Biogeochemical Cycles Of Carbon Research Articles

Precessional forcing of biogeochemical and nutrient cycling in the tropical western Pacific during the late Pleistocene

Unravelling the biogenic material export production and its relationship to surface ocean nutrient conditions, along with their external forcing, will provide insights into the ocean carbon biogeochemical cycle. In this study, we present data on coccolith particulate inorganic carbon (PIC) export production, coccolith carbon isotopic vital effects, and planktonic foraminifer cadmium to calcium ratio in the tropical western Pacific over the past 250 kiloyears (kyr). These proxies indicate the strength of the coccolith-based carbonate counter pump or coccolithophore productivity, and phosphate concentration in the surface ocean. Our results show that low phosphate concentration correlates with enhanced coccolith-based carbonate counter pump in the precessional band (a cyclicity of 19–23 kyr). Additionally, low phosphate concentration, which indicates high degree of phosphorus utilization, is coupled with enhanced nitrogen fixation, as shown by a nitrogen isotope record in the tropical western Pacific. Greater precipitation in Papua New Guinea (PNG) can occur during local insolation maxima, suggesting a dominant control of precession. This will in turn drive the biogeochemical and nutrient cycling in the tropical western Pacific. We propose that higher amounts of the PNG riverine input caused by greater precipitation can provide additional nutrients and trace element iron (Fe) for phytoplankton. An increased bioavailable Fe in the surface ocean can promote the growth of nitrogen-fixing diazotrophs, which results in a high degree of phosphorus utilization and relieves a potential nitrogen limitation. This may ultimately lead to increased biological productivity, e.g., the coccolith PIC.

Applying Hydrochar Affects Soil Carbon Dynamics by Altering the Characteristics of Soil Aggregates and Microbes

Hydrochar as a carbon-based fertiliser is hypothesised to permanently improve soils by modifying soil carbon quality through the regulation of soil organic carbon dynamics, aggregation properties and microbial diversity. However, the interactions between soil organic carbon (SOC) molecular structure, soil aggregates and soil microbial communities as a result of hydrochar application have not been fully elucidated. In this study, the use of hydrochar derived from duck farm biomass waste for a maize cultivation experiment verified that hydrochar had a promoting effect on maize growth, effectively increasing the nutrient supply to the soil. The application of hydrochar increased the soil organic carbon content by 78 to 253 per cent, which was dominated by CHON-type lignin, carbohydrates and condensed aromatic structural compounds. Meanwhile, hydrochar had a significant effect on both soil aromatic structures and oxygenated functional groups, forming more soil macroaggregates. In addition, hydrochar had a positive effect on soil bacterial abundance. This study suggests that the key mechanism by which hydrochar regulates soil carbon dynamics is mainly through the stabilising effect of hydrochar on macroaggregates while increasing the abundance of carbon-related microscopic bacteria. These results will help to elucidate the potential effects of aqueous carbon on the biogeochemical cycling of carbon in soils.

Experimental Study on Ecological and Biogeochemical Role of Calcimycocavites in Understanding Carbon Fluxes in the Age of Global Warming and Climate Change

The present work reports the results of calcimycocavitological studies on the seashells from beaches of north Goa, India yielding distinct microfungal forms known as calcimycocavites which are important in global climate change studies. SEM studies of the calcareous shell fragments revealed the micro tunneling behavior of the fungi. Digital analysis of SEM images using Mountain Premium 7.2 software revealed the fine topography of calcimycocavites hyphae along with unidentified presumptive biomineral encrustations. The biodegradation of mycocavitogenic insoluble Calcium Oxalate by oxalotrophic members of bacterial communities may occur using bacterial Oxalate decarboxylase and formate dehydrogenase finally releasing Carbon Di Oxide and water and Calcium oxide to the local nutrient pool. Calcimycocavites may be thus involved in the biogeochemical cycling of Carbon and Calcium in the Ocean-Beach environment. The ecological, biological, and biogeochemical implications of the findings are presented concerning the possible role of calcimycocavites in Calcium and Carbon cycling by breakdown of the calcareous shells and release of inorganic and organic components in the ecosystem. The role of calcimycocavites is stressed in global climate studies.

