Biological Nitrification Research Articles

Biological Nitrification Inhibition by Australian Tussock Grass and Its Impact on the Rhizosphere Ammonia-Oxidizing Microbiome

Certain plant species have developed the ability to express biological nitrification inhibition (BNI), suppressing the activity of nitrifying microbes and thereby reducing the conversion of ammonium to nitrate. This study assessed the BNI capacity and the rhizosphere ammonia-oxidizing microbiome of two grass species: the endemic Australian Barley Mitchell grass (Astrebla pectinata) and the introduced koronivia grass (Urochloa humidicola), using soils from both agricultural land and native vegetation. In agricultural soil, koronivia grass exhibited significantly higher BNI capacity compared with Barley Mitchell grass. However, in native soil, this trend was reversed, with Barley Mitchell grass demonstrating a significantly greater BNI capacity than koronivia grass (52% vs. 38%). Koronivia grass significantly altered the composition of the ammonia-oxidizing bacteria community in its rhizosphere, leading to a decrease in the Shannon index and bacteria number. Conversely, Barley Mitchell grass reduced the Shannon index (1.2 vs. 1.7) and population size (3.28 × 107 vs. 7.43 × 107 gene copy number g−1 dry soil) of the ammonia-oxidizing archaea community in its rhizosphere to a greater extent. These findings suggest that Australian Barley Mitchell grass may have evolved mechanisms to suppress soil archaeal nitrifiers, thereby enhancing its BNI capacity and adapting to Australia’s nutrient-poor soils.

Estimating the effect of biological nitrification inhibition-enabled sorghum on nitrogen fertilizer consumption, life cycle GHG emissions, farmer's benefit and fertilizer subsidy from Indian sorghum production

Biological nitrification inhibition (BNI) effectively curtails nitrogen (N) loss and enhances N utilization efficiency. BNI is increasingly important as a technology for mitigating greenhouse gas emissions and water pollution in countries with high N fertilizer consumption. This study aimed to evaluate the potential impacts of BNI-enabled sorghum varieties with a 30 % soil nitrification inhibition rate for a major sorghum-growing state (Maharashtra, India). We analysed the farm survey data collected for Rabi sorghum in 2020–2021 (n = 250) and for Kharif sorghum in 2022 (n = 209). Life cycle greenhouse gas (LC-GHG) emissions were estimated using a life cycle assessment with a cradle-to-farm gate perspective. The results showed that adoption of BNI-enabled sorghum reduced N fertilizer application in the Rabi and Kharif seasons by 8.0 % and 7.4 % and area-scaled/yield-scaled LC-GHG emissions by 15.6 % and 11.2 %, respectively, while increasing farmers' benefits slightly. These changes could reduce the government's expenditure on urea fertilizer subsidies by 9.1 %. However, many farmers indicated that they would not change N fertilizer application even if the yield per N fertilizer application increased. Even under these circumstances, area-scaled/yield-scaled LC-GHG emissions will be decreased by 11.3 % and 13.5 % in the Rabi season and 8.1 % and 10.2 % in the Kharif season, respectively. The yield and farmers' benefit will increase by 2.5 % and 4.9 % in the Rabi season and by 2.4 % and 6.5 % in the Kharif season, respectively, but the government's expenditure on fertilizer will not decrease. These results indicate that BNI-enabled sorghum can be introduced into countries where fertilizer use is low. This study shows the potential impacts of BNI-enabled sorghum under two scenarios; N fertilizer consumption is reduced or maintained. Discussions on the N fertilizer consumption under BNI-enabled sorghum are needed to establish a sustainable food system, especially in countries with high N fertilizer consumption.

Selecting an optimal sorghum cultivar can improve nitrogen availability and wheat yield in crop rotation.

