Biogeographic Units Research Articles

Research on longevity and associated age data of South American anurans: trends, gaps and recommendations

Longevity is one of the most important characteristics in the life history of organisms. It is directly associated with growth, reproduction and age of sexual maturity. Despite this, little is known about longevity in South American anuran species, a region considered as a hotspot of world diversity. Thus, we carried out a literature review of publications on longevity of South American anurans that used the skeletochronology method to identify the main publication trends, as well as to point out the main information gaps and suggest future directions. We found clear biases when we analysed temporal, spatial and taxonomic patterns in publications on longevity: (i) studies are recent (mostly from 2015 onwards), (ii) bufonids and leptodactylids were the most studied groups, (iii) medium to large species are the most studied, (iv) species with wide geographic distribution, low risk of extinction, (v) the studies are concentrated in Brazil and Argentina, and (vi) most studies are in the Chaco biogeographical sub-region. We suggest that future work prioritizes little explored families and with high species diversity, small-bodied species, with restricted distribution, threatened with extinction, in order to expand the representation of different evolutionary lineages along the biogeographical units of South America.

Freshwater fishes of the Northeastern Mata Atlântica ecoregion, Brazil: an updated checklist with distributional patterns of a highly endemic ichthyofauna

We present an annotated and updated checklist of freshwater fish species occurring in the Northeastern Mata Atlântica ecoregion (NMAF), Eastern Brazil. A total of 305 native freshwater fish species are documented for this ecoregion, of which 210 are endemic. Distribution maps of 298 species are provided. There is a general pattern of increased sampling intensity in coastal zones, gradually diminishing towards the west as elevation increases. A bioregionalization algorithm identified four biogeographic units in the NMAF ecoregion: Northern Bioregion, Central Bioregion, Coastal Tablelands Bioregion and Southern Bioregion. The heterogeneous nature of the ichthyofauna in this area, along with the significant faunal overlap observed between NMAF and adjacent ecoregions, suggests that the approach of ecoregion delimitation may not be fully congruent with the current faunal compositions. This underscores the need for novel regionalization approaches that reinforce outcomes consistent with the diversity patterns evident within the ecoregion.

Discriminating woody species assemblages from National Forest Inventory data based on phylogeny in Georgia.

Classifications of forest vegetation types and characterization of related species assemblages are important analytical tools for mapping and diversity monitoring of forest communities. The discrimination of forest communities is often based on β-diversity, which can be quantified via numerous indices to derive compositional dissimilarity between samples. This study aims to evaluate the applicability of unsupervised classification for National Forest Inventory data from Georgia by comparing two cluster hierarchies. We calculated the mean basal area per hectare for each woody species across 1059 plot observations and quantified interspecies distances for all 87 species. Following an unspuervised cluster analysis, we compared the results derived from the species-neutral dissimilarity (Bray-Curtis) with those based on the Discriminating Avalanche dissimilarity, which incorporates interspecies phylogenetic variation. Incorporating genetic variation in the dissimilarity quantification resulted in a more nuanced discrimination of woody species assemblages and increased cluster coherence. Favorable statistics include the total number of clusters (23 vs. 20), mean distance within clusters (0.773 vs. 0.343), and within sum of squares (344.13 vs. 112.92). Clusters derived from dissimilarities that account for genetic variation showed a more robust alignment with biogeographical units, such as elevation and known habitats. We demonstrate that the applicability of unsupervised classification of species assemblages to large-scale forest inventory data strongly depends on the underlying quantification of dissimilarity. Our results indicate that by incorporating phylogenetic variation, a more precise classification aligned with biogeographic units is attained. This supports the concept that the genetic signal of species assemblages reflects biogeographical patterns and facilitates more precise analyses for mapping, monitoring, and management of forest diversity.

Marine introgressions and Andean uplift have driven diversification in neotropical Monkey tree frogs (Anura, Phyllomedusinae).

