Biogeographic Patterns Research Articles

Orchid phylogenetics and evolution: history, current status and prospects.

Orchidaceae are one of the two largest families of angiosperms; they exhibit a host of changes -- morphological, ecological and molecular -- that make them excellent candidates for evolutionary study. Such studies are most effectively performed in a phylogenetic context, which provides direction to character change. Understanding of orchid relationships began in the pre-evolutionary classification systems of the 1800's that were based solely on morphology, and now is largely based on genomic analysis. The resulting patterns have been used to update family classification and to test many evolutionary hypotheses in the family. Recent analyses with dense sampling and large numbers of nuclear loci have yielded well-supported trees that have confirmed many longstanding hypotheses and overturned others. They are being used to understand evolutionary change and diversification in the family. These include dating the origination of the family, analysis of change in ecological habit (from terrestrial to epiphytic and back again in some cases), revealing significant plastid genome change in leafless holomycotrophs, studying biogeographic patterns in various parts of the world, and interpreting patterns of fungal associations with orchids. Understanding of orchid relationships has progressed significantly in recent decades, especially since DNA sequence data have been available. These data have contributed to an increasingly refined classification of orchids and the pattern has facilitated many studies on character evolution and diversification in the family. Whole genome studies of the family are just beginning and promise to reveal fine-level details underlying structure and function in these plants, and, when set in a phylogenetic context, provide a much richer understanding of how the family has been so successful in diversification.

Crowd-sourced trait data can be used to delimit global biomes

Abstract. Terrestrial biomes and their biogeographic patterns have been derived from a large variety of variables including species distributions and bioclimate or remote sensing products. However, classifying the biosphere into biomes from a functional perspective using biophysical traits has rarely been tested. Such a trait-based biome classification has been limited by data availability. Here, we aimed to exploit crowd-sourced plant observations and trait databases to systematically assess which traits are most suitable for biome classification. We derived global patterns of 33 biophysical traits covering around 50 % of the land surface by combining crowd-sourced species distribution data from the Global Biodiversity Information Facility (GBIF) and trait observations from the TRY database. Using these trait maps as predictors for supervised cluster analyses, we tested to what extent we can reconstruct 31 published biome maps. A sensitivity analysis with randomly sampled combinations of traits was performed to identify the traits that are most appropriate for biome classification. Performance was quantified by comparing modeled biome maps and the respective observation-based biome maps. Finally, spatial gaps in the resulting biome maps were filled using species distribution models to obtain continuous global biome maps. We showed that traits can be used for biome classification and that the most appropriate traits are conduit density; rooting depth; height; and different leaf traits, including specific leaf area and leaf nitrogen content. The best performance of the biome classification was obtained for biome maps based on biogeographic zonation and species distributions, in contrast to biome maps derived from optical reflectance. The availability of crowd-sourced plant observations is heterogeneous, and, despite its exponential growth, large data gaps are prevalent. Nonetheless, it was possible to derive biome classification schemes from these data to predict global biome patterns with good agreement. Therefore, our analysis is a valuable approach towards understanding biome patterns based on biophysical traits and associated ecological strategies.

Oceanic islands act as drivers for the genetic diversity of marine species: Cardita calyculata (Linnaeus, 1758) in the NE Atlantic as a case-study

