds, all species can be infected with various signs. Little is known about the prevalence in short-cycle species (broilers). However, due to their feeding habits (birds are pecking and their food is usually soil), the prevalence in birds could be a good indicator of the prevalence of parasite oocysts in soil. Thus, to verify environmental contamination, the prevalence of T. gondii in 459 short-cycle birds (broilers) was determined in Dakar, Senegal. The diagnostic test used was the High Sensitivity Direct Agglutination test (ADHS). The results showed the presence of antibodies against T. gondii in 29 (6.36%) of the broilers Gallus domesticus. This study is the first of its kind to investigate T. gondii in short-cycle domestic poultry in Senegal. Other studies should be carried out with additional and more reliable techniques on this environmental aspect in order to measure the real parasite load and the risks that this could generate.

Detection, Isolation, and Molecular Characterization of Escherichia albertii from Wild Birds in West Japan.

Escherichia albertii is an emerging zoonotic foodborne pathogen. Several outbreaks of E. albertii have occurred, particularly in Japan. Although birds have been considered as one of the most important reservoirs of this bacterium, information regarding its prevalence in birds is still scarce. We performed a survey of E. albertii in wild birds in Japan and examined the characteristics of these isolates. E. albertii-specific genes were detected in five cloacal swabs from 156 birds by PCR. Four E. albertii strains were isolated from a swallow with two different E. albertii strains and two pigeons in a flock using XRM-MacConkey agar. These isolates were assigned to biogroup 3, showed no resistance to any tested antimicrobials, and were classified into two EAO-genotypes (EAOg2 and EAOg33) and were untypable. Similar to clinical E. albertii strains, these isolates carried virulence genes, including eae (n = 4), paa (n = 4), Eccdt-I (n = 2), and stx2f (n = 1), as well as Eacdt. Furthermore, stx2f genes in a strain were located on an inducible bacteriophage, which can confer the ability to produce Stx2f in E. coli. In conclusion, Japanese wild birds carried E. albertii at levels similar to the reported prevalence in birds. These isolates may have the potential to cause gastroenteritis in humans.

The Prevalence of Integument Injuries and Associated Risk Factors Among Canadian Turkeys.

Injurious pecking can cause a wide range of damage and is an important welfare and economic issue in turkey production. Aggressive pecking typically targets the head/neck (HN) area, and feather pecking typically targets the back/tail (BT) area; injuries in these separate areas could be used as a proxy for the level of aggressive and feather pecking in a flock. The objective of this study was to identify risk factors for integument injuries in Canadian turkey flocks. A survey containing a questionnaire about housing and management practices and a scoring guide was distributed to 500 turkey farmers across Canada. The farmer scored pecking injuries in two different body areas (HN and BT) on a 0–2 scale on a subset of birds within each flock. Multivariable logistic regression modeling was used to identify factors associated with the presence of HN and BT injuries. The prevalence of birds with integument injuries ranged widely between the flock subsets (HN = 0–40%, BT = 0–97%), however the mean prevalence was low (HN = 6%, BT = 10%). The presence of injuries for logistic regression was defined as flocks with an injury prevalence greater than the median level of injury prevalence in the dataset (3.3% HN and 6.6% BT). The final logistic regression model for HN injuries contained five variables: flock sex, flock age, number of daily inspections, number of different people during inspections, and picking up birds during inspections (N = 62, pR2 = 0.23, α = 0.05). The final logistic regression model for BT injuries contained six variables: flock sex, flock age, litter depth, litter condition, inspection duration, and use of hospital pens for sick/injured birds (N = 59, pR2 = 0.29, α = 0.05). Flock age, and to a lesser extent, sex was associated with both types of injuries. From a management perspective, aggressive pecking injuries appear to be influenced by variables related to human interaction, namely during inspections. On the other hand, the presence of feather pecking injuries, was associated with litter condition and other management factors like separating sick birds. Future research on injurious pecking in turkeys should focus on these aspects of housing and management to better describe the relationship between the identified variables and the prevalence and severity of these conditions.