The species richness in the Neotropics has been linked to environmental heterogeneity and a complex geological history. We evaluated which biogeographic processes were associated with the diversification of Monkey tree frogs, an endemic clade from the Neotropics. We tested two competing hypotheses: the diversification of Phyllomedusinae occurred either in a "south-north" or a "north-south" direction in the Neotropics. We also hypothesized that marine introgressions and Andean uplift had a crucial role in promoting their diversification. We used 13 molecular markers in a Bayesian analysis to infer phylogenetic relationships among 57 species of Phyllomedusinae and to estimate their divergence times. We estimated ancestral ranges based on 12 biogeographic units considering the landscape modifications of the Neotropical region. We found that the Phyllomedusinae hypothetical ancestor range was probably widespread throughout South America, from Western Amazon to Southern Atlantic Forest, at 29.5 Mya. The Phyllomedusines' ancestor must have initially diverged through vicariance, generally followed by jump-dispersals and sympatric speciation. Dispersal among areas occurred mostly from Western Amazonia towards Northern Andes and the South American diagonal of dry landscapes, a divergent pattern from both "south-north" and "north-south" diversification hypotheses. Our results revealed a complex diversification process of Monkey tree frogs, occurring simultaneously with the orogeny of Northern Andes and the South American marine introgressions in the last 30 million years.

Extending Grime's CSR model to predict plant demographic responses across resource availability gradients: evidence from the patagonian steppes

Sexual reproduction, growth, and survival are crucial demographic strategies for plant population viability. Here, we propose a conceptual model predicting demographic responses of species based on their ecological strategy and the heterogeneity of environmental conditions within a biogeographical unit and then applied it to a case study from a 5˚ latitudinal gradient in the Patagonian steppes. We also aim to disentangle genetic from environmental effects on demographic responses. We performed in situ and common garden experiments with two species from six local populations of the Occidental Phytogeographical District of the Patagonian steppes. Species differ in key ecological traits, and thus fit into Grime's model for evolutionary strategies in plants: one as competitive species and the other as stress‐tolerant species. We calculated population growth rate (λ) and performed elasticity analyses to compare the contribution of each demographic strategy to population fitness between species and among local populations distributed along 600 km latitudinal gradient with differences in mean annual precipitation (MAP). We highlight four results. First, the competitive species change from sexual reproduction to growth as MAP increases. Second, the stress‐tolerant species relied on growth and survival along the MAP gradient. Third, interannual variation in resource availability modulated demographic responses for both strategies. Fourth, based on the comparison of the in situ and common garden experiments, we submit that demographic responses were genetically driven. Our study shows that demographic responses can be roughly predicted by the ecological strategy across environmental gradients. We show that differences arise not only between species, but also were genetically driven differences within species among local populations. Scaling up plant‐level responses to population‐level dynamics allows for a process‐based understanding of current and future biogeographical species organization. Furthermore, conservation and restoration efforts should be guided by demographic strategies underlying population viability.

Human disturbance and habitat structure drive eurasian otter habitat selection in heavily anthropized river basins

Assessing habitat selection is essential to protecting threatened species but also to understand what factors influence species that, although globally not currently in decline, act as flagships of their ecosystems and remain highly vulnerable to human impacts, such as the Eurasian otter. This paper examines otter habitat selection at the river reach scale in two heavily anthropized river basins. Both river basins encompass a wide spectrum of human pressures and biogeographic units, which offers an excellent opportunity to assess otter responses to anthropogenic activities in different scenarios. Through two modelling approaches (structure-agnostic way and a priori hypothesized habitat factors) we demonstrate that otters currently inhabiting these human-dominated landscapes show a trade-off between a preference for highly productive areas and for well-structured and safe areas. We suggest that habitat simplification and human disturbance, which were of minor relevance to the dramatic decline of otter populations in the 20th century, are emerging as potential threats in the context of worldwide increasing land use intensification. Furthermore, we found that otter habitat requirements were remarkably more stringent for breeding site selection than for occurrence, particularly concerning variables related to human disturbance. The results of this work provide tools for integrating ecological criteria oriented to effective otter conservation into river management in human-dominated landscapes, as well as serving as methodological support for lowland river restorations. Our results suggest that long-term otter conservation in anthropized rivers will depend on ensuring the availability of habitat patches that maintain sufficient structural complexity away from intensely outdoor recreational activities.