Geographic distribution, as well as evolutionary and biogeographic processes and patterns of marine invertebrate benthic species are strongly shaped by dispersal ability during the life cycle. Remote oceanic islands lie at the brink of complex biotic and abiotic interactions which have significantly influenced the biodiversity patterns we see today. The interaction between geological environmental change and taxon-specific dispersal modes can influence species evolutionary patterns, eventually delimiting species-specific biogeographic regions. In this study, we compare the population genetic patterns of the marine bivalve Cardita calyculata in the northeast Atlantic, discussing the role of Macaronesian islands during past climatic cycles. The genetic structure and diversity patterns were outlined based on SSR-GBAS loci of 165 individuals and on the mitochondrial COI marker of 22 individuals from the Canary Islands, Madeira, Azores and the Mediterranean. The highly structured genetic pattern found among regions and within archipelagos suggests the central role of oceanic islands in promoting the divergence of the species in both the NE Atlantic and the Mediterranean. The high degree of divergence in the COI dataset (> 7%) suggests the existence of potential cryptic speciation that needs to be further explored with a more comprehensive sampling. Such patterns are only congruent with a scenario where C. calyculata populations were maintained during glacial/interglacial cycles, supporting the role of the studied archipelagos as drivers of diversity for marine biota. We stress the importance of developing studies for species with various life history and dispersal modes. In such a way, a more profound understanding of the biogeographic and evolutionary significance of oceanic islands can catalyse directed conservation efforts, especially in the context of the ongoing climate crisis.

Phylogenetics and reticulation among koelerioid clades, part I: Contraction of Trisetum, expansion of Acrospelion, Graphephorum, and Tzveleviochloa; Graciliotrisetum gen. nov. and resurrection of Aegialina (Poaceae, Pooideae, Poeae, Aveninae)

AbstractKoelerioid grasses (subtribe Aveninae, tribe Poeae; Pooideae) resolve into two major clades, here called Koelerioid Clades A and B. Phylogenetic relationships among koelerioid grasses are investigated using plastid DNA sequences of rpl32‐trnL, rps16‐trnK, rps16 intron, and ITS regions, focusing on Trisetum, Acrospelion, and some annual species (Rostraria p.p. and Trisetaria p.p.) closely related to Trisetum flavescens in Koelerioid Clade A. Phylogenetic analyses of several selected data sets performed for 80 taxa and using maximum likelihood and Bayesian methods, revealed mostly congruent topologies in the nuclear and plastid trees, but also reticulation affecting several lineages. Trisetum is restricted to one species, T. flavescens, which is a sister to the clade formed by Trisetum gracile and Trisetaria aurea. The latter two species are classified here in the genus Graciliotrisetum gen. nov. The sister clade includes three species of Rostraria and Trisetaria lapalmae, all of which are classified here in a resurrected genus, Aegialina, which includes four species. Acrospelion is enlarged to include 13 species after the addition of other species formerly classified in Trisetum sect. Trisetum and T. sect. Acrospelion. We also transfer Trisetum ambiguum, Trisetum longiglume, and Koeleria mendocinensis to Graphephorum; and Helictotrichon delavayi to Tzveleviochloa, expanding these genera to eight and six species, respectively. We evaluate cases of reticulate evolution between Koelerioid Clades A and B and within Koelerioid Clade A, which probably gave rise to Graphephorum, Rostraria cristata, and Rostraria obtusiflora. Finally, we comment on polyploidy and biogeographic patterns in koelerioid grasses. We propose the following 26 new combinations: Acrospelion alpestre, Acrospelion altaicum, Acrospelion argenteum, Acrospelion bertolonii, Acrospelion buschianum, Acrospelion buschianum subsp. transcaucasicum, Acrospelion fuscum, Acrospelion laconicum, Acrospelion macrotrichum, Acrospelion rigidum, Acrospelion rigidum subsp. teberdense, Acrospelion tamonanteae, Acrospelion velutinum, Aegialina lapalmae, Aegialina pubescens, Aegialina pumila, Aegialina pumila subsp. fuscescens, Aegialina salzmannii, Aegialina salzmannii subsp. cossoniana, Graciliotrisetum aureum, Graciliotrisetum gracile, Graphephorum ambiguum, Graphephorum longiglume, Graphephorum mendocinense, Graphephorum orthochaetum, and Tzveleviochloa delavayi. Lectotypes are designated for the names Aegialitis tenuis, Aira melicoides, Avena aspera var. parviflora, Avena delavayi, Koeleria grisebachii var. mendocinensis, Koeleria pubescens subsp. cossoniana, Koeleria pumila, Koeleria salzmannii, Phalaris pubescens, Trisetum aureum, Trisetum cernuum, Trisetum fuscescens, Trisetum longiglume, and Trisetum wolfii; and we designate one neotype for Alopecurus litoreus.

