Bioremediation Of Heavy Metal-contaminated Soil Research Articles

Geospatial evaluation and bio-remediation of heavy metal-contaminated soils in arid zones

Introduction: Soil pollution directly impacts food quality and the lives of both humans and animals. The concentration of heavy metals in Egypt’s drain-side soils is rising, which is detrimental to the quality of the soil and crops. The key to reducing the detrimental effects on the ecosystem is having accurate maps of the spatial distribution of heavy metals and the subsequent use of environmentally sustainable remediation approaches. The objective of this work is to assess soil contamination utilizing spatial mapping of heavy metals, determine contamination levels using Principal Component Analysis (PCA), and calculate both the contamination severity and the potential for bioremediation in the soils surrounding the main drain of Bahr El-Baqar. Furthermore, evaluating the capacity of microorganisms (bacteria, fungi, and “Actinomycetes) to degrade heavy elements in the soil.Methodology: 146 soil sample locations were randomly selected near the Bahr El-Baqar drain to examine the degree of soil pollution Ordinary Kriging (OK), method was used to map and analyze the spatial distribution of soil contamination by seven heavy metals (Cr, Fe, Zn, Cd, Pb, As, and Ni). Modified contamination degree (mCd) and PCA were used to assess the research area’s soil pollution levels. The process involved isolating, identifying, and classifying the microorganisms present in the soil of the study area. The study findings showed that variography suggested the Stable model effectively matched pH, SOM, and Cd values. Furthermore, the exponential model proved suitable for predicting Fe, Pb and Ni, while the spherical model was appropriate for Ni, Cr, and Zn.Results: The study revealed three levels of contamination, with an extremely high degree (EHDC) affecting approximately 97.49% of the area. The EHDC exhibited average concentrations of heavy metals: 79.23 ± 17.81 for Cr, 20,014.08 ± 4545.91 for Fe, 201.31 ± 112.97 for Zn, 1.33 ± 1.37 for Cd, 40.96 ± 26.36 for Pb, 211.47 ± 13.96 for As, and 46.15 ± 9.72 for Ni. Isolation and identification of microorganisms showed a significant influence on the breakdown of both organic and inorganic pollutants in the environment. The study demonstrated exceptionally high removal efficiency for As and Cr, with a removal efficiency reached 100%, achieved by Rhizopus oryzae, Pseudomonas aeruginosa, and Bacillus thuringiensis.Conclusion: This study has designated management zones for soil contamination by mapping soil pollutants, geo-identified them, and found potential microorganisms that could significantly reduce soil pollution levels.

Mycoremediation of Heavy Metals Contaminated Soil by Using Indigenous Metallotolerant Fungi

Abstract The present study was aimed to identify the indigenous fungal strains which could possibly be applied to the biore-mediation of heavy metal-contaminated soil. The contaminated soil samples of Korangi Industrial Estate Karachi were found to have total concentration of Cu 1.044 mgL1, and Pb 0.631 mgL–1. A total of eight indigenous strains of the fungus were isolated and screened for bioremediation capacity from heavy metals-contaminated soil. For the bioremediation of Lead (Pb) these same indigenous eight fungal strains were used for biological remediation. All the fungal isolated with enhanced bioremediation capability were through phenotypic and genotypical characterization. The topology of the phylograms established that the fungal isolates used in this study were allocated to: K1 (Penicillium notatum), K2 (Aspergillus parasiticus), K3 (Aspergillus fumigatus), K4 (Aspergillus flavus), K5 (Aspergillus terries), K6 (Fusarium solani), K7 (Penicillium chrysogenum), K8 (Aspergillus niger), K9 (Penicillium piceum) and K10 (Penicillium restrictum). Thus, K8 fungal isolate was found to be more efficient with maximum bioremediation capacity, for copper and lead removal efficiency, and selected for FTIR and SEM to find out the uptake of Cu and Pb which of the functional groups are involved, and further to detect the effects of bioleaching of both heavy metals on to the surface of K8 fungus biomass. The current study indicates that indigenous fungal isolates could be used with high potency to remediate or clean up the heavy metals-contaminated soil either by the technique of in situ or ex-situ bioremediation.

Bio-Remediation of Heavy Metal-Contaminated Soil by Microbial-Induced Carbonate Precipitation (MICP)—A Critical Review

Biomineralization processes utilizing microbial-induced carbonate precipitation (MICP) have recently shown promise as an effective approach for remediating heavy metal contamination. This article offers a comprehensive review of the latest research on MICP-mediated heavy metal remediation, with a focus on the characteristics of heavy metals in the treated environment, such as copper, cadmium, lead, nickel, zinc, chromium, and mixed heavy metals. The review summarizes experimental results from various heavy metals treated by MICP, including the enrichment and screening of new urease-positive bacteria, the mineral structure of different heavy metal precipitates, and the efficiency of the MICP technology. Recent advancements in the MICP technology regarding heavy metal removal, long-term stability, and practical applications are also discussed. Additionally, the limitations of the technique and existing solutions are reviewed. In addition, it provides insights on future directions for further research and development of the MICP approach for heavy metal remediation, in order to optimize the technique and improve its efficiency. Overall, the review highlights the potential of MICP as a viable method for heavy metal remediation, offering promising results for the removal of a variety of heavy metal contaminants from contaminated environments.