Coccidial oocyst release: once a day or all day long? Tropical bird hosts shed new light on the adaptive significance of diurnal periodicity in parasite output.

Many parasites spend part of their life cycle as infectious forms released from an infected host in the external environment, where they may encounter and infect new hosts. The emergence of infectious life stages often occurs once a day to minimize mortality in adverse environments. In bird hosts, intestinal parasites such as coccidia are generally released with feces in the late afternoon. This dynamic is adaptive since it allows avoiding desiccation and ultraviolet (UV) radiation, thus reducing mortality of oocysts in the environment until transmission to the next host. If this circadian rhythm is the result of natural selection to increase oocyst survival, we may hypothesize that oocysts will appear in feces at different times depending on the environment where hosts live. Particularly, in an environment where UV radiation and desiccation are very low, we may expect oocyst circadian release to disappear since the main selective pressure would be relaxed. We sampled different species of birds in tropical and temperate forests in spring and investigated coccidian oocyst output. A strong circadian variation in the prevalence of hosts shedding coccidian oocyst was detected for species caught in the temperate forest with an increase in prevalence in the late afternoon, whereas prevalence of birds shedding oocysts was constant over the course of the day for most species sampled in the tropical rain forest. These results are consistent with the hypothesis that oocysts’ circadian output is maintained by natural selection to increase oocyst survival. We discuss the adaptive significance of diurnal periodicity in parasite output.

A global systematic review and meta-analysis of concentration and prevalence of mycotoxins in birds' egg.

In the current study, the concentration and prevalence of birds' egg's mycotoxins among 11 articles (66 studies) based on countries, part of eggs, and type of mycotoxins subgroups were meta-analyses using a random-effect model. The order of mycotoxin according to concentration of mycotoxin was Deoxynivalenol (20.083 μg/kg) > Zearalenone (2.065 μg/kg) > Enniatin (1.120 μg/kg) > Total aflatoxin (0.371 μg/kg) > Beauvericin (0.223 μg/kg) > Ochratoxins (0.087 μg/kg) > Citrinin (0.010 μg/kg). Further, the mycotoxins' concentration in the yolk part (2.070 μg/kg) was higher than the mixed eggs (0.283 μg/kg). The rank order of mycotoxin based on country was China (14.990 μg/kg) > Cameroon (7.594 μg/kg) > Thailand (1.870 μg/kg) > Finland (0.920 μg/kg) > Iran (0.312 μg/kg) > Jordan (0.202 μg/kg) > Belgium (0.183 μg/kg) > Spain (<Lod μg/kg) > South Korea (<Lod μg/kg). The rank order of mycotoxins based on prevalence was BEA (99.73%) > DON (85.00%) > AFT (20.15%) > OT (16.00%). The overall prevalence of mycotoxin was equal to 29.65%. Also, the concentration of mycotoxins in China and Cameroon was higher than in other countries. Therefore, the monitoring programs to reduce mycotoxins in bird eggs consumed in some countries such as China and Cameroon should be considered.

Blood Lead Declines in Wintering American Black Ducks in New Jersey Following the Lead Shot Ban

AbstractWaterfowl managers first recognized the problem of lead poisoning in ducks from the ingestion of spent lead shot (pellets) over 100 years ago. The phaseout of lead shot for waterfowl hunting began in the Atlantic Flyway in the 1970s. Lead shot was subsequently banned throughout the United States and Canada prior to 2000. We compared blood lead levels in American black ducks Anas rubripes wintering in coastal New Jersey in 1978, prior to the lead ban, and in 2017, about 39 years after lead shot was first banned for use in Atlantic coastal marshes and 27 years after it was banned for waterfowl hunting in New Jersey. The prevalence of blood lead &amp;gt;0.2 ppm, a level commonly used to indicate lead exposure, declined nearly fourfold from 1978 (79%) to 2017 (20%). We found no significant differences in the prevalence of birds with blood lead levels &amp;gt;0.2 ppm between sexes in either year or between age classes in 2017. The prevalence of ducks with blood lead levels &amp;gt;1.0 ppm, considered clinically evident toxicity, declined from 19% in 1978 to 1% in 2017. Our study provides further evidence that the ban on the use of lead shot over 20 years ago throughout North America has resulted in lower blood lead levels in waterfowl. Notwithstanding, we still found evidence of lead exposure in black ducks in 2017, which warrants further investigation.