Biogeographic Patterns in Density, Recruitment, Body Size and Zonation of Rocky Intertidal Predators Suggest Increased Population Vulnerability Near Southern Range Limits

ABSTRACTAimSurveying the demography of populations near species range edges may indicate their vulnerability to range contractions or local extinction as the climate changes. In the rocky intertidal, not only are latitudinal ranges constricted by thermal stress, but tides also create zonation or a ‘vertical range’ driven by sharp environmental gradients. By investigating demographics along the latitudinal and vertical ranges simultaneously, we can investigate whether populations may be vulnerable to a changing climate.LocationRocky intertidal habitats along west coast of the United States.TaxaOchre sea star Pisaster ochraceus, six‐armed sea star Leptasterias spp., emarginate whelks (Nucella ostrina and N. emarginata) and channeled whelk N. canaliculata.MethodsIn 2018, we surveyed the demographics of the taxa above at 33 sites spanning > 11° latitude from central Oregon to southern California, near the southern range limits of each taxon. We counted and sized individuals from the high to low intertidal zone. To understand how environmental stress changed with latitude, we evaluated intertidal temperatures in situ, as well as tidal extremes, tidal amplitude and wave exposure using offshore buoys.ResultsFor all taxa, population density, the relative proportion of smaller individuals (except for emarginate whelks) and the upper vertical limits on the shore declined from north to south as temperatures increased and high tide height, tidal amplitude and wave heights decreased. In addition, smaller individual Leptasterias spp. generally inhabited lower shore levels while smaller individual emarginate whelks inhabited higher shore levels coastwide. For N. canaliculata, smaller animals were higher on shore northward, but lower on shore southward.Main ConclusionsWhile this study is a snapshot in time and cannot assess impacts of climate change, our surveys suggest environmentally‐related demographic limitation toward southern range limits and demographically vulnerable southern populations. Therefore, a warming climate may cause local extinctions or range contractions near southern limits.

Disentangling the role of biotic and abiotic factors in shaping microbial biogeographic patterns in the large spatial scale ocean

Across large oceanic spatial scales, the mechanisms governing microbial community composition remain poorly understood, particularly regarding the influence of biotic factors. In this study, samples were collected over a 3772.55-kilometer transect in the Western Pacific surface waters, with 16S and 18S ribosomal RNA gene sequencing employed to elucidate the assembly processes and drivers of microbial communities. Both eukaryotic (EM) and prokaryotic microbial (PM) communities exhibited a significant distance-decay relationship throughout the survey, although their assembly mechanisms differed. Biotic factors played a pivotal role in shaping the biogeographical patterns of both EM and PM communities, indicating that cross-domain microbial interactions significantly affect each other's distribution. Furthermore, the stability of the co-occurrence network was more strongly influenced by cross-domain microbial relationships than by keystone taxa. These findings advance our understanding of the mechanisms and biogeographical patterns sustaining microbial diversity across large oceanic spatial scales.

Stronger biogeographical pattern of bacterioplankton communities than biofilm communities along a riverine ecosystem: a local scale study of the Kaidu river in the arid and semi-arid northwest of China