Penicillium spp. XK10, Fungi with Potential to Repair Cadmium and Antimony Pollution

Soil heavy-metal pollution is one of the most important environmental problems in the world, and seriously endangers plant growth and human health. Microbial remediation has become a key technology in the field of soil heavy-metal remediation due to its advantages of being harmless, green and environmental. In this study, a fungus Penicillium spp. XK10 with high tolerance to cadmium (Cd) and antimony (Sb) was screened from mine slag, and its adsorption characteristics to heavy metals under different environmental conditions were studied. The results showed that at pH0 = 6, C0 (Cd) = 0.1 mM, and the adsorption time was 4 days, the maximum removal rate of cadmium by XK10 was 32.2%. Under the conditions of pH0 = 4, T = 7d, and the initial antimony concentration of 1 mM, the removal rate of antimony by XK10 was the highest, which was 15.5%. This study provides potential microbial materials for bioremediation of heavy metal-contaminated soils.

Antimicrobial activity of bacteria associated with the rhizosphere and phyllosphere of Avena fatua and Brachiaria reptans.

Environmental pollution especially heavy metal-contaminated soils adversely affects the microbial communities associated with the rhizosphere and phyllosphere of plants growing in these areas. In the current study, we identified and characterized the rhizospheric and phyllospheric bacterial strains from Avena fatua and Brachiaria reptans with the potential for antimicrobial activity and heavy metal resistance. A total of 18 bacterial strains from the rhizosphere and phyllosphere of A. fatua and 19 bacterial strains from the rhizosphere and phyllosphere of B. reptans were identified based on 16S rRNA sequence analysis. Bacterial genera, including Bacillus, Staphylococcus, Pseudomonas, and Enterobacter were dominant in the rhizosphere and phyllosphere of A. fatua and Bacillus, Marinobacter, Pseudomonas, Enterobacter, and Kocuria, were the dominating bacterial genera from the rhizosphere and phyllosphere of B. reptans. Most of the bacterial strains were resistant to heavy metals (Cd, Pb, and Cr) and showed antimicrobial activity against different pathogenic bacterial strains. The whole-genome sequence analysis of Pseudomonas putida BR-PH17, a strain isolated from the phyllosphere of B. reptans, was performed by using the Illumina sequencing approach. The BR-PH17 genome contained a chromosome with a size of 5774330 bp and a plasmid DNA with 80360 bp. In this genome, about 5368 predicted protein-coding sequences with 5539 total genes, 22 rRNAs, and 75 tRNA genes were identified. Functional analysis of chromosomal and plasmid DNA revealed a variety of enzymes and proteins involved in antibiotic resistance and biodegradation of complex organic pollutants. These results indicated that bacterial strains identified in this study could be utilized for bioremediation of heavy metal-contaminated soils and as a novel source of antimicrobial drugs.

Plant–microbe–metal interactions for heavy metal bioremediation: a review

Considerable amounts of heavy metals have contaminated the soil from potential manmade point and non-point sources such as industry, urbanisation and agriculture. In both managed and natural ecosystems, beneficial plant–microbe interactions play a significant role improving the growth and health of plants, and could be applied for improving soil fertility as well as crop productivity. Additionally, plant–microbe interactions could be utilised in bioremediation of heavy metal-contaminated soils. The efficiency of phytoremediation can be improved with the aid of plant-growth-promoting bacteria (PGPB), which can change metals to bioavailable and soluble forms. PGPB perform remediation through processes such as production of siderophores, organic acids and biosurfactants, biomethylation, redox processes, phosphorus solubilisation, nitrogen fixation and iron sequestration. These processes improve plant growth and increase plant biomass along with phytoremediation. A crucial solution to the problem of heavy metal contamination might be an appropriate understanding of hyperaccumulator plants and their interaction with microbes. Emerging strategies for either enhancing or reducing the bioavailability of heavy metals in the rhizosphere, such as improving plant establishment, growth and health can significantly accelerate the heavy metal bioremediation process. In this review, we feature the function of PGPB to assist phytoremediation of heavy metals as an eco-friendly and economical approach.