Sorghum (Sorghum bicolor L. Moench) is a cereal crop known for its biological nitrification inhibition (BNI) capacity, a plant-mediated activity limiting nitrification pathway. The use of BNI-producing plants represents an environmentally friendly and cost-effective approach to reduce nitrogen (N) losses, such as nitrate (NO3 -) leaching and nitrous oxide (N2O) gas emissions. The present study aimed to test the effectiveness of different S. bicolor cultivars in rotation to retain ammonium (NH4 +) in soils and promote N availability for the subsequent wheat crop. A two-year field rotation was established with four sorghum cultivars followed by winter wheat (Triticum aestivum L.). Urea alone or combined with the urease inhibitor N-(n-butyl) thiophosphoric triamide was applied to promote a NH4 +-based fertilization regimes. AddingN-(n-butyl) thiophosphoric triamide maintained higher soil NH4 + content and reduced ammonia-oxidizing bacteria population during sorghum cultivation. However, the benefits of the inhibitor on sorghum growth were cultivar-dependent. Notably, the further reduction in ammonia-oxidizing bacteria abundance for sorghum Voyenn and the increased soil NH4 + content for Vilomene suggested a BNI potential for these cultivars. Importantly, the Vilomene precedent enhanced wheat yield for both fertilization regimes. Overall, the present study confirms that sorghum is a suitable catch crop and emphasizes the importance of selecting the proper sorghum cultivar to maximize the yield of the target wheat crop, at the same time as minimizing N losses. Furthermore, developing combined strategies with selected sorghum cultivars and the application of urease inhibitors enables to enhance sorghum productivity as forage, achieving added value to the rotation. © 2024 The Author(s). Journal of the Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

Combining abilities and quantitative inheritance of sorgoleone exudation in Sorghum bicolor

AbstractSorghum (Sorghum bicolor) has the ability to inhibit the conversion of ammonium to nitrate (biological nitrification inhibition [BNI]) in the rhizosphere, which in turn prevents the loss of bioavailable nitrogen. Sorgoleone is a lipidic compound secreted by sorghum root hairs and is responsible for roughly 60% of BNI activity in sorghum. Previous studies revealed variation in sorgoleone secretion among different accessions and cultivars. However, little information is available regarding the genetic inheritance of sorgoleone secretion in sorghum. To increase sorgoleone through breeding, an understanding of the inheritance of this trait is required. In this study, 21 seed parents and 21 pollinator parents from the Texas AgriLife Research sorghum breeding program were crossed in an incomplete factorial design to generate 158 hybrids, and sorgoleone secretion from both hybrids and inbreds was quantified. There was significant variation in sorgoleone secretion across hybrids and inbred lines, and small but significant mid‐parent heterosis was observed in the hybrids. A linear mixed model analysis to calculate general and specific combining abilities for inbred parents and hybrids detected significant genetic effects for the male, the female, and male × female interactions (p < 0.001). Broad‐sense heritability was high ( = 0.87), while narrow‐sense heritability for the seed parents and pollinator parents was moderate (= 0.35 and = 0.39, respectively). These results indicate that sorgoleone exudation is primarily driven by additive genetic effects, but dominance effects are important for optimum production. These findings indicate that selection for increased sorgoleone root exudation among elite, adapted grain sorghum hybrids and inbred should be effective.

Anthroponics: Application and effects on growth of parsley, rhipsalis, coriander, and basil fed with urine fertiliser

Urine has emerged as a promising nutrient-rich waste stream suitable for plant fertigation. Biological nitrification in a membrane bioreactor offers an effective method for producing liquid fertiliser from urine, extracting essential nutrients into a final product. Despite the increasing interest in hydroponics and urban horticulture, research exploring the efficacy of urine-derived fertilisers remains scarce. This study employed three growing systems, including nutrient film technique open channels in outdoor setup, pot-drench under glasshouse conditions, and deep-water culture (DWC) under laboratory conditions to investigate the efficiency of urine-derived fertiliser compared to commercial fertilisers. The results demonstrated comparable growth responses in parsley, rhipsalis, coriander, and basil, as demonstrated by the analysis of several parameters including biomass, stem numbers and length, and nutritional composition in shoots and roots. In conclusion, urine-derived fertilisers showed promising potential as a sustainable alternative to synthetic fertilisers, laying the foundation for the development of a circular economy of nutrients in agriculture.