Unequal impacts of unidirectional freeze-thaw on different soil layers and aggregate sizes: Evidenced by microbial communities and CO2 emissions

Currently available investigations often fail to adequately recognize that soil does not freeze or thaw instantly nor uniformly, but unidirectionally and progressively. Unidirectional freeze-thaw can re-organize soil physio-, chemical- and biological-properties across layers as well among aggregates, thus posing far-reaching yet undervalued impacts on soil carbon biogeochemical cycling, especially in eroding settings. In this study, a Mollisol was refilled into soil columns, and respectively experienced complete freeze-thaw (i.e., no layer distinguished), and progressive freeze-thaw (i.e., from outer layer T1, to inner core T3). After thawing, all soils were fractionated into six size classes, and each size class was then incubated at 10℃ over 7 days to measure daily CO2 emission rate. Our results show that: (1) The soil microbial biomass carbon (SMBC) was generally reduced by 25 % after freeze-thaw, but only the finest aggregates ≤ 32 μm maintained comparable CO2 emission rates. (2) The inner core T3 thawed last and survived with significantly more SMBC and CO2, but lower respiratory quotient (qCO2), than the outer layer T1 thawed first. (3) The fine aggregates survived with more SMBC and total CO2 emissions, but significantly lower qCO2 and smaller ratios of fungal to bacterial biomass carbon, than the coarse aggregates. The disproportionally less respiratory carbon losses (i.e., lower qCO2) in T3 was probably because the lagged freezing and thus weakened water-ice phase changes in the inner core helped to better preserve the soil microbes. The fungal-dominant coarse aggregates were very responsive to freezing and evidently more respiratory active, whereas the fine aggregates were more resilient as the enhanced freezing point depression and the thus prolonged unfrozen state, fostering a better microbial survival with bacteria-dominant communities and robust basal respiration. Although limited to controlled simulation, this study may help to disentangle the role of unidirectional freeze-thaw in perturbing slope-scale soil carbon biogeochemical cycling.

Increasing seasonal variation in the extent of rivers and lakes from 1984 to 2022

Abstract. Knowledge of the spatial and temporal distribution of surface water is important for water resource management, flood risk assessment, monitoring ecosystem health, constraining estimates of biogeochemical cycles and understanding our climate. While global-scale spatiotemporal change detection of surface water has significantly improved in recent years due to planetary-scale remote sensing and computing, it has remained challenging to distinguish the changing characteristics of rivers and lakes. Here we analyze the spatial extent of permanent and seasonal rivers and lakes globally over the past 38 years based on new data of river system extents and surface water trends. Results show that while the total permanent surface area of both rivers and lakes has remained relatively constant, the areas with intermittent seasonal coverage have increased by 12 % and 27 % for rivers and lakes, respectively. The increase is statistically significant in over 84 % of global water catchments based on Spearman's rank correlations (rho) above 0.05 and p values less than 0.05. The seasonal river extent is nearly 32 % larger than the previously observed annual mean river extent, suggesting large seasonal variations that impact not only ecosystem health but also estimations of terrestrial biogeochemical cycles of carbon. The outcomes of our analysis are shared as the Surface Area of Rivers and Lakes (SARL) database, serving as a valuable resource for monitoring and research of hydrological cycles, ecosystem accounting, and water management.

Characterizing the Atmospheric Mn Cycle and Its Impact on Terrestrial Biogeochemistry