Although the biogeographical pattern and mechanisms underlying microbial assembly have been well-explored in lentic ecosystems, the relevant scenarios in lotic ecosystems remain poorly understood. By sequencing the bacterial communities in bacterioplankton and biofilm, our study detected their distance-decay relationship (DDR), and the balance between deterministic and stochastic processes, along the Kaidu river in an arid and semi-arid region of northwest China. Our results revealed that bacterioplankton and biofilm had significantly contrasting community structures. The bacterioplankton communities showed a gradually decreasing trend in alpha-diversity from the headwater to the river mouth, contrasting with the alpha-diversity of biofilm communities which was constant along the river length. Both bacterioplankton and biofilm showed significant DDRs along the 500-km river corridor with the slope of the bacterioplankton DDR being steeper than that of the biofilm DDR, which implies a stronger biogeography of bacterioplankton than biofilm. Relative to biofilm communities, the species interactions formed a denser and more complex network in the bacterioplankton communities than in the biofilm communities. Our results also revealed that there was a transition of community assembly from deterministic to stochastic processes upstream to downstream, although both the bacterioplankton and biofilm communities were mainly regulated by deterministic processes within the entire river. All these empirical results expand our knowledge of microbial ecology in an arid and semi-arid lotic ecosystem.

Habitat alters biogeographical and evolutionary patterns of body size in freshwater crayfishes

Abstract Biogeographical patterns explain variation in body size, although the strength and directions of these patterns vary. When researchers account for the micro- or macrohabitats that species inhabit, they often find that biogeographical relationships with body size are modified, especially in taxa that inhabit diverse environments. Freshwater crayfishes are an ideal group in which to study the interaction between habitat, biogeography, and body size, because there are >700 crayfishes that inhabit aquatic environments, semi-terrestrial burrows, and caves. Here, we explore evolution of body size across 452 species of crayfish by considering the interaction between their habitats (aquatic, semi-terrestrial/aquatic, semi-terrestrial, and cave-dwelling) and the mean temperature of their geographical range. We documented 64-fold variation in body length. Aquatic species were the largest and had the greatest variation in body size. Crayfishes that inhabit both semi-terrestrial and aquatic habitats exhibit a weak negative relationship between body size and environmental temperature; solely aquatic species reverse this relationship. Evolutionarily, our ancestral reconstruction suggests that the ancestral crayfish was an aquatic species with a body length of 81.1 mm, which aligns with data from fossil crayfish. Overall, our study highlights how uniting biogeographical and evolutionary approaches improves our ability to explore patterns of animal body size and unearth explanatory mechanisms.

A gigantic new terror bird (Cariamiformes, Phorusrhacidae) from Middle Miocene tropical environments of La Venta in northern South America

AbstractOur knowledge of the fossil avifauna from the Middle Miocene La Venta locality in Colombia is limited almost entirely to aquatic birds. Phorusrhacidae, popularly known as ‘terror birds’, are a group of highly diversified cursorial birds that played the role of apex predators during most of the Cenozoic. Here we present the first record of a phorusrhacid from the La Venta locality. This terror bird can be assigned to the ‘Phorusrhacinae’, a subfamily for which the monophyly is under debate. The fragment of left distal tibiotarsus represents the most northern record of this group for South America and may correspond to the largest terror bird that ever existed. This suggests that terror birds might also have inhabited more tropical ecosystems, providing evidence that they were apex predators in tropical palaeocommunities. Additionally, our research contributes to an understanding of the biogeographical patterns of the Phorusrhacidae lineage dispersal into northern South America and subsequent colonization of North America.

Higher Contribution of Generalists Than Specialists to the Bacterial Biogeography Across Lakes in Northern China