Wheat genetic resources have avoided disease pandemics, improved food security, and reduced environmental footprints: A review of historical impacts and future opportunities.

The use of plant genetic resources (PGR)-wild relatives, landraces, and isolated breeding gene pools-has had substantial impacts on wheat breeding for resistance to biotic and abiotic stresses, while increasing nutritional value, end-use quality, and grain yield. In the Global South, post-Green Revolution genetic yield gains are generally achieved with minimal additional inputs. As a result, production has increased, and millions of hectares of natural ecosystems have been spared. Without PGR-derived disease resistance, fungicide use would have easily doubled, massively increasing selection pressure for fungicide resistance. It is estimated that in wheat, a billion liters of fungicide application have been avoided just since 2000. This review presents examples of successful use of PGR including the relentless battle against wheat rust epidemics/pandemics, defending against diseases that jump species barriers like blast, biofortification giving nutrient-dense varieties and the use of novel genetic variation for improving polygenic traits like climate resilience. Crop breeding genepools urgently need to be diversified to increase yields across a range of environments (>200 Mha globally), under less predictable weather and biotic stress pressure, while increasing input use efficiency. Given that the ~0.8 m PGR in wheat collections worldwide are relatively untapped and massive impacts of the tiny fraction studied, larger scale screenings and introgression promise solutions to emerging challenges, facilitated by advanced phenomic and genomic tools. The first translocations in wheat to modify rhizosphere microbiome interaction (reducing biological nitrification, reducing greenhouse gases, and increasing nitrogen use efficiency) is a landmark proof of concept. Phenomics and next-generation sequencing have already elucidated exotic haplotypes associated with biotic and complex abiotic traits now mainstreamed in breeding. Big data from decades of global yield trials can elucidate the benefits of PGR across environments. This kind of impact cannot be achieved without widescale sharing of germplasm and other breeding technologies through networks and public-private partnerships in a pre-competitive space.

Access the performance of nitrification in an activated sludge reactor for seafood wastewater treatment: Experiment on the SBR model at the lab-scale

Abstract A major challenge in wastewater treatment system design is optimizing the nitrification process in activated sludge reactors, especially in the seafood industry with high concentration of organic matter, fat, oil, and nitrogen. However, in traditional seafood wastewater treatment systems, nitrogen removal is limited by the ratio C:N:P ≈ 100:5:1. With the experiment of the Sequencing Batch Reactor model, the evaluation of biological nitrification reaction is conducted based on the following parameters: organic loading rate, removing efficiency of ammonia - nitrogen, and nitrification rate. By using pre-treatment seafood processing wastewater with a C/N ratio of 5-6, these parameters were determined through an operating biological reactor with F/M from 0.16 to 0.2g BOD5/g MLVSS.d. In terms of the performance of the model, when optimizing the nitrification process, the efficiency removal reaches 78.3-80.0% for BOD5 and 93.9-94.5% for NH4-N. After that, the nitrification process occurred after 30 minutes of reaction phase, reached its maximum rate after 2 hours with nitrification rate from 0.04 to 0.08 g Nox/g MLVSS.d and then maintained for about 1 hour. Moreover, for an optimal nitrification process, the alkaline consumption of the model should be in the range 7.05-7.18 mg CaCO3/mg N.