Biogeographic response to major extinction events: The case of Triassic bivalves

Mass extinctions decimate the biota causing the disappearance of existing palaeobiogeographical patterns, which is not surprising given that palaeobiogeographical units are usually established on the basis of endemic taxa and these are the most affected in global crisis events. This paper deals with the evolution of the biogeographic pattern shown by bivalve genera in response to the end-Permian extinction event. From a network analysis (based on Simpson's and Bray-Curtis' similarity indices) and an Occurrence Ratio Profile, the Early Triassic is recognized as a time of general biogeographic homogeneity. The Middle Triassic shows a clear differentiation, with the evolution of many new genera, and an increase in endemicity, which reaches a maximum by the Carnian. During the Norian-Rhaetian the main biogeographic biochoremas appear well differentiated. Unlike other invertebrates, like brachiopods, bivalves show generally high similarity values between biogeographic units, and in this particular case study, Early Triassic biogeographic units appear more related to each other than to the corresponding Middle or Late Triassic units.

Machine learning and phylogenetic models identify predictors of genetic variation in Neotropical amphibians

AbstractAimIntraspecific genetic variation is key for adaptation and survival in changing environments and is known to be influenced by many factors, including population size, dispersal and life‐history traits. We investigated genetic variation within Neotropical amphibian species to provide insights into how natural history traits, phylogenetic relatedness, climatic and geographic characteristics can explain intraspecific genetic diversity.LocationNeotropics.TaxonAmphibians.MethodsWe assembled data sets using open‐access databases for natural history traits, genetic sequences, phylogenetic trees, climatic and geographic data. For each species, we calculated overall nucleotide diversity (π) and tested for isolation by distance (IBD) and isolation by environment (IBE). We then identified predictors of π, IBD and IBE using random forest (RF) regression or RF classification. We also fitted phylogenetic generalized linear mixed models (PGLMMs) to predict π, IBD and IBE.ResultsWe compiled 4052 mitochondrial DNA sequences from 256 amphibian species (230 frogs and 26 salamanders), georeferencing 2477 sequences from 176 species that were not linked to occurrence data. RF regressions and PGLMMs were congruent in identifying range size and precipitation (σ) as the most important predictors of π, influencing it positively. RF classification and PGLMMs identified minimum elevation as an important predictor of IBD; most species without IBD tended to occur at higher elevations. Maximum latitude and precipitation (σ) were the best predictors of IBE, and most species without IBE occur at lower latitudes and in areas with more variable precipitation.Main ConclusionsThis study identified predictors of genetic variation in Neotropical amphibians using both machine learning and phylogenetic methods. This approach was valuable to determine which predictors were congruent between methods. We found that species with small ranges or living in zones with less variable precipitation tended to have low genetic diversity. We also showed that Western Mesoamerica, Andes and Atlantic Forest biogeographic units harbour high diversity across many species that should be prioritized for protection. These results could play a key role in the development of conservation strategies for Neotropical amphibians.

Doubling the known diversity of a remote island fauna: marine bivalves of the Juan Fernández and Desventuradas oceanic archipelagos (Southeastern Pacific Ocean).

Juan Fernández and Desventuradas are two oceanic archipelagos located in the southeastern Pacific Ocean far off the Chilean coast that received protected status as marine parks in 2016. Remoteness and access difficulty contributed to historically poor biodiversity sampling and limited associated research. This is particularly noticeable for bivalves, with most prior regional publications focused on single taxa or un-illustrated checklists. This study investigates marine bivalves collected between the intertidal and 415 m depth during (1) the 1997 IOC97 expedition aboard the M/V Carlos Porter, with special focus on scuba-collected micro-mollusks of both archipelagos, (2) two expeditions by the R/V Anton Bruun (Cruise 12/1965 and Cruise 17/1966), and (3) Cruise 21 of USNS Eltanin under the United States Antarctic Program, which sampled at Juan Fernández in 1965. Also, relevant historical material of the British H.M.S. Challenger Expedition (1873-1876), the Swedish Pacific Expedition (1916-1917), and by German zoologist Ludwig H. Plate (1893-1895) is critically revised. A total of 48 species are recognized and illustrated, including 19 new species (described herein) and six other potentially new species. The presence of two species mentioned in the literature for the region (Aulacomya atra and Saccella cuneata) could not be confirmed. The genera Verticipronus and Halonympha are reported for the first time from the Eastern Pacific, as are Anadara and Condylocardia from Chilean waters. Lectotypes are designated for Arca (Barbatia) platei and Mytilus algosus. These findings double the number of extant bivalve species known from the Juan Fernández and Desventuradas archipelagos, highlighting the lack of attention these islands groups have received in the past. A high percentage of species endemic to one or both archipelagos are recognized herein, accounting for almost 78% of the total. The newly recognized level of bivalve endemism supports the consideration of Juan Fernández and Desventuradas as two different biogeographic units (Provinces or Ecoregions) of the Eastern Pacific Ocean.