AbstractThe role of manganese (Mn) in ecosystem carbon (C) biogeochemical cycling is gaining increasing attention. While soil Mn is mainly derived from bedrock, atmospheric deposition could be a major source of Mn to surface soils, with implications for soil C cycling. However, quantification of the atmospheric Mn cycle, which comprises emissions from natural (desert dust, sea salts, volcanoes, primary biogenic particles, and wildfires) and anthropogenic sources (e.g., industrialization and land‐use change due to agriculture), transport, and deposition, remains uncertain. Here, we use compiled emission data sets for each identified source to model and quantify the atmospheric Mn cycle by combining an atmospheric model and in situ atmospheric concentration measurements. We estimated global emissions of atmospheric Mn in aerosols (<10 μm in aerodynamic diameter) to be 1,400 Gg Mn year−1. Approximately 31% of the emissions come from anthropogenic sources. Deposition of the anthropogenic Mn shortened Mn “pseudo” turnover times in 1‐m‐thick surface soils (ranging from 1,000 to over 10,000,000 years) by 1–2 orders of magnitude in industrialized regions. Such anthropogenic Mn inputs boosted the Mn‐to‐N ratio of the atmospheric deposition in non‐desert dominated regions (between 5 × 10−5 and 0.02) across industrialized areas, but that was still lower than soil Mn‐to‐N ratio by 1–3 orders of magnitude. Correlation analysis revealed a negative relationship between Mn deposition and topsoil C density across temperate and (sub)tropical forests, consisting with atmospheric Mn deposition enhancing carbon respiration as seen in in situ biogeochemical studies.

Treeline displacement may affect lake dissolved organic matter processing at high latitudes and altitudes

Climate change induced shifts in treeline position, both towards higher altitudes and latitudes induce changes in soil organic matter. Eventually, soil organic matter is transported to alpine and subarctic lakes with yet unknown consequences for dissolved organic matter (DOM) diversity and processing. Here, we experimentally investigate the consequences of treeline shifts by amending subarctic and temperate alpine lake water with soil-derived DOM from above and below the treeline. We use ultra-high resolution mass spectrometry (FT-ICR MS) to track molecular DOM diversity (i.e., chemodiversity), estimate DOM decay and measure bacterial growth efficiency. In both lakes, soil-derived DOM from below the treeline increases lake DOM chemodiversity mainly through the enrichment with polyphenolic and highly unsaturated compounds. These compositional changes are associated with reductions in bulk and compound-level DOM reactivity and reduced bacterial growth efficiency. Our results suggest that treeline advancement has the potential to enrich a large number of lake ecosystems with less biodegradable DOM, affecting bacterial community function and potentially altering the biogeochemical cycling of carbon in lakes at high latitudes and altitudes.

Editorial preface to special issue: Neogene-Quaternary changes of the Indo-Pacific Warm Pool encompassing oceanic, hydrologic and carbon cycles, and their implications for future change

The Indo-Pacific Warm Pool (IPWP) is the primary supplier of heat and moisture to the global atmosphere, and exerts a significant impact on tropical and worldwide climate variability. This special issue expands our understanding of the paleoceanographic and paleoclimatic evolution of the IPWP since Neogene times with implications for understanding future change. It contains fifteen research articles addressing two primary themes: (1) Ocean-atmosphere coupled processes via the ocean water-column, sea surface, atmospheric evaporation/precipitation; and (2) Sediment source-to-sink and biogeochemical carbon-cycles, and their interactions with oceanographic, hydrological, tectonic and other factors. These contributions improve our understanding of thermocline temperature, salinity, oxygenation, hydrography, carbon cycle, biological productivity, and sedimentary response in the IPWP across Neogene and Quaternary time scales, as well as aiding in the forecast of future climate responses in the context of current global warming. The special issue will capture the attention of geologists, climatologists, and anybody else interested in global climate change.

Organic matter preservation through complexation with iron minerals in two basins of a dimictic boreal lake with contrasting deep water redox regimes

The biogeochemical cycles of iron and organic carbon (OC) are closely interconnected in terrestrial and aquatic systems. In ocean waters, the concentration of reactive Fe is tightly controlled by soluble organic ligands. In soils, Fe stabilizes OC by forming aggregates that shield OC from degradation. In lake sediments however, the role of Fe in the preservation of OC has not been explored as extensively yet. We investigated Fe-OC interactions in sediment collected from Lake Tantaré, in which two basins are characterized by contrasting redox conditions. These contrasting redox conditions provide an opportunity to assess their importance in the formation of stable Fe-OC complexes. On average, 30.1 ± 6.4 % of total OC was liberated upon reductively dissolving reactive iron. The Fe-associated and the non-Fe-associated OC pools were characterized at the elemental (OC, TN), isotopic (δ13C, δ15N) and functional group (FTIR) levels. Large differences in OC:Fe and TN:Fe ratios between the two basins were found which were not linked to OM chemical composition but rather to differences in reactive iron concentrations stemming from the higher abundance of iron sulfides in the anoxic basin. Nevertheless, since the affinity of OM for iron sulfides is lower than that for iron hydroxides, using OC:Fe and TN:Fe ratios as a diagnostic tool for the type of OM-Fe interactions should be done with care in anoxic environment. Same caution should be considered for oxic sediments due to the variation of the proportion of iron hydroxides associated with OM from sample to sample.