Transformation and drive mechanism of nitrogen functional genes at estuaries in dry and wet seasons

The nitrogen cycle plays a vital role in maintaining ecological health and biodiversity. In aquatic systems, nitrogen transformation genes significantly contribute to biological nitrogen cycling. Although the function of these genes is known to be influenced by environmental factors, there is limited research exploring the relationship between nitrogen transformation genes and environmental factors. Therefore, the correlations, between nitrogen transformation genes and environmental factors, were investigated at the estuaries of Chaohu lake (China) in different seasons. The results showed that the values of temperature, pH, organic compounds, nitrogen, and dissolved oxygen were higher in dry season, whereas the abundance of the genes was lower in dry season. In addition, the abundance of the anaerobic ammoxidation gene was much lower than the nitrification gene and denitrification gene. The results indicated that biological nitrification and denitrification were the primary mechanisms for nitrogen removal at estuaries in different seasons, and the reduction of nitric oxide may be a limiting step in the denitrification process. The Co-occurrence Network and Mantel test indicated that, during the dry season, the temperature was the primary driver of ammonification and nitrification functions, the NO3− and NO2− were the primary drivers of denitrification, and the total nitrogen (TN) and NH4+ were the main drivers of anaerobic ammonia oxidation. During the wet season, the dissolved oxygen was the primary driver of ammonification and nitrification functions, the chemical oxygen demand was the primary driver of denitrification, and the TN was the main driver of anaerobic ammonia oxidation. This study provides valuable insights into nitrogen cycling in surface water, contributing to a better understanding of this important process.

Research Progress Related to Sorghum Biological Nitrification Inhibitors

To meet the growing population’s demand for food, humans have introduced large amounts of nitrogen fertilizers into agricultural systems, resulting in highly nitrified environments in most farmland soils. In highly nitrified environments, the application of nitrogen fertilizer easily leads to the formation of nitrate (NO3−) and subsequent leaching, resulting in very low utilization rates. Moreover, nitrogen loss can cause harm to both the environment and human health, making it necessary to inhibit the nitrification process. Nitrification inhibitors can suppress nitrification, and inhibitors derived biologically from plant roots are gaining attention due to their low cost and environmental friendliness. Sorghum, as a crop capable of growing in arid environments, holds economic value and also possesses the ability to secrete biological nitrification inhibitors. This article utilizes sorghum as a case study to review different types of BNIs (MHPP, sorgoleone, and sakuranetin), their mechanisms of inhibition, and influencing factors. This article summarizes the contributions of these inhibitors in reducing N2O emissions and increasing food production, while also providing insight into future research directions for sorghum’s biological nitrification inhibitors in terms of agricultural production efficiency. BNIs are expected to play an important role in improving agricultural production and reducing environmental pollution.

An Overview of N2O Emissions from Cropping Systems and Current Strategies to Improve Nitrogen Use Efficiency

Arable soils significantly contribute to atmosphere pollution through N2O emissions due to the massive use of N-based fertilizers and soil managements. N2O formation in the soil occurs mainly through nitrification and denitrification processes, which are influenced by soil moisture, temperature, oxygen concentration, pH, and the amount of available organic carbon and nitrogen. This review synthetically presents the mechanisms of N2O formation and emission in arable land and some of the current strategies to improve crop nutrient use efficiency. Biological nitrification inhibitor-based agronomic strategies are also presented as future prospects for the sustainable management of crops, which is missing in most of the reviews.

High rhizospheric ammonium levels in Sorghum halepense (johnsongrass) suggests nitrification inhibition potential

AbstractPlants, such as sorghum (Sorghum bicolor), have been shown to secrete root exudates involved in biological nitrification inhibition (BNI), an ability to suppress the conversion of ammonium to nitrate and thereby minimize its loss. Johnsongrass (Sorghum halepense), a weedy relative of cultivated sorghum, may also possess BNI potential, but little is known in this regard. Here, we conducted a field survey at seven different sites in Southeast Texas to determine this evolutionary trait of johnsongrass in different soil environments. It was found that johnsongrass rhizosphere retains high levels (>60%) of ammonium within the total available N (ammonium + nitrate). Furthermore, the degree of ammonium retention by johnsongrass rhizosphere was significantly greater (up to 40%) in the roadside habitat compared to cultivated fields. The high ammonium retention potential by johnsongrass may explain, in part, their persistence and dominance, especially in marginal environments.Core Ideas Nitrogen is a limiting nutrient for plant growth, and nitrification causes loss of nitrogen. Ammonium retention was higher in roadside johnsongrass biotypes compared to that of cropland biotypes. The high rhizoshpheric ammonium retention by johnsongrass may explain, at least in part, its invasiveness. This trait could be further investigated and integrated into modern sorghum cultivars.