ABSTRACTAimGiven that microbial communities normally comprise generalist and specialist species, there have been limited efforts to estimate the contribution of these sub‐communities to bacterial biogeography regarding ecological assembly processes and nestedness structure. To resolve this gap, we studied the spatial distribution of bacterioplankton communities and their generalist and specialist sub‐communities, as well as the underlying assembly processes.LocationSix lakes span three climate zones in northern China.Time PeriodSeptember 2021.MethodsBy separately analysing the generalist and specialist sub‐communities from the whole communities, we investigated the relationships between sub‐communities and the entire communities in terms of distance‐decay pattern, nestedness, and assembly processes. As such, we assessed the contribution of generalist and specialist sub‐communities to the biogeographic patterns of the whole communities.Major Taxa StudiesBacterial community.ResultsGeneralist sub‐communities were more diverse but less abundant than specialist sub‐communities. In line with the whole communities, both types of sub‐communities exhibited distance‐decay relationships at the regional scale, with the slope of specialists being steeper than that of generalists. Additionally, generalist sub‐communities and whole communities also exhibited similar nestedness patterns, in which assemblages from saline water were the subset of those from freshwater. In terms of assembly processes, generalist sub‐communities and whole communities were strongly regulated by homogeneous selection, whereas specialist sub‐communities were mainly shaped by dispersal limitation. More importantly, there was a transition from stochastic to deterministic assembly processes for generalist sub‐communities and whole communities and generalist sub‐communities with increasing total dissolved solids.Main ConclusionsRelative to the specialists, the assembly processes and nestedness pattern were more altered if the generalists were absent, which implies the higher contribution of generalist sub‐communities on the biogeography of whole communities at the regional scale.

Comparative genomic analysis of two putative novel Idiomarina species from hypersaline miocene deposits

BackgroundHypersaline habitats, as extreme environments, are a great source of well-adapted organisms with unique properties as they have evolved various strategies to cope with these extreme conditions. Bioinformatics and genomic mining may shed light on evolutionary relationships among them. Therefore, the aim of this study was to assess the biodiversity and especially the strategies evolved within the Idiomarina genus, with the primary focus on the taxonomy and genomic adaptations of two novel strains affiliated with Idiomarina genus isolated from unique environment – brines of two Early Miocene salt deposits.ResultsBoth analyzed species belonged to the Idiomarina loihiensis cluster with similarity levels of 16S rRNA gene sequences as high as 99.5% and showed a significant genome size reduction, known characteristic of Idiomarina genomes, though within the genome of Sol25 strain the lowest extent of the carbohydrate utilization genes reduction was observed t among the Idiomarina species. Moreover, the comparative genome analyses indicated that despite both strains being isolated from geographically and geologically similar environments (brines from at least 12 Ma), the species showed higher relatedness to other Idiomarina species than to each other.ConclusionThe present findings highlighted the importance of genomic data in resolving taxonomic uncertainties and understanding of adaptation strategies of extremophiles. Geographic isolation likely contributed to population divergence of the Idiomarina genus, and the recent study offered insights into biogeographic patterns and allopatric speciation of this bacterial group.

Contrasting Supply Dynamics of Dissolved Iron and Nitrate Shape the Biogeography of Nutrient‐Limiting Conditions in the North Pacific

AbstractThe North Pacific is known with iron limitation for phytoplankton growth in the subarctic region and nitrogen limitation in the subtropical gyre. Although the growth rate of phytoplankton is determined by the concentration of limiting nutrient, the supply ratio of iron to nitrogen is suggested to be essential to this biogeographic pattern. However, the underlying dynamics determining the ratio remain largely unknown. We investigated mechanisms of dissolved iron (dFe) and nitrate (NO3−) transport to the euphotic zone of the North Pacific using an eddy‐resolvable biogeochemical model. We show that lateral advection and atmospheric deposition are dominant drivers for dFe transport, resulting in high Fe:N supply ratio in both subarctic and subtropical regions. Conversely, significant vertical supplies of NO3− through upwelling and diffusion processes markedly reduce the supply ratio in the subarctic region. These dynamics combined lead to high Fe:N supply ratio in the gyre and low ratio in the subarctic, ultimately driving high nitrogen fixation condition in the gyre and the iron‐limited phytoplankton growth condition in the subarctic region.

FEMSEC-thematic issue "Rhizosphere-a One Health concept".

The strength of the microbial biogeographic patterns decreased along the increasing gradient of habitat specificity (from sediment to gut tissue) provided by a benthic sea urchin in the Southern Ocean.