Contrasting patterns of Campylobacter and Salmonella distribution in wild birds: a comparative analysis

Transmission of gastrointestinal bacteria, Campylobacter spp. and Salmonella spp., from wild birds may have serious consequences for human health and poultry industry. Despite this, our knowledge on the distribution of these bacteria in wild avian populations is limited. Since both genera markedly differ in their pathogenicity in wild birds (Campylobacter is largely non‐pathogenic, while Salmonella is a major pathogen), I expected that their occurrence and modes of transmission can be associated with different ecological and life‐history traits of their avian hosts. To test this hypothesis, I retrieved nearly 700 estimates of Campylobacter and Salmonella prevalences in 200 avian species and implemented phylogenetically‐informed comparative analysis to examine variation in their prevalence. Campylobacter had wider phylogenetic distribution and higher average prevalence in birds than Salmonella. Campylobacter prevalence showed strong associations with basic life‐history components of birds (body mass, development rate and longevity), while Salmonella prevalence was primarily determined by ecological traits (sociality and urbanization). The results also provided support for biogeographical differences and contrasting temporal trends in the occurrence of these bacteria in birds. The study helps to explain the patterns of Campylobacter and Salmonella distribution in wild bird populations from a broad phylogenetic perspective and it might be helpful to establish successful policies aiming to reduce a negative impact of these bacteria on both human health and poultry industry.

Human psittacosis in Japan: notification trends and differences in infection source and age distribution by gender, 2007 to 2016

PurposePsittacosis is a bacterial zoonosis caused by Chlamydia (Chlamydophila) psittaci that infects birds. Although potentially fatal, infections can be reduced by controlling the source of infection. We therefore described the epidemiology of psittacosis, focusing on the infection source. MethodsWe descriptively analyzed psittacosis cases reported through national surveillance in Japan from 2007 to 2016. We also analyzed Chlamydia psittaci prevalence among captive psittaciformes during the same period. ResultsOne hundred eleven cases were reported, and the annual number and notification rate of psittacosis declined. While 58% were male and the median age was 61 years, the median age differed by gender (males: 63 years, females: 53 years), with more female cases in those aged <50 years. In addition, the most common infection source differed by gender (men: columbiformes; women: psittaciformes). The decline in notifications was associated with a decline in psittaciformes-associated cases, with a concomitant decline in female cases. The prevalence of C. psittaci among captive psittaciformes also decreased over the period. ConclusionsWe found important differences in the epidemiology of psittacosis by gender, and the recent decrease in notifications correlated with decreasing C. psittaci prevalence in birds. Risk communications for psittacosis should consider the current epidemiology regarding gender, age, and infection source.

Seasonal dynamics in mosquito abundance and temperature do not influence avian malaria prevalence in the Himalayan foothills.

We examined seasonal prevalence in avian haemosporidians (Plasmodium and Haemoproteus) in migrant and resident birds in western Himalaya, India. We investigated how infection with haemosporidians in avian hosts is associated with temporal changes in temperature and mosquito abundance along with host abundance and life‐history traits (body mass). Using molecular methods for parasite detection and sequencing partial cytochrome b gene, 12 Plasmodium and 27 Haemoproteus lineages were isolated. Our 1‐year study from December 2008 to December 2009 in tropical Himalayan foothills revealed a lack of seasonal variation in Plasmodium spp. prevalence in birds despite a strong correlation between mosquito abundance and temperature. The probability of infection with Plasmodium decreased with increase in temperature. Total parasite prevalence and specifically Plasmodium prevalence showed an increase with average avian body mass. In addition, total prevalence exhibited a U‐shaped relationship with avian host abundance. There was no difference in prevalence of Plasmodium spp. or Haemoproteus spp. across altitudes; parasite prevalence in high‐altitude locations was mainly driven by the seasonal migrants. One Haemoproteus lineage showed cross‐species infections between migrant and resident birds. This is the first molecular study in the tropical Himalayan bird community that emphasizes the importance of studying seasonal variation in parasite prevalence. Our study provides a basis for further evolutionary study on the epidemiology of avian malaria and spread of disease across Himalayan bird communities, which may not have been exposed to vectors and parasites throughout the year, with consequential implications to the risk of infection to naïve resident birds in high altitude.