Benefits and limits of biological nitrification inhibitors for plant nitrogen uptake and the environment

Plant growth and high yields are secured by intensive use of nitrogen (N) fertilizer, which, however, pollutes the environment, especially when N is in the form of nitrate. Ammonium is oxidized to nitrate by nitrifiers, but roots can release biological nitrification inhibitors (BNIs). Under what conditions does root-exudation of BNIs facilitate nitrogen N uptake and reduce pollution by N loss to the environment? We modeled the spatial–temporal dynamics of nitrifiers, ammonium, nitrate, and BNIs around a root and simulated root N uptake and net rhizosphere N loss over the plant’s life cycle. We determined the sensitivity of N uptake and loss to variations in the parameter values, testing a broad range of soil–plant-microbial conditions, including concentrations, diffusion, sorption, nitrification, population growth, and uptake kinetics. An increase in BNI exudation reduces net N loss and, under most conditions, increases plant N uptake. BNIs decrease uptake in the case of (1) low ammonium concentrations, (2) high ammonium adsorption to the soil, (3) rapid nitrate- or slow ammonium uptake by the plant, and (4) a slowly growing or (5) fast-declining nitrifier population. Bactericidal inhibitors facilitate uptake more than bacteriostatic ones. Some nitrification, however, is necessary to maximize uptake by both ammonium and nitrate transporter systems. An increase in BNI exudation should be co-selected with improved ammonium uptake. BNIs can reduce N uptake, which may explain why not all species exude BNIs but have a generally positive effect on the environment by increasing rhizosphere N retention.

Subsurface wastewater infiltration systems for nitrogen pollution control.

Subsurface wastewater infiltration systems (SWISs) are suggested to be a cost-effective and environmentally friendly method for sewage treatment. However, a comprehensive summary of the relevant mechanisms and optimization methods for nitrogen (N) removal in SWIS is currently lacking. In this review, we first summarize the N transformation mechanisms in SWIS. The impact of operational parameters on the N removal efficiency is then delineated. To enhance pollutant removal and minimize resource wastage, it is advisable to maintain a wet-dry ratio of 1:1 and a hydraulic loading rate of 8-10cm/day. The organic load should be determined based on influent characteristics to optimize the balance between sewage treatment and nitrous oxide (N2O) emission. Finally, various strategies and modifications have been suggested to enhance pollutant removal efficiency and reduce N2O emissions in SWIS, such as artificial aeration, supply electron donors, and well-designed structures. Overall, greater emphasis should be placed on the design and management of SWIS to optimize their co-benefits while effectively controlling N pollution. PRACTITIONER POINTS: SWISs are often considered black boxes with their efficiency depending on hydraulic characteristics, biological characteristics, and substrate properties. Biological nitrification coupled with denitrification is considered to be the major N removal process. Increasing the reduction of N2O to the inert N2 form is a potential mechanism to mitigate global warming. Strategies such as artificial aeration, supply electron donors, and well-designed structures are suggested to improve N removal performance.