Effects of biodegradable microplastics on arsenic migration and transformation in paddy soils: a comparative analysis with conventional microplastics

The combined pollution of microplastics (MPs) and arsenic (As) in paddy soils has attracted more attention worldwide. However, there are few comparative studies on the effects of biodegradable and conventional MPs on As migration and transformation. Therefore, conventional (polystyrene, polyethylene, polyvinyl chloride) and biodegradable (polybutadiene styrene, polylactic acid, polybutylene adipate terephthalate) MPs were selected to explore and demonstrate their influences and mechanism on As migration from paddy soils to overlying water and As speciation transformation through microcosmic experiment with measuring the changes of As chemical distribution, physicochemical indexes and microbial community in paddy soils. The results showed that biodegradable MPs enhanced As migration and transformation more effective than conventional MPs during 60 d. Biodegradable MPs indirectly increased the content of As(Ⅲ) and bioavailable As by changing the microbial community structure and affecting the biogeochemical cycles of carbon, nitrogen, sulfur and iron in soils, and promoted the As migration and transformation. PBS showed the strongest promoting effect, transforming to more As(Ⅲ) (11.43%) and bioavailable As (4.28%) than control. This helps to a better understanding of the effects of MPs on As biogeochemical cycle and to clarify the ecological and food safety risks of their combined pollution in soils.

Natural organic small molecules promote the aging of plastic wastes and refractory carbon decomposition in water

Microplastics and nanoplastics are ubiquitous in rivers and undergo environmental aging. However, the molecular mechanisms of plastic aging and the in-depth effects of aging on ecological functions remain unclear in waters. The synergies of microplastics and nanoplastics (polystyrene as an example) with natural organic small molecules (e.g., natural hyaluronic acid and vitamin C related to biological tissue decomposition) are the key to producing radicals (•OH and •C). The radicals promote the formation of bubbles on plastic surfaces and generate derivatives of plastics such as monomer and dimer styrene. Nanoplastics are easier to age than microplastics. Pristine plastics inhibit the microbial Shannon diversity index and evenness, but the opposite results are observed for aging plastics. Pristine plastics curb pectin decomposition (an indicator of plant-originated refractory carbon), but aging plastics promote pectin decomposition. Microplastics and nanoplastics undergoing aging processes enhance the carbon biogeochemical cycle. For example, the increased carbohydrate active enzyme diversity, especially the related glycoside hydrolase and functional species Pseudomonas and Clostridium, contributes to refractory carbon decomposition. Different from the well-studied toxicity and aging of plastic pollutants, this study connects plastic pollutants with biological tissue decomposition, biodiversity and climate change together in rivers.

Taxonomic difference in marine bloom-forming phytoplanktonic species affects the dynamics of both bloom-responding prokaryotes and prokaryotic viruses.