Goatfishes (Teleostei: Mullidae) of the Socotra Archipelago: diversity and distributional biogeography, with a new record of Parupeneus heptacantha

The diversity of goatfishes from the Socotra Archipelago is documented for the first time. The distributional biogeography of the family in the Arabian region is analyzed and thoroughly discussed in the context of the western Indian Ocean. Twelve species of two genera, Mulloidichthys and Parupeneus, are positively recorded, including a new record for Parupeneus heptacantha and a visual recording of Upeneus heemstra, pending further documentation. The Socotra Archipelago thus hosts 13 of the 31 species found in Arabia. This degree of species richness is comparable to other Arabian ecoregions. With only one species, Upeneus species richness stands out as very low. Biogeographically, three main Arabian units are identified: a "Red Sea unit", a "Gulf unit", and a "Socotra unit". The former two units are strongly characterized by endemics, notably within Upeneus, while there are no species endemic to the latter. The "Socotra unit", comprised of the Socotra Archipelago, eastern Gulf of Aden, and southern Oman, resembles more strongly all sites of the western Indian Ocean than the Arabian sites. The "Gulf unit" is the most distant to all other sites. These units do not cluster to a discrete "pan-Arabian" region within the wider western Indian Ocean. The Mullidae thus strongly contrast overall biogeographic patterns of coastal fishes and reef-building corals, which cumulatively suggest that Arabia forms a discrete biogeographic unit within the Indian Ocean. The study serves further analyses of the contrasting biogeographies of major coastal fish families in Arabia, with a focus on the role of the southern Arabian upwelling areas.

Projectile point variability from a biogeographical approach in northwestern Patagonia, Argentina

Our objective is to analyse the relationship among the availability, selection, and use of raw materials suitable for knapping with projectile points from the Late Holocene of northwestern Patagonia. We analyse differences in the raw material used to make projectile points according to the techno-morphological characteristics. Non-stemmed projectile points predominate in all the biogeographic units. The size and weight of the projectile points in Patagonia duplicate those from Altoandina and Monte. We conclude that there was a coexistence of two weapons systems related to hunting, the bow and arrow, together with the use of darts.

Species Delimitation in a Polyploid Group of Iberian Jasione (Campanulaceae) Unveils Coherence between Cryptic Speciation and Biogeographical Regionalization.

Groups with morphological stasis are an interesting framework to address putative cryptic species that may be hidden behind traditional taxonomic treatments, particularly when distribution ranges suggest disjunct and environmentally heterogeneous biogeographic patterns. New hypotheses of delimitation of evolutionary independent units can lead to the identification of different biogeographic processes, laying the foundation to investigate their historical and ecological significance. Jasione is a plant genus with a distribution centered in the Mediterranean basin, characterized by significant morphological stasis. Within the western Mediterranean J. gr. crispa species complex, J. sessiliflora s.l. and allied taxa form a distinct group, occupying environmentally diverse regions. At least two ploidy levels, diploid and tetraploid, are known to occur in the group. The internal variability is assessed with phylogenetic tools, viz. GMYC and ASAP, for species delimitation. The results are compared with other lines of evidence, including morphology and cytology. The fitting of distribution patterns of the inferred entities to chorological subprovinces is also used as a biogeographical and environmental framework to test the species hypothesis. Despite the scarcity of diagnostic morphological characters in the group, phylogenetic delimitation supports the description of at least one cryptic species, a narrow endemic in the NE Iberian Peninsula. Moreover, the results support the segregation of a thermophilic group of populations in eastern Iberia from J. sessiliflora. Ploidy variation from a wide geographical survey supports the systematic rearrangement suggested by species delimitation. Taxonomic reorganization in J. sessiliflora s.l. would allow ecological interpretations of distribution patterns in great accordance with biogeographical regionalization at the subprovince level, supporting geobotanical boundaries as a framework to interpret species ecological coherence of cryptic lineages. These results suggest that species differentiation, together with geographic isolation and polyploidization, is associated with adaptation to different environments, shifting from more to less thermophilic conditions. Thus, the recognition of concealed evolutionary entities is essential to correctly interpret biogeographical patterns in regions with a complex geologic and evolutionary history, such as the Mediterranean basin, and biogeographical units emerge as biologically sound frameworks to test the species hypothesis.