Production of ammonium nitrate for nitrogen recovery in a single bioreactor operating at pH 3

Ammonium nitrate (AN), i.e. NH4NO3, is extensively utilized in agricultural, mining, and civil construction sectors, with an annual production of approximately 16 million tons. Although the biological nitrification processes has been proven to be an important alternative to overcome the intensive energy consumption of the conventional chemical process for AN production, it necessitates ample chemical input for stable performance. This study marks the first demonstration of stable AN production from ammonium-rich wastewater employing a purely microbial-derived one-stage process, without the need for external chemical addition. This process functioned through an acidophilic ammonia-oxidizing bacteria (AOB), i.e., Candidatus (Ca.) Nitrosoglobus, which oxidized the ammonium in the feed to nitrite while simultaneously reducing the reactor pH to 3.2−3.4. Under these pH conditions, nitrite was chemically oxidized to nitrate with the provision of oxygen. Long-term bioreactor operation (>230 days) revealed consistent AN production from high ammonium wastewater at a nitrogen loading rate of 0.15 kg N/m3/d. Batch tests revealed that microbial ammonium oxidation was the rate-determining step in the overall AN production process. Further microbial enrichment and process optimization can enhance the microbial ammonium oxidation rate. In summary, the proposed acidic one-stage bioprocess presents a promising avenue for AN production from ammonium-rich wastewater.

Treatment of Wastewaters with Different Ammonium Concentrations in a Sequencing Batch Reactor by Nitritation and Denitritation Processes

In the treatment of industrial and municipal wastewaters, biological nitrification and denitrification processes have been widely applied methods. However, in recent years, experimental studies have been carried out on nitritation and denitritation processes in order to reduce the cost of wastewater treatment. In this study, the removal of synthetic wastewaters containing ammonium at various concentrations through nitritation and denitritation processes was investigated in a sequence batch reactor (SBR). The SBR was operated at a low dissolved oxygen concentration of 0.7±0.2 mg/L, while the initial pH level and temperature were kept constant at 7.5 and 25 ℃, respectively, which were below the defined optimal level for nitritation. For the initial concentrations of 100, 150, and 200 mg NH4-N/L, 91, 142, and 180 mg NOx-N were produced, respectively with the specific nitritation rates of 0.69, 0.95, and 0.81 mg NH4-N/mg MLVSS.hour. Considering the operating conditions of nitritation, approximately NO2-N/NOx-N ratio of 80% could be considered as successful with the combined effect of DO limitation and NH3 inhibition on the nitrite oxidizing bacteria. During the first days of nitritation and denitritation processes, change of nitrogen concentrations was negligible because the adaptation of organisms to the oxic and anoxic conditions. After completing nitritation stage, denitritation was carried out by using methanol as an electron donor for the initial concentrations of 91, 142, and 180 mg/L of NOx-N in 96, 120 and 264 hours of reaction times, respectively.

Inhibition profile of three biological nitrification inhibitors and their response to soil pH modification in two contrasting soils.

Up to 70% of the nitrogen (N) fertilizer applied to agricultural soils is lost through microbially mediated processes, such as nitrification. This can be counteracted by synthetic and biological compounds that inhibit nitrification. However, for many biological nitrification inhibitors (BNIs), the interaction with soil properties, nitrifier specificity, and effective concentrations are unclear. Here, we investigated three synthetic nitrification inhibitors (SNIs) (DCD, DMPP, and nitrapyrin) and three BNIs [methyl 3(4-hydroxyphenyl) propionate (MHPP), methyl 3(4-hydroxyphenyl) acrylate (MHPA), and limonene] in two agricultural soils differing in pH and nitrifier communities. The efficacies of SNIs and BNIs were resilient to short-term pH changes in the neutral pH soil, whereas the efficacy of some BNIs increased by neutralizing the alkaline soil. Among the BNIs, MHPA showed the highest inhibition and was, together with MHPP, identified as a putative AOB/comammox-selective inhibitor. Additionally, MHPA and limonene effectively inhibited nitrification at concentrations comparable to those used for DCD. Moreover, we identified the effective concentrations at which 50% and 80% of inhibition is observed (EC50 and EC80) for the BNIs, and similar EC80 values were observed in both soils. Overall, our results show that these BNIs could potentially serve as effective alternatives to SNIs currently used.