The production of dissolved organic matter during phytoplankton blooms and consumption by heterotrophic prokaryotes promote marine carbon biogeochemical cycling. Although prokaryotic viruses presumably affect this process, their dynamics during blooms are not fully understood. Here, we investigated the effects of taxonomic difference in bloom-forming phytoplankton on prokaryotes and their viruses. We analyzed the dynamics of coastal prokaryotic communities and viruses under the addition of dissolved intracellular fractions from taxonomically distinct phytoplankton, the diatom Chaetoceros sp. (CIF) and the raphidophycean alga Heterosigma akashiwo (HIF), using microcosm experiments. Ribosomal RNA gene amplicon and viral metagenomic analyses revealed that particular prokaryotes and prokaryotic viruses specifically increased in either CIF or HIF, indicating that taxonomic difference in bloom-forming phytoplankton promotes distinct dynamics of not only the prokaryotic community but also prokaryotic viruses. Furthermore, combining our microcosm experiments with publicly available environmental data mining, we identified both known and novel possible host-virus pairs. In particular, the growth of prokaryotes associating with phytoplanktonic organic matter, such as Bacteroidetes (Polaribacter and NS9 marine group), Vibrio spp., and Rhodobacteriales (Nereida and Planktomarina), was accompanied by an increase in viruses predicted to infect Bacteroidetes, Vibrio, and Rhodobacteriales, respectively. Collectively, our findings suggest that changes in bloom-forming species can be followed by an increase in a specific group of prokaryotes and their viruses and that elucidating these tripartite relationships among specific phytoplankton, prokaryotes, and prokaryotic viruses improves our understanding of coastal biogeochemical cycling in blooms.IMPORTANCEThe primary production during marine phytoplankton bloom and the consumption of the produced organic matter by heterotrophic prokaryotes significantly contribute to coastal biogeochemical cycles. While the activities of those heterotrophic prokaryotes are presumably affected by viral infection, the dynamics of their viruses during blooms are not fully understood. In this study, we experimentally demonstrated that intracellular fractions of taxonomically distinct bloom-forming phytoplankton species, the diatom Chaetoceros sp. and the raphidophycean alga Heterosigma akashiwo, promoted the growth of taxonomically different prokaryotes and prokaryotic viruses. Based on their dynamics and predicted hosts of those viruses, we succeeded in detecting already-known and novel possible host-virus pairs associating with either phytoplankton species. Altogether, we propose that the succession of bloom-forming phytoplankton would change the composition of the abundant prokaryotes, resulting in an increase in their viruses. These changes in viral composition, depending on bloom-forming species, would alter the dynamics and metabolism of prokaryotes, affecting biogeochemical cycling in blooms.

Spatiotemporal dynamics of dissolved organic matter and disinfection by-products formation potential of Shengzhong Lake in southwest China.

The quality and quantity of dissolved organic matter (DOM) in lakes as well as its environmental effects associated with the unintended disinfection by-products (DBPs) have received continuous attention. This work investigated the spatiotemporal dynamics of DOM in Shengzhong Lake in southwest China and the formed DBPs during the chlorine disinfection process. The results showed that lake water in summer had significantly higher dissolved oxygen and dissolved organic carbon than that in winter. In contrast, DOM in winter demonstrated an obviously higher aromaticity and molecular weight than that in summer. Four fluorescence components, i.e., terrestrial humic-like substances (C1), protein-like substances (C2), and microbial humic-like substances (C3 and C4), were identified, and their relative abundance followed in the order of C3 > C4 > C2 > C1 in winter and C4 > C3 > C1 > C2 in summer. The formation potential of trihalomethanes and haloacetic acids in winter was higher and lower than that in summer, which was mainly ascribed to the content of aromatic and hydrophobic substances. Compared to the significant seasonal dynamic, the spatial variation of DOM and the formed DBPs was not obvious. This work sheds light on the spatial-temporal distribution of DOM and the potentially formed DBPs in Shengzhong Lake, and will be helpful for understanding the biogeochemical cycle of carbon and assessing the drinking water safety.