Biogeographic patterns of the freshwater fishes from the state of Espírito Santo, eastern Brazil

ABSTRACT Biogeographic studies offer valuable insights into the origin, distribution and extinction of biodiversity. As such, this study aims to identify patterns of diversity and distribution of freshwater ichthyofauna in the state of Espírito Santo, to delineate biogeographic units and to propose a hypothesis of area relationship. A database containing information on 123 fish species occurrences was compiled to conduct analyses of species richness interpolation, bioregionalization, sampling effort interpolation, endemism, and a parsimony analysis of endemism. The sampling effort in Espírito Santo is uneven, with higher representativeness of sampling sites in the highlands. Six freshwater ichthyofauna bioregions were identified, along with three major areas of increased species richness, two consensus areas of endemism and three groups of basins. The central basins of the state are characterized by a marked presence of endemic species. The southern basins also stand out as an area of endemism and density of species typical of mountainous environments, such as loricariids; they are also characterized by a significant faunal overlap with the Rio Paraíba do Sul basin. The results of this biogeographic evaluation reinforce the perception that the watersheds of the state of Espírito Santo have a diverse and characteristic freshwater fish fauna, with well-defined biogeographic units.

Palaeobiogeography of NE Atlantic archipelagos during the last Interglacial (MIS 5e): A molluscan approach to the conundrum of Macaronesia as a marine biogeographic unit

In order to understand the complex evolutionary processes and patterns that explain current island biodiversity, large datasets and long-term analysis are required. The Last Interglacial (LIG) was one of the warmest interglacials during the last million years. How species mobility changed during this period in the Macaronesia geographical region has long intrigued scientists. It is well established that the northward range expansion of tropical species occurred in the Macaronesian geographical region, but as a marine biogeographic unit, the term “Macaronesia” has not gained a consensus among the scientific community. For the first time, a thoroughly revised and updated checklist is presented for shallow-water marine molluscs from the Atlantic and Mediterranean during the LIG. Based on these wide ranging data, the status of Macaronesia as a marine biogeographic unit during the LIG was examined and our scientific understanding of how this unit evolved is improved. The analysis shows that during the LIG, the molluscan faunas of the Canary and Cabo Verde archipelagos were part of the same tropical Late Pleistocene Mediterranean West-African Province, whereas those in the Azores, Madeira and Selvagens archipelagos would be included in the subtropical Late Pleistocene French-Iberian Province. This contrasts with the present-day scenario, where the subtropical/warm temperate Azores and “Webbnesia” marine ecoregions (Lusitanian province) are biogeographically distinct from the Cabo Verde biogeographic subprovince, which in turn belongs to the West African Tropical biogeographic province. A further analysis of the coherence of “Macaronesia” as a marine biogeographical unit was accomplished by coupling Pliocene, LIG, and present-day data, showing that the term “Macaronesia”, and for the marine realm, should only be used in a geographical connotation.