Biological mitigation of soil nitrous oxide emissions by plant metabolites.

Plant metabolites significantly affect soil nitrogen (N) cycling, but their influence on nitrous oxide (N2O) emissions has not been quantitatively analyzed on a global scale. We conduct a comprehensive meta-analysis of 173 observations from 42 articles to evaluate global patterns of and principal factors controlling N2O emissions in the presence of root exudates and extracts. Overall, plant metabolites promoted soil N2O emissions by about 10%. However, the effects of plant metabolites on N2O emissions from soils varied with experimental conditions and properties of both metabolites and soils. Primary metabolites, such as sugars, amino acids, and organic acids, strongly stimulated soil N2O emissions, by an average of 79%, while secondary metabolites, such as phenolics, terpenoids, and flavonoids, often characterized as both biological nitrification inhibitors (BNIs) and biological denitrification inhibitors (BDIs), reduced soil N2O emissions by an average of 41%. The emission mitigation effects of BNIs/BDIs were closely associated with soil texture and pH, increasing with increasing soil clay content and soil pH on acidic and neutral soils, and with decreasing soil pH on alkaline soils. We furthermore present soil incubation experiments that show that three secondary metabolite types act as BNIs to reduce N2O emissions by 32%-45%, while three primary metabolite classes possess a stimulatory effect of 56%-63%, confirming the results of the meta-analysis. Our results highlight the potential role and application range of specific secondary metabolites in biomitigation of global N2O emissions and provide new biological parameters for N2O emission models that should help improve the accuracy of model predictions.

Divergent drivers of the spatial variation in greenhouse gas concentrations and fluxes along the Rhine River and the Mittelland Canal in Germany

Lotic ecosystems are sources of greenhouse gases (GHGs) to the atmosphere, but their emissions are uncertain due to longitudinal GHG heterogeneities associated with point source pollution from anthropogenic activities. In this study, we quantified summer concentrations and fluxes of carbon dioxide (CO2), methane (CH4), nitrous oxide (N2O), and dinitrogen (N2), as well as several water quality parameters along the Rhine River and the Mittelland Canal, two critical inland waterways in Germany. Our main objectives were to compare GHG concentrations and fluxes along the two ecosystems and to determine the main driving factors responsible for their longitudinal GHG heterogeneities. The results indicated that the two ecosystems were sources of GHG fluxes to the atmosphere, with the Mittelland Canal being a hotspot for CH4 and N2O fluxes. We also found significant longitudinal GHG flux discontinuities along the mainstems of both ecosystems, which were mainly driven by divergent drivers. Along the Mittelland Canal, peak CO2 and CH4 fluxes coincided with point pollution sources such as a joining river tributary or the presence of harbors, while harbors and in-situ biogeochemical processes such as methanogenesis and respiration mainly explained CH4 and CO2 hotspots along the Rhine River. In contrast to CO2 and CH4 fluxes, N2O longitudinal trends along the two lotic ecosystems were better predicted by in-situ parameters such as chlorophyll-a concentrations and N2 fluxes. Based on a positive relationship with N2 fluxes, we hypothesized that in-situ denitrification was driving N2O hotspots in the Canal, while a negative relationship with N2 in the Rhine River suggested that coupled biological N2 fixation and nitrification accounted for N2O hotspots. These findings stress the need to include N2 flux estimates in GHG studies, as it can potentially improve our understanding of whether nitrogen is fixed through N2 fixation or lost through denitrification.