A spatial matrix factorization method to characterize ecological assemblages as a mixture of unobserved sources: An application to fish eDNA surveys

Abstract Understanding how ecological assemblages vary in space and time is essential for advancing our knowledge of biodiversity dynamics and ecosystem functioning. Metabarcoding of environmental DNA (eDNA) is an efficient method for documenting biodiversity changes in both marine and terrestrial ecosystems. However, current methods fail to detect and display the biodiversity structure within and between eDNA samples limiting ecological and biogeographical interpretations. We present a spatial matrix factorization method that identifies optimal eDNA sample assemblages—called pools—assuming that taxonomic unit composition is based on a fixed number of unknown sources. These sources, in turn, represent taxonomic units sharing similar habitat properties or characteristics. The method aims to reduce the multi‐taxa composition structure into a low number of dimensions defined by these sources. This method is inspired by admixture analysis in population genetics. Using a marine fish eDNA survey on 263 sampling stations detecting 2888 molecular operational taxonomic units (MOTUs), we apply this method to analyse the biogeography and mixing patterns of fish assemblages at regional and large scales. At large scale, our analysis reveals six primary pools of fish samples characterized by distinct biogeographic patterns, with some mixtures between these pools. We identify pools composed of unique sources, corresponding to distinct and more isolated regions such as the Mediterranean and Scotia Seas. We also identify pools composed of a greater mix of sources, corresponding to geographically connected areas, such as tropical regions. Additionally, we identify the taxa underpinning the formation of each pool. In the regional analysis of Mediterranean eDNA samples, our method successfully identifies different pools, allowing the detection of not only geographic gradients but also human‐induced gradients corresponding to protection levels. Spatial matrix factorization adds a new method in community ecology, where each sample is considered as a mixture of K unobserved sources, to assess the dissimilarity of ecological assemblages revealing environmental and human‐induced gradients. Beyond the study of fish eDNA samples, this method has the potential to shed new light on any biodiversity survey and provide new bioindicators of global change.

The biogeographic history of the allokotosaurian archosauromorphs in the Triassic of Pangaea

ABSTRACT Allokotosauria (Trilophosauridae + Azendohsauridae) is a clade of Early – Late Triassic quadruped, sprawling archosauromorphs with diverse dietary habits, known from Madagascar, India, Morocco, North America, and Europe. We conducted the first quantitative biogeographic analysis of the clade to reconstruct its ancestral areas and dispersal events. The results estimated the India + Tanzania area as ancestral for Allokotosauria. Eastern North America was reconstructed as the ancestral area of Trilophosauridae, implying an Early Triassic Southern to Northern Hemisphere dispersal. Subsequently, trilophosaurids were restricted to the Northern Hemisphere, and at least two dispersal events from Europe to western North America are estimated during the early Anisian and probably during the early Carnian, respectively. Azendohsauridae retained the ancestral area of India + Tanzania during much of its evolutionary history. Two dispersal events to western and eastern North America, respectively, are reconstructed during the Carnian – early Norian, likely during or in the aftermath of the Carnian Pluvial Episode (CPE). This pattern mirrors that of early dinosaurs, which were restricted to the Southern Hemisphere with dispersals to the Northern Hemisphere not recorded until the end of the CPE. This study informs about biogeographic patterns involved in the biotic recovery after the end-Permian mass extinction and the early evolutionary radiation of Archosauromorpha.

Biogeography of the Iranian snakes.