Agricultural drivers of field margin plant communities are scale-dependent

In recent decades, agricultural intensification has led to a strong decline in biodiversity. Field margins act as shelters and dispersal corridors for biodiversity in highly disturbed landscapes, and are critical to the maintenance of ecosystem services. However, they are also impacted by agricultural practices in neighboring fields. Agricultural impacts are often studied at field to landscape scales, and rarely across biogeographic regions. One of the challenges in large-scale studies is the lack of standardized monitoring schemes including both biodiversity and accurate estimation of agricultural practices. Here, we take advantage of a national monitoring scheme in 462 sites in France, to assess the effects of agricultural practices on field margin flora at different extents and resolutions. We used spatial simultaneous autoregressive and generalized dissimilarity models to assess the response of plant richness and composition to climatic, soil and landscape conditions, and to agricultural (fertilization, herbicides) and margin management drivers. Analyses were repeated at the site-level, 40 and 75 km resolutions, and at regional and national extents. We found that the impact of agricultural practices on species richness was most important at the site-level, whereas climate and crop diversity became more important at the 75 km resolution. Compositional variations responded differently, with climate being more important at the site-level, and fertilization and crop diversity at the coarsest resolution. There was a strong variation in the variance explained by models among regions, but climate effects were weaker within biogeographic units compared to the national level, and different agricultural practices stood out as influential in different regions, suggesting that the regional context is fundamental in determining plant community structure. To efficiently conserve biodiversity, we therefore recommend the implementation of agricultural measures adapted to each region.

Latitudinal distribution of skeleton shrimps (Amphipoda, Caprellidae) in artificial habitats throughout the eastern South Pacific coast of Peru

ABSTRACT Biodiversity tends to decrease poleward and increase towards the equator. However, these patterns remain unknown for many invertebrate taxa throughout Peru's eastern South Pacific coast, particularly for caprellid crustaceans which are conspicuous in artificial habitats. Three biogeographical units have been proposed for the Peruvian coast: Panamic and Humboldt provinces with a transition zone in between, but a few invertebrates support this classification. We evaluated if the diversity of caprellids decreases towards high latitudes and if the assemblages of caprellids depicted the biogeographic zonation proposed for the Peruvian coast. From 15th to 31st October 2021, caprellids were collected from biofouling communities colonizing boat hulls, buoys, and ropes throughout the Peruvian coast (3.74°–17.99° S). The caprellid assemblage consisted on six species: Caprella penantis [sensu lato], C. penantis f. gibbosa, C. equilibra, C. scaura, Paracaprella pusilla, and Deutella venenosa. Overall, caprellids' abundance, species richness, and diversity decreased southwards. Specific caprellid assemblages showed affinities for each of the three biogeographical units. The dissimilarity of the caprellid assemblages increased at approximately every one degree of latitude. Although artificial substrates can alter biodiversity patterns, caprellids showed the canonical pattern of high diversity towards the equator and resembled the biogeographic zonation proposed for the Peruvian coast.

RANGE EXPANSION IN THE GEOGRAPHIC DISTRIBUTION OF Xenodon angustirostris PETERS, 1864: A NEW LOCALITY FOR THE COLOMBIAN CARIBBEAN ECOREGION

The false mapaná or false Fer-de-Lance snakes of the genus Xenodon are cryptic, opisthoglyphous, oviparous snakes, rare and poorly represented in biological collections. Hence, the breadth of their distribution ranges is not well delimited. Herein, we extend the geographic distribution range of Xenodon angustirostris based on the discovery of a specimen from the western slope of the Serranía del Perijá, department of La Guajira, Colombia. This new record represents the northernmost locality for the species distribution, adds a new ecosystem and habitat to those previously reported, and provide new evidence that fed the discussion about hypothetical biogeographic units stated for the Colombian Caribbean.

Metagenomic Study of Fungal Microbial Communities in Two PDO Somontano Vineyards (Huesca, Spain): Effects of Age, Plant Genotype, and Initial Phytosanitary Status on the Priming and Selection of their Associated Microorganisms.