Sugarcane exudates as nitrification inhibitors; improvement of soybean nitrogen recovery and yield by reducing soil nitrification and N2O emission using 15N tracing techniques

BNI (biological nitrification inhibition) derived from root exudates is typically used in rotation cropping systems to increase the crop nitrogen efficiency (NUE). Recently, the root exudates secreted by three sugarcane varieties in Thailand have been found to inhibit the nitrification and accumulation. The objective of the study was to evaluate the effectiveness of the sugarcane root exudate on (i) soil nitrification rate and N dynamics (soil mineral N and nitrous oxide (N2O) emission) and (ii) growth, yield, and 15N recovery by soybean under greenhouse conditions. The experiment was laid out as a randomized complete block design (RCBD), with five treatments and four replications: (i) N fertilizer (Control); (ii) Control + Uthong 13 sugarcane root exudate (UT13); (iii) Control + Khon Kaen 3 sugarcane root exudate (KK3); (iv) Control + wild cane sugarcane root exudate (Spone) and (v) Control + dicyandiamide (DCD). 15N fertilizer was applied to a micro-plot for 15N recovery. Soybean was planted and fertilized at 75 kg ha−1 N as (NH4)2SO4. Soil samples were collected at 1, 3, 7, 14, 21 and 28 days after N fertilization (DANF) for pH, potential nitrification rate (PNR), NH4+, NO3− and MBN measurement at 0–15 and 15–30 cm soil depths. A gas sample was collected by the soil chamber technique for an N2O emissions study on the soil sampling date. The soybean growth was monitored at 30 and 60 DAP (days after planting) for height, leaf area, leaf area index (LAI), SCMR and dry weight (DW). At soybean harvest, seed yield, yield components and N uptake were recorded. Our study revealed that the sugarcane root exudates significantly decreased PNR up to 14 DANF and increased NH4+ content in soil and reduced commutative N2O–N fluxes after 14 DANF, compared to N treatment (p < 005). The root exudate treatments not only increased growth (total DW and LAI at 60 DAP), yield (number of pods and seeds per plant) and N uptake (17–19%) but also 15N recovery in the total plant. This confirms the capacity of BNIs from sugarcane root exudates. In conclusion, sugarcane root exudates can effectively mitigate N2O emissions and enhance soybean N uptake under greenhouse conditions.

Altitudinal patterns of alpine soil ammonia-oxidizing community structure and potential nitrification rate.

Nitrogen availability limits the net primary productivity in alpine meadows on the Qinghai-Tibetan Plateau, which is regulated by ammonia-oxidizing microorganisms. However, little is known about the elevational patterns of soil ammonia oxidizers in alpine meadows. Here, we investigated the potential nitrification rate (PNR), abundance, and community diversity of soil ammonia-oxidizing microorganisms along the altitudinal gradient between 3,200 and 4,200 m in Qinghai-Tibetan alpine meadows. We found that both PNR and amoA gene abundance declined from 3,400 to 4,200 m but lowered at 3,200 m, possibly due to intense substrate competition and biological nitrification inhibition from grasses. The primary contributors to soil nitrification were ammonia-oxidizing archaea (AOA), and their proportionate share of soil nitrification increased with altitude in comparison to ammonia-oxidizing bacteria (AOB). The alpha diversity of AOA increased by higher temperature and plant richness at low elevations, while decreased by higher moisture and low legume biomass at middle elevations. In contrast, the alpha diversity of AOB increased along elevation. The elevational patterns of AOA and AOB communities were primarily driven by temperature, soil moisture, and vegetation. These findings suggest that elevation-induced climate changes, such as shifts in temperature and water conditions, could potentially alter the soil nitrification process in alpine meadows through changes in vegetation and soil properties, which provide new insights into how soil ammonia oxidizers respond to climate change in alpine meadows.IMPORTANCEThe importance of this study is revealing that elevational patterns and nitrification contributions of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) communities were primarily driven by temperature, soil moisture, and vegetation. Compared to AOB, the relative contribution of AOA to soil nitrification increased at higher elevations. The research highlights the potential impact of elevation-induced climate change on nitrification processes in alpine meadows, mediated by alterations in vegetation and soil properties. By providing new insights into how ammonia oxidizers respond to climate change, this study contributes valuable knowledge to the field of microbial ecology and helps predict ecological responses to environmental changes in alpine meadows.