The impacts of water-sediment regulation on organic carbon in the Yellow River

The Yellow River water-sediment regulation (WSR) is a unique hydraulic engineering project that involves the resuspension and rapid discharge of sediment downstream under the influence of density currents. This process leads to short-term high-intensity sediment scouring, which in turn increases the output of organic carbon. The impact of WSR on the biogeochemical cycling of organic carbon in rivers has not been adequately explored. In this study, we applied stable isotope and 3-D fluorescence analyses to investigate the impact of WSR at the Xiaolangdi (XLD) Reservoir on the sources and fluxes of dissolved organic carbon (DOC) and particulate organic carbon (POC) in the Yellow River. The POC and DOC fluxes during WSR (∼51 days) accounted for 95.5 % and 28.3 % of the annual fluxes. According to the Bayesian model used in the study, the fluxes of POC from sediment, terrestrial plants, and sewage increased by 23.2, 13.36, and 56.55 times, respectively, during the WSR period. On the other hand, the flux from various sources of DOC decreased by ∼0.7 times during the WSR process. The three-dimensional fluorescence index (specific UV absorbance [SUVA254], humification index [HIX], biological index [BIX], and fluorescence index [FI]) further reveals that in the WSR process, more DOC comes from sediment and upstream water. This study provides quantitative insights into the effects of WSR on river organic carbon export dynamics and the driving mechanisms behind them. It also has important implications for understanding the impact of anthropogenic disturbance on the global carbon cycle.

Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen.

Marine macroalgae produce abundant and diverse polysaccharides, which contribute substantially to the organic matter exported to the deep ocean. Microbial degradation of these polysaccharides plays an important role in the turnover of macroalgal biomass. Various members of the Planctomycetes-Verrucomicrobia-Chlamydia (PVC) superphylum are degraders of polysaccharides in widespread anoxic environments. In this study, we isolated a novel anaerobic bacterial strain NLcol2T from microbial mats on the surface of marine sediments offshore Santa Barbara, CA, USA. Based on 16S ribosomal RNA (rRNA) gene and phylogenomic analyses, strain NLcol2T represents a novel species within the Pontiella genus in the Kiritimatiellota phylum (within the PVC superphylum). Strain NLcol2T is able to utilize various monosaccharides, disaccharides, and macroalgal polysaccharides such as agar and ɩ-carrageenan. A near-complete genome also revealed an extensive metabolic capacity for anaerobic degradation of sulfated polysaccharides, as evidenced by 202 carbohydrate-active enzymes (CAZymes) and 165 sulfatases. Additionally, its ability of nitrogen fixation was confirmed by nitrogenase activity detected during growth on nitrogen-free medium, and the presence of nitrogenases (nifDKH) encoded in the genome. Based on the physiological and genomic analyses, this strain represents a new species of bacteria that may play an important role in the degradation of macroalgal polysaccharides and with relevance to the biogeochemical cycling of carbon, sulfur, and nitrogen in marine environments. Strain NLcol2T (= DSM 113125T = MCCC 1K08672T) is proposed to be the type strain of a novel species in the Pontiella genus, and the name Pontiella agarivorans sp. nov. is proposed.IMPORTANCEGrowth and intentional burial of marine macroalgae is being considered as a carbon dioxide reduction strategy but elicits concerns as to the fate and impacts of this macroalgal carbon in the ocean. Diverse heterotrophic microbial communities in the ocean specialize in these complex polymers such as carrageenan and fucoidan, for example, members of the Kiritimatiellota phylum. However, only four type strains within the phylum have been cultivated and characterized to date, and there is limited knowledge about the metabolic capabilities and functional roles of related organisms in the environment. The new isolate strain NLcol2T expands the known substrate range of this phylum and further reveals the ability to fix nitrogen during anaerobic growth on macroalgal polysaccharides, thereby informing the issue of macroalgal carbon disposal.

Unveil of the role of fungal taxa in iron(III) reduction in paddy soil.

Hitherto, research on iron(III)-reduction has mainly focused on bacteria rather than fungal communities. To acquire insight into fungi involved in iron(III) reduction, typical organic matters (containing cellulose, glucose, lactate, and acetate) and ferrihydrite were used as electron donors and acceptors, respectively, in the presence of antibiotics. After antibiotic addition, microbial iron(III) reduction was still detected at quite high rates. In comparison, rates of iron(III) reduction were significantly lower in cellulose-amended groups than those with glucose, lactate, and acetate under the antibiotic-added condition. Patterns of intermediate (e.g., acetate, pyruvate, glucose) turnover were markedly different between treatments with and without antibiotics during organic degradation. A total of 20 genera of potential respiratory and fermentative iron(III)-reducing fungi were discovered based on ITS sequencing and genome annotation. This study provided an insight into the diversity of iron(III)-reducing fungi, indicating the underestimated contribution of fungi to iron and the coupled carbon biogeochemical cycling in environments.