Inoculation of Cd-contaminated paddy soil with biochar-supported microbial cell composite: A novel approach to reducing cadmium accumulation in rice grains

Bioremediation of heavy metal-contaminated soil using metal-resistant microbes is a promising remediation technology. However, as exogenous bacteria sometimes struggle to survive and grow when introduced to new soils, it is important to develop appropriate carriers for microbial populations. In this study, we report a novel approach to remediating Cd-contaminated rice paddy soil using biochar-supported microbial cell composites (BMCs) produced from agricultural waste (cornstalks). Pot experiments showed that amendment with BMC was more efficient at reducing root and grain Cd content than pure bacteria, while improving soil Cd fractionation toward more stabilized and less labile forms. Bacteria in the BMC medium grew more readily with more abundant metabolites than those raised in free cells, probably because biochar provides shelter via porous structures (as confirmed by scanning electron microscopy) as well as additional nutrients. Overall, the improved long-term production of microbial biomass caused by BMC inoculation results in a higher remediation efficiency. Our results demonstrate the feasibility of using biochar as an appropriate carrier for metal-tolerant bacteria to remediate Cd-contaminated paddy fields.

Dynamics and potential roles of abundant and rare subcommunities in the bioremediation of cadmium-contaminated paddy soil by Pseudomonas chenduensis.

Microbial bioremediation of heavy metal-contaminated soil is a potential technique to reduce heavy metals in crop plants. However, the dynamics and roles of the local microbiota in bioremediation of heavy metal-contaminated soil following microbial application are rarely reported. In this study, we used Pseudomonas chenduensis strain MBR for bioremediation of Cd-contaminated paddy soil and investigated its effects on the dynamics of the local soil bacterial community and Cd accumulation in rice. Cd accumulation in rice grains and roots were significantly reduced by the addition of the strain MBR. The addition of the strain MBR caused greater changes in bacterial communities in rhizosphere soil than in bulk soil. MBR enhanced the roles of microbial communities in transformation of Cd fractions, especially in rhizosphere soil. The strain MBR likely regulated abundant subcommunities more than rare subcommunities to improve Cd bioremediation, especially in rhizosphere soil. Consequently, the dynamics and functional roles of the local microbial communities differed significantly during bioremediation between abundant and rare subcommunities and between rhizosphere soil and bulk soil. This study provides new insight into the microbiota-related mechanisms underlying bioremediation.

Identification and characterization of plant growth-promoting endophyte RE02 from Trifolium repens L. in mining smelter.

Endophyte-assisted phytoremediation is considered to be an effective approach for bioremediation of heavy metal-contaminated soil; however, few information is available on Trifolium repens L. and its endophytes to remediate heavy metal-polluted soils. In this study, heavy metal-resistant endophytes were isolated from T. repens growing in mining smelter and identified by BIOLOG system. The isolate was also evaluated for promoting plant growth in heavy metal-contaminated soils in pot experiments. A total of eight Cd2+-resistant endophytes were isolated and these isolates preferred to grow on L-aspartic acid and α-D-glucose. All the isolates had at least two plant growth-promoting properties including siderophore production, phosphate solubilization activity, indole acetic acid (IAA) production, and 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity. Strain RE02, identified as Pseudomonas putida by Biolog system, showed the highest Cd tolerance and could reduce Cd concentration from 20 to 1.84mgL-1 in about 49h in liquid medium, amounting to about 90.8%. Among the five endophytes which have positive effect on the growth of T. repens, RE02, whose IAA production ability was 7.06mgL-1 and phosphate solubilization was 134.76mgL-1, could improve T. repens root and shoot biomass by 25.9% and 37.7% in cadmium-contained soil, respectively. Our research may provide a new microbial-enhanced phytoremediation of heavy metal-polluted soils and improve the remediation efficiency.

Transcriptome Response to Heavy Metals in Sinorhizobium meliloti CCNWSX0020 Reveals New Metal Resistance Determinants That Also Promote Bioremediation by Medicago lupulina in Metal-Contaminated Soil.