The events of the Cenozoic era such as mountain formation caused Iran to become one of the most amazing biodiversity hotspots in the world today. This pioneering study on Iranian snake biogeography integrates historical and ecological analyses. A phylogeographic review traces speciation and dispersal, while cluster analysis with a new snake checklist assesses faunistic similarities within Iran and its surroundings. Jaccard and Sorenson indices generate similarity dendrograms, Indicator Species Analysis pinpoints regional key species, and Endemism index calculates regional endemism rates, enriching our knowledge of Iran's species diversity. Phylogeographic analyses identify four biogeographical corridors for snake ingress into Iran: the Arabian region through southwestern Iran, the Western Asian mountainous transition zone via northwestern Iran, the Turanian region into northeastern Iran, and the Indus River Valley into southeastern and eastern Iran. Dendrogram analysis divides snake fauna into three groups. The first group associates western Zagros and Khuzestan fauna with the Sahara and Arabian regions. The second group links Kopet Dagh and Turkmen Steppe fauna with the Turanian region, and Central Plateau and Baluchistan fauna with the Iranian region. The third group connects northwest highlands, Alborz and Zagros mountains, and Caspian Sea coasts with the Western Asian Mountain transition zone. The study validates broad biogeographic patterns via ecoregional associations and indicator species analysis, providing finer resolution. Species like Platyceps najadum in Caspian Hyrcanian mixed forests exemplify ecoregional alignment, while Zagros and Alborz mountains exhibit unique faunal indicators, indicating species-level divergence. Shared indicators among widespread ecoregions reflect habitat continuity; exclusive indicators emphasize regional distinctiveness. Despite endemic species prevalence, they seldom act as significant indicators due to various factors. Our research confirms the Zagros Mountains, Khuzestan Plain, Alborz Mountains, and Persian Gulf coasts as snake diversity hotspots, marked by higher species richness compared to other Iranian regions.

Mapping multi-dimensional variability in water stress strategies across temperate forests

Increasing water stress is emerging as a global phenomenon, and is anticipated to have a marked impact on forest function. The role of tree functional strategies is pivotal in regulating forest fitness and their ability to cope with water stress. However, how the functional strategies found at the tree or species level scale up to characterise forest communities and their variation across regions is not yet well-established. By combining eight water-stress-related functional traits with forest inventory data from the USA and Europe, we investigated the community-level trait coordination and the biogeographic patterns of trait associations for woody plants, and analysed the relationships between the trait associations and climate factors. We find that the trait associations at the community level are consistent with those found at the species level. Traits associated with acquisitive-conservative strategies forms one dimension of variation, while leaf turgor loss point, associated with stomatal water regulation strategy, loads along a second dimension. Surprisingly, spatial patterns of community-level trait association are better explained by temperature than by aridity, suggesting a temperature-driven adaptation. These findings provide a basis to build predictions of forest response under water stress, with particular potential to improve simulations of tree mortality and forest biomass accumulation in a changing climate.

Non‐native invasive plants in tropical dry forests: a global review of presence, impacts, and management

Tropical dry forests (TDF) are among the most‐threatened terrestrial ecosystems, experiencing ongoing conversion to agricultural fields, pasture, and human settlements. Human disturbances are often precursors to invasion of ecosystems by non‐native species, but research on invasion patterns in tropical ecosystems is sparse, and there is no comprehensive synthesis of invasive species in TDF. We conducted a review of published scientific literature to catalog and synthesize information about invasion by non‐native plants in TDF ecosystems across the globe, drawing out patterns in the invasion of these ecosystems. We found that 130 invasive plant species were documented as present in TDF, but only 25 of these species were mentioned in three or more articles. Almost all 25 of these more‐studied invasive species—mostly pasture grasses, woody legumes, and climbers—have been intentionally cultivated for agricultural or ornamental purposes. Many of these plants are native to open‐canopy savanna or forest edge habitats and benefit from human‐altered disturbance regimes (burning, grazing, and fuelwood and timber harvesting) of TDF fragments within agricultural landscapes. Field studies show that management approaches incorporating invasive removal, native plantings, and reduction in agricultural disturbance (e.g. ungulate fencing and fire control) simultaneously are often the most successful at reducing invasive plant cover. However, management studies in TDF have focused on a limited number of invasive species, and most were conducted in India and Hawaii. Global differences in TDF soils, natural fire regimes, and historic and current land use by humans influence modern biogeographic patterns of invasion and the feasibility of restoration options.