First record of nestling relocation by adult Gyrfalcons (Falco rusticolus) following nest collapse

ABSTRACT Nest collapse has been documented in many bird species, with little discussion of adult behavior following collapse. We present evidence of a partial collapse of a Gyrfalcon (Falco rusticolus) nest during the nestling period and the subsequent adult response. A nest camera captured the nest collapse and showed one adult Gyrfalcon holding a live nestling in its beak before leaving the nest. Later, we found the surviving nestling alive in an alternate nest 5 m from the original nest, presumably transported there by the adult. We believe this is the first report of an adult Gyrfalcon moving a nestling to a new location following nest disturbance. We place this observation into a context of Gyrfalcon nesting behavior described in published sources. The continued use of nest cameras may provide additional documentation and insight into this behavior and its prevalence in birds.

Impact of the separate pre-slaughter stages on broiler chicken welfare

Before broilers are slaughtered, several parties are involved in catching, loading, transportation and lairage. During these pre-slaughter activities, broilers are exposed to a variety of stressors. A detailed understanding of how broiler welfare is impaired during each stage could help the responsible parties to make targeted improvements. The aim of this study was to identify welfare problems occurring during the consecutive stages of commercial broiler transportation and to identify risk factors associated with the identified welfare problems. Commercial Belgian transports (n = 81) were assessed in spring (n = 14), summer (n = 33), autumn (n = 10), and winter (n = 24), and potential risk factors were recorded by the observer. Animal-based welfare indicators were scored before the start of the pre-slaughter phase as well as after the catching, transport and lairage, and slaughter stages to assess the impact of each stage. The most frequently observed welfare impairments were vent and thigh lesions, panting, wing fractures, and bruising on wings and breasts. Our results show that the impact of the pre-slaughter phase on broiler welfare is multifaceted. The overall pre-slaughter phase resulted in a mean weight decrease of 5.3%, a prevalence of 1.4% in leg bruising, and 3.7% in breast or wing bruising. Wing fractures occurred mainly during the catching stage: Prevalence increased from 0.1% to 1.9% (P = 0.003). A welfare comparison before and after transportation and lairage revealed that plumage had become more soiled (P = 0.003), body temperature decreased by 0.7°C (P < 0.001), huddling prevalence increased by 0.5% (P = 0.008), prevalence of birds with splayed legs increased by 0.08% (P = 0.008), prevalence of supine birds decreased by 0.05% (P = 0.003), and 0.1% fewer birds with wings stuck in the crates (P = 0.010) were observed. Risk factor analyses revealed that carefully choosing the catching crew, minimizing thermal stress, reducing duration of transportation, and worker training are promising actions that may improve broiler welfare during the pre-slaughter phase.

A Novel Methicillin-Resistant Staphylococcus aureus t11469 and a Poultry Endemic Strain t002 (ST5) Are Present in Chicken in Ebonyi State, Nigeria.