The symbiosis of the highly metal-resistant Sinorhizobium meliloti CCNWSX0020 and Medicago lupulina has been considered an efficient tool for bioremediation of heavy metal-polluted soils. However, the metal resistance mechanisms of S. meliloti CCNWSX00200 have not been elucidated in detail. Here we employed a comparative transcriptome approach to analyze the defense mechanisms of S. meliloti CCNWSX00200 against Cu or Zn exposure. Six highly upregulated transcripts involved in Cu and Zn resistance were identified through deletion mutagenesis, including genes encoding a multicopper oxidase (CueO), an outer membrane protein (Omp), sulfite oxidoreductases (YedYZ), and three hypothetical proteins (a CusA-like protein, a FixH-like protein, and an unknown protein), and the corresponding mutant strains showed various degrees of sensitivity to multiple metals. The Cu-sensitive mutant (ΔcueO) and three mutants that were both Cu and Zn sensitive (ΔyedYZ, ΔcusA-like, and ΔfixH-like) were selected for further study of the effects of these metal resistance determinants on bioremediation. The results showed that inoculation with the ΔcueO mutant severely inhibited infection establishment and nodulation of M. lupulina under Cu stress, while inoculation with the ΔyedYZ and ΔfixH-like mutants decreased just the early infection frequency and nodulation under Cu and Zn stresses. In contrast, inoculation with the ΔcusA-like mutant almost led to loss of the symbiotic capacity of M. lupulina to even grow in uncontaminated soil. Moreover, the antioxidant enzyme activity and metal accumulation in roots of M. lupulina inoculated with all mutants were lower than those with the wild-type strain. These results suggest that heavy metal resistance determinants may promote bioremediation by directly or indirectly influencing formation of the rhizobium-legume symbiosis.IMPORTANCE Rhizobium-legume symbiosis has been promoted as an appropriate tool for bioremediation of heavy metal-contaminated soils. Considering the plant-growth-promoting traits and survival advantage of metal-resistant rhizobia in contaminated environments, more heavy metal-resistant rhizobia and genetically manipulated strains were investigated. In view of the genetic diversity of metal resistance determinants in rhizobia, their effects on phytoremediation by the rhizobium-legume symbiosis must be different and depend on their specific assigned functions. Our work provides a better understanding of the mechanism of heavy metal resistance determinants involved in the rhizobium-legume symbiosis, and in further studies, genetically modified rhizobia harboring effective heavy metal resistance determinants may be engineered for the practical application of rhizobium-legume symbiosis for bioremediation in metal-contaminated soils.

Kestabilan Inokulan Azotobacter selama Penyimpanan pada Dua Suhu

Azotobacter might be used as biological agents in bioremediation of heavy metal-contaminated soil since this rhizobacteria produceexopolysachharides (EPS) that mobilize soil heavy metals, and phytohormones that regulate root growth. So that heavy metal uptake bythe roots could be increased. The objective of this research was to verify the stability of EPS and phytohormones in Azotobacter liquidinoculants during four months in different temperature storage. Liquid inoculants has been produced in EPS-induced media and stored in200C and room temperature (24-270C) during four months. The results showed that the better temperature storage was room temperatureinstead of 20 0C since pH, total N, and EPS and phytohormones content was relatively stable during storage.

Adsorption of Copper and Cadmium by Cu- and Cd-Resistant Bacteria and Their Composites with Soil Colloids and Kaolinite

Remediation of toxic metals by bacteria offers a relatively inexpensive and efficient way for the decontamination of soil and associated environments. The present study was carried out to investigate the surface characteristics, adsorption, and remobilization of Cd and Cu on bacteria and their composites with soil colloidal components, which are the most active constituents in soils. The bacterial strain NTG-01 (Enterobacter aerogenes), which was both Cd- and Cu-resistant, was isolated from a heavily Cu-contaminated soil of the mining area in Daye suburb of Hubei Province, China. Batch laboratory experiments with NTG-01 and soil colloids were performed to quantify adsorption of Cu and Cd. The surface area of kaolinite and the soil colloids from an Alfisol and Ultisol increased by 3.0–8.8% after the introduction of the bacteria. In the presence of bacterial cells, the negative charges of soil colloid systems increased and the positive charges decreased, shifting pH from 4.0 to 6.5. Our results demonstrate that bacteria promote the adsorption of Cd and Cu by kaolinite and soil colloid systems. However, the heavy metals bound by the bacterial composites could also be easily released by NH4NO3 and EDTA. Caution should be taken when using such bacterial strains in bioremediation of heavy metal-contaminated soils.

A Methylobacterium-like organism from algal crusts covering silicone rubber electric insulators in Africa.

The primary goals of this study were to isolate, identify and characterize culturable bacteria living in a close association with microalgae within green crusts covering silicone rubber electric insulators in Tanzania. Twenty-four bacterial colonies were isolated from an Apatococcus crust. Characterization by statistical analyses of total cellular protein profiles demonstrated that they were highly similar to one another. Final identification was achieved using 16S rDNA sequencing and fatty acid methyl ester profiling. These analyses revealed the presence of microbes with high similarity to Methylobacterium radiotolerans. The selected isolate, A1, displayed strong inhibitory activity against Rhizoctonia solani and was found to be resistant to relatively high concentrations of zinc in the growth medium. This study revealed the presence of M. radiotolerans bacteria in a novel environment--within algal crusts formed on electrical insulators in Africa. Moreover, this bacterium was found to be a predominant culturable species within those complex algal-microbial associations. The isolate also shared some traits of biotechnological importance with other members of the Methylobacterium genus. The data presented provide a valuable contribution concerning the formation and function of associations between green microalgae and bacteria. This study also provides some information about the utility of bacteria from the genus Methylobacterium in biotechnological applications, such as biocontrol of rhizoctoniosis and bioremediation of heavy metal-contaminated soils.