Distribution pattern of soil nematode communities along an elevational gradient in arid and semi-arid mountains of Northwest China.

Soil nematodes are the most abundant soil metazoans, occupying multiple trophic levels in the soil food web and playing an important role in soil function. Research on the biogeographic distribution patterns of soil nematode communities and their drivers has received greater attention. However, the distribution characteristics of soil nematode communities along the elevational gradient in the arid and semi-arid regions of Northwest China remain unclear. In this study, four elevational gradients (1750-1900, 1900-2100, 2100-2350 and 2350-2560 m) were established on Luoshan Mountain, Ningxia, an arid and semi-arid region in Northwest China, and soil nematodes in the soil layers of 0-10, 10-20 and 20-40 cm were investigated using the improved Baermann funnel method. The results revealed a monotonically decreasing trend in the total number of soil nematodes along the elevational gradient and soil layer depth, decreasing by 63.32% to 79.94% and 73.59% to 86.90%, respectively, while the interactions were not obvious. A total of 1487 soil nematodes belonging to 27 families and 32 genera were identified across the elevational gradient, with Helicotylenchus as the dominant genus, accounting for 10.43% of the total number of nematodes, and bacterivore nematodes as the main trophic groups, accounting for 32.39% to 52.55% of the relative abundance at each elevation, which increased with increasing elevation. Soil nematode community diversity, richness and maturity indices were relatively low at high elevation and decreased by 44.62%, 48% and 54.74%, respectively, with increasing soil layer depth at high elevations. Compared to low elevations, high-elevation soils experienced greater disturbance, reduced structural complexity and nutrient enrichment of the soil food web, and a shift in soil organic matter decomposition from bacterial to fungal pathways as elevation increased. Finally, redundancy analysis showed that soil pH, bulk density, soil moisture, soil organic carbon, available nitrogen, available phosphorus and available potassium were the main soil factors affecting the composition of soil nematode communities, which well explained the differences in nematode communities at different elevations and soil depths. This study can be used as basic information for further research on soil biota in this mountainous region, expanding our further understanding of the spatial ecology of soil nematodes in the arid and semi-arid mountain ecosystems.

Snow leopard phylogeography and population structure supports two global populations with single refugial origin

AbstractSnow leopards (Panthera uncia) inhabit the mountainous regions of High Asia, which experienced serial glacial contraction and expansion during climatic cycles of the Pleistocene. The corresponding impacts of glacial vicariance may have alternately promoted or constrained genetic differentiation to shape the distribution of genetic lineages and population structure. We studied snow leopard phylogeography across High Asia by examining range-wide historical and contemporary genetic structure with mitochondrial DNA and microsatellite markers. We genotyped 182 individuals from across snow leopard range and sequenced portions of the mitogenome in a spatially stratified subset of 80 individuals to infer historical biogeographic and contemporary patterns of genetic diversity. We observed a lack of phylogeographic structure, and analyses suggested a single refugial origin for all sampled populations. Molecular data provided tentative evidence of a hypothesized glacial refugia in the Tian Shan-Pamir-Hindu Kush-Karakoram mountain ranges, and detected mixed signatures of population expansion. Concordant assessments of microsatellite data indicated two global genetic populations, though we detected geographic differences between historical and contemporary population structure and connectivity inferred from mitochondrial and microsatellite data, respectively. Using the largest sample size and geographic coverage to date, we demonstrate novel information on the phylogeographic history of snow leopards, and corroborate existing interpretations of snow leopard connectivity and genetic structure. We recommend that conservation efforts incorporate genetic data to define and protect meaningful conservation units and their underlying genetic diversity, and to maintain the snow leopard’s adaptive potential and continued resilience to environmental changes.