Dissolved carbon dynamics and exchange in a high permeability beach aquifer

The biogeochemical transformation of dissolved carbon in tidal beaches affects the coastal carbon cycle and budget. Yet, the influence of groundwater flow on the behavior of dissolved carbon and CO2 flux across the different interfaces in these dynamic beach systems remains poorly understood, especially in deep beach aquifers. In this study, we investigated the biogeochemical reactions and origins of dissolved carbon and quantitatively evaluated CO2 outgassing driven by submarine groundwater discharge (SGD) in a high permeability beach aquifer (9–13 m depth) located in the South China Sea shelf. Results revealed that both dissolved inorganic carbon (DIC) and total alkalinity (TA) exhibited non-conservative additions across the salinity gradient. The excess DIC and TA most likely resulted from organic carbon decomposition in the brackish and saline zones. Aerobic respiration (upper saline plume zone), anaerobic reactions, and tidal mixing were identified as the dominant processes controlling DIC and TA dynamics. The mean CO2 outgassing flux across the beach sediment-air interface was estimated to be 1.05 g m−2 d−1, significantly higher than the CO2 flux across the sea-air interface. The outgassing pattern of groundwater CO2 from beach aquifer appeared to be driven by tidal pumping. Considering the combined effects of SGD-derived dissolved carbon and nutrients, we suggest that SGD yielded a net CO2 flux, contributing to 45 % of the CO2 flux across the sea-air interface. SGD directly and indirectly delivered substantial CO2 from the beach aquifer to the atmosphere, approximately (4.89–9.21) × 103 tons of CO2 per year along the 76.2 km long sandy coast. These findings demonstrate that intertidal beach aquifers, as active biogeochemical reactors have the strong potential to intensify CO2 emissions to the atmosphere through both beach sediment-air and sea-air interfaces. This study provides a better understanding of the links between carbon biogeochemical cycles and hydrologic processes in the coastal zones.

Differential Adsorption of Dissolved Organic Matter and Phosphorus on Clay Mineral in Water-Sediment System.

Lake sediments connection to the biogeochemical cycling of phosphorus (P) and carbon (C) influences streamwater quality. However, it is unclear whether and how the type of sediment controls P and C cycling in water. Here, the adsorption behavior of montmorillonite (Mt) with different interlayer cations (Na+, Ca2+, or Fe3+) on dissolved organic matter (DOM) and P was investigated to understand the role of Mt in regulating the organic carbon-to-phosphate (OC/P) ratio within freshwater systems. The adsorption capacity of Fe-Mt for P was 3.2-fold higher than that of Ca-Mt, while it was 1/3 lower for DOM. This dissimilarity in adsorption led to an increased OC/P in Fe-Mt-dominated water and a decreased OC/P in Ca-Mt-dominated water. Moreover, an in situ atomic force microscope and high-resolution mass spectrometry revealed molecular fractionation mechanisms and adsorptive processes. It was observed that DOM inhibited the nucleation and crystallization processes of P on the Mt surface, and P affected the binding energy of DOM on Mt through competitive adsorption, thereby governing the interfacial P/DOM dynamics on Mt substrates at a molecular level. These findings have important implications for water quality management, by highlighting the role of clay minerals as nutrient sinks and providing new strategies for controlling P and C dynamics in freshwater systems.

A laser–laser method for carbonate C and O isotope measurement, metrology assessment, and stratigraphic applications