The study of microbial communities associated with different plants of agronomic interest has allowed, in recent years, to answer a number of questions related to the role and influence of certain microbes in key aspects of their autoecology, such as improving the adaptability of the plant host to different abiotic or biotic stresses. In this study, we present the results of the characterization, through both high-throughput sequencing and classical microbiological methods, of the fungal microbial communities associated with grapevine plants in two vineyards of different ages and plant genotypes located in the same biogeographical unit. The study is configured as an approximation to the empirical demonstration of the concept of "microbial priming" by analyzing the alpha- and beta-diversity present in plants from two plots subjected to the same bioclimatic regime to detect differences in the structure and taxonomic composition of the populations. The results were compared with the inventories of fungal diversity obtained by culture-dependent methods to establish, where appropriate, correlations between both microbial communities. Metagenomic data showed a differential enrichment of the microbial communities in the two vineyards studied, including the populations of plant pathogens. This is tentatively explained due to factors such as the different time of exposure to microbial infection, different plant genotype, and different starting phytosanitary situation. Thus, results suggest that each plant genotype recruits differential fungal communities and presents different profiles of associated potential microbial antagonists or communities of pathogenic species.

BIOREALM—An ontology of comparative biogeography: New insights into the semantics of biodiversity conservation

AbstractAimWe aimed to apply ontological techniques to address semantic ambiguities in protected area and conservation informatics. By doing so, we aimed to create a coherent, machine‐actionable semantic representation of the biogeographic areas (which often overlap protected areas) to support more efficient and standardized informatics, supporting research and decision‐making. We present BIOREALM, the first informatic ontology for comparative biogeography.LocationGlobal.TaxonAny taxon can be integrated in BIOREALM.MethodsWe convert a cladogram of biogeographic areas—generated by a process known as bioregionalization—into a series of ontological classes. Areas of endemism are treated as formal objects related by hierarchical relationships and constrained by a condition of monophyly. We use semantic web approaches to extend the Environment Ontology (ENVO) with classes for (often semantically confounded) biogeographic entities, including biogeographic areas, areas of endemism and endemic areas. We applied this approach to a bioregionalization of Australia as a case study. In all, 20 subregions which are part of the Austral Bioregionalisation Atlas have been selected for the study and integrated in BIOREALM.ResultsWe have created an ontology—formatted in the Web Ontology Language and adhering to the practices of the Open Biomedical and Biological Ontology Foundry—which provides a rigorous, extensible and machine‐actionable framework that can improve biogeographic analyses and interoperability between systems. One main class and 20 individuals per class were implemented.Main ConclusionsBIOREALM encodes a model‐theoretic view of endemism using semantic web approaches, offering new avenues to express and analyse biogeographic units. This approach offers a means to identify monophyletic biogeographic areas for conservation, based on specific combinations of monophyletic endemic taxa. Such an ontology provides knowledge representation solutions which supports interoperability along the FAIR (Findable, Accessible, Interoperable, Reusable) principles, thus fostering more consistent ecological informatics.

Land use and systematic survey in the study of hunter-gatherers from northwestern Patagonia, Argentina

In this paper, we focus on the results of the archaeological research in the Diamante Valley, the southernmost limit of the expansion of agriculture, sedentary societies, and the Inka empire (Fig. 1). We conducted the first fieldwork in this area involving random surface sampling, followed by test pits in open-air sites. Our analyses show changes in the settlement pattern of hunter-gatherer societies. During the first part of the Late Holocene (3000–1500 years BP), hunter-gatherers used the highlands and the piedmont seasonally. The archaeological evidence suggests a context of resource abundance and frequent movements from one patch of resources to the other in both biogeographic units. During the last part of the Late Holocene (post-1500 BP period), the increased demography made hunter-gatherers stay longer in each patch. In this later period, we observe a settlement pattern that combines, on the one hand, short-term particular tasks camps with shallow anthropogenic deposits, low artifactual density, richness, and diversity, and on the other hand, larger residential base camps with deep deposits, high artifactual density, richness, and diversity. We also find differences in how hunter-gatherers use the two biogeographic units. We find short-term non-residential camps and larger residential camps in the piedmont. Here we found versatile toolkits with abundant cores and cortex. Even though basalts are abundant in the highlands, there is a more significant amount of non-local raw materials, such as obsidians. Projectile points and scrapers dominate the assemblages, which might lead to task-specific activities such as hunting and processing guanacos. From these results, we can affirm that Late Holocene hunter-gatherer groups from Diamante Valley had an excellent knowledge of the landscape and took advantage of the different altitudinal gradients' different resources with an organized settlement pattern.