Background The changing epidemiology of methicillin-resistant Staphylococcus aureus (MRSA) from a hospital-associated pathogen to an organism commonly found in the community and in livestock reflects an organism well-equipped to survive in diverse environments and adjust to different environmental conditions including antimicrobial use. Methods We investigated the molecular epidemiology of S. aureus and MRSA in poultry in Ebonyi State, Nigeria. Samples were collected from 1800 birds on 9 different farms within the state. Positive isolates were tested for antibiotic susceptibility and molecular typing. Results Prevalence in birds was 13.7% (247/1800). MRSA prevalence in poultry was 0.8%. The prevalence of MRSA in broilers and layers was 1.2% and 0.4%, respectively. All tested isolates were susceptible to vancomycin. Molecular analysis of the isolates revealed 3 spa types: t002, t084, and a novel spa type, t11469. The novel spa type t11469 belonged to sequence type ST5. Conclusion The detection of t002 in chicken suggests the presence of livestock-associated MRSA in poultry in Ebonyi State. The detection of the new spa type t11469 in poultry that has not been characterised to ascertain its pathogenic potential remains a cause for concern, especially as some were found to carry PVL genes, a putative virulence factor in staphylococcal infection.

Tiny terminological disagreements with far reaching consequences for global bird trends

Various combinations of data and expert opinion have been used to select species for indices of bird trends. Commonly these indices break species into groups based on their habitat preference such as woodland specialist, farmland specialist and generalist birds. It is unclear what influence differences in how species are allocated to these groups might have on trends in these indices. There is uncertainty surrounding reported trends in these bird groups with studies variously showing declines or increases in prevalence. This is usually attributed to ecological factors but if studies classify bird groups differently this variation may be due to inconsistency in classification. Disagreement about whether these bird groups are stable, increasing or declining has the potential to obscure important changes in bird prevalence and impede appropriate, timely conservation.We examined how consistently European and Australian researchers classified woodland, farmland and generalist birds, and whether this affected the trends in indices of these groups. Researchers from both regions classified species differently, and the population trends seen in these groups were strongly affected by differences in classification. While all classifications we studied suggest that populations are consistently declining for Australian woodland and European farmland birds and increasing for European woodland birds. European generalist and Australian farmland and generalist birds may be seen as increasing or decreasing in prevalence depending on classification.Our results question the current practice of idiosyncratically classifying indicators in scientific research and conservation. Current practice is making it more difficult to infer whether, when and how to preserve bird groups in Europe and Australia, potentially leading to sub-optimal biodiversity outcomes. We offer suggestions for building consensus on how to classify these bird groups in order to provide more reliable evidence to support conservation decisions.

Avian malaria in a boreal resident species: long-term temporal variability, and increased prevalence in birds with avian keratin disorder

The prevalence of vector-borne parasitic diseases is widely influenced by biological and ecological factors. Environmental conditions such as temperature and precipitation can have a marked effect on haemosporidian parasites (Plasmodium spp.) that cause malaria and those that cause other malaria-like diseases in birds. However, there have been few long-term studies monitoring haemosporidian infections in birds in northern latitudes, where weather conditions can be highly variable and the effects of climate change are becoming more pronounced. We used molecular methods to screen more than 2,000 blood samples collected from black-capped chickadees (Poecile atricapillus), a resident passerine bird. Samples were collected over a 10year period, mostly during the non-breeding season, at seven sites in Alaska, USA. We tested for associations between Plasmodium prevalence and local environmental conditions including temperature, precipitation, site, year and season. We also evaluated the relationship between parasite prevalence and individual host factors of age, sex and presence or absence of avian keratin disorder. This disease, which causes accelerated keratin growth in the beak, provided a natural study system in which to test the interaction between disease state and malaria prevalence. Prevalence of Plasmodium infection varied by year, site, age and individual disease status but there was no support for an effect of sex or seasonal period. Significantly, birds with avian keratin disorder were 2.6times more likely to be infected by Plasmodium than birds without the disorder. Interannual variation in the prevalence of Plasmodium infection at different sites was positively correlated with summer temperatures at the local but not statewide scale. Sequence analysis of the parasite cytochrome b gene revealed a single Plasmodium spp. lineage, P43. Our results demonstrate associations between prevalence of avian malaria and a variety of biological and ecological factors. These results also provide important baseline data that will be informative for predicting future changes in Plasmodium prevalence in the subarctic.