The stable isotopic compositions of carbon and oxygen (δ13Ccarb and δ18Ocarb) measured from carbonates are widely used in geology, notably to reconstruct paleotemperatures and the secular evolution of the biogeochemical carbon cycle, to characterize limestone sediment diagenesis, and to provide chemostratigraphy records. The standard technique used since the mid-20th century to measure C and O isotopic ratios is based on a wet chemical acid digestion protocol in order to evolve CO2 from carbonates—the latter being analyzed by mass spectrometry and, more recently, infrared spectroscopy. A newly developed laser-based method aims to circumvent this chemical preparation step by producing CO2 via an instant and spatially resolved calcination reaction. We describe an evolution of the laser calcination benchtop system previously described and used as a proof of concept toward a portable system, and we present the efficiency of this tool for performing carbon and oxygen isotope measurements from carbonate matrixes following standard evaluation metrology protocol. This metrological study explores the following: i) the use of internal standards; ii) inter-calibration with the traditional acid chemical preparation method; iii) analysis of the uncertainties of using GUM and ANOVA. Using 15 different types of carbonate minerals encompassing a range of isotopic VPDB compositions between −18.6‰ and +16.06‰ and between −14.80‰ and −1.72‰ for δ13Ccarb and δ18Ocarb, we show that isotopic cross-calibration is verified for both carbon and oxygen, respectively, and we demonstrate that the uncertainties (1σ) of the δ13Ccarb and δ18Ocarb measurements of laser–laser isotopic analysis are within 0.41‰ and 0.68‰, respectively. The advantages of this method in saving time and spatially resolved and automated analysis in situ are demonstrated by high-resolution chemostratigraphic analysis of a laminated lacustrine travertine sample.

Differentiation of prokaryotic community composition in suspended sediment size-fractionation in a small loess watershed

The transfer of particle-bound prokaryotes and substrates from slopes to rivers during soil erosion is a crucial dynamic process that greatly influences terrestrial biological and geochemical cycles. Particle size strongly affects the transport distance of suspended sediments and likely induces prokaryote and substrate variations along the course of the river. Previous studies have mainly focused on the spatial redistribution of soil prokaryotes, whereas the variation in prokaryotic diversity and community composition among different particle size-fractions in suspended sediments remain unclear. In this study, suspended sediments were collected at four plots (upstream, middle stream, downstream, and dam) along a river that runs through a valley. Sampled sediments were size-fractionated into > 63 μm and < 63 μm particles (referred to as small and large particle fractions hereafter), to identify the corresponding prokaryotic community composition, interactions, and functions. The richness index (Chao1 and observed species) and the diversity index (Shannon) of sediment-associated prokaryotic communities significantly decreased from upstream towards dam plots, except in the small particle fraction in downstream and dam plots. The highest β-diversity index value was found for the large particle fractions, while the geospatial contribution to β-diversity varied. The concentration of Proteobacteria in downstream (41.39 %) and dam (34.86 %) plots was lower than that in the upstream (47.65 %) and middle stream (45.90 %) plots. In contrast, Cyanobacteria (4.89 % and 6.75 %) and Verrucomicrobiota (5.98 % and 11.00 %) concentrations were greater in the downstream and dam plots, respectively, than those in the upstream (0.93 % and 2.43 %) and middle stream (3.37 % and 3.11 %) plots, respectively. Additionally, the concentrations of Verrucomicrobiota and Bacteroidota were significantly higher in the small particle fractions (2.26–8.12 % and 4.33–7.72 %) than those in the large particle fractions (2.03–5.94 % and 3.70–7.11 %). Compared to the other plots, upstream plots had a larger clustered network and a greater number of co-occurrences within the prokaryotic community in the bulk sediment and in the small particle fraction, whereas more complex interactions among prokaryotic communities were found in the large particle fraction from the dam plots. Soil organic carbon (SOC), total nitrogen (TN), and Olsen phosphorus were the three most influential factors, explaining 67.41 % of the variation in prokaryotic community. Proteobacteria and Myxococcota correlated negatively with SOC, TN, and Olsen P but positively with C = O. Conversely, Cyanobacteria and Verrucomicrobiota correlated positively with SOC, TN, and Olsen P but negatively with C = O. Functional groups linked to the biogeochemical cycling of carbon (methanol oxidation and methylotrophy) were found in high concentrations, whereas those linked to nitrogen (nitrogen and nitrate respiration) were found in low concentrations in upstream and middle stream plots. Reassembly of the sediment physicochemical characteristics among geospatial plots along the transport transect significantly altered the prokaryotic community composition and metabolic functional groups.