Benthic Oxygen Demand Research Articles

Reconciling the importance of meiofauna respiration for oxygen demand in muddy coastal sediments

ABSTRACTMeiofauna, organisms smaller than 1 mm, are the most abundant and diverse invertebrates inhabiting the world's ocean floor but their contribution to benthic oxygen demand is still poorly constrained. This knowledge is crucial for understanding seabed respiration, global marine carbon, and oxygen cycles, which are relevant to all nutrient cycling and energy flows in the ecosystem. It is common to predict meiofauna respiration based on their biomass or volume, which are difficult to quantify, and thus meiofauna are rarely included in biogeochemistry studies. In addition, it is still unknown how well the generalized allometric relations describe all meiofauna respiration. Therefore, we used a novel approach specially developed for single meiofauna respiration measurements to derive the respiration rates of 10 meiofauna groups in two marine and one brackish coastal muddy environments under oxic and hypoxic conditions, representing natural sediment conditions. Our estimates suggest that large ostracods and juveniles of macrofauna (e.g., bivalves, trumpet worms, and priapulids) had the highest individual respiration rates. Meiofauna community as a whole contributed 3–33% to sediment oxygen uptake. However, the most important contributors to the overall sediment oxygen uptake were nematodes and foraminifera which had lower respiration rates but were highly abundant. Therefore, out of more than 22 meiofauna phyla, we recommend that nematode and foraminifera respiration, which contributes 3–30% (total 3–33%) to sediment oxygen uptake, should be taken into consideration in any estimations of benthic oxygen and carbon cycles.

High‐resolution water‐quality and ecosystem‐metabolism modeling in lowland rivers

AbstractHigh‐resolution monitoring of water quality and ecosystem functioning over large spatial scales in expansive lowland river catchments is challenging. Therefore, we need modeling tools to predict these processes at locations where observations are absent. Here, we present a new approach to estimate ecosystem metabolism underpinned by a high‐resolution, process‐based model of in‐stream flows and water quality. The model overcomes the current challenges in metabolism modeling by accounting for oxygen transport under varying flows and oxygen transformations due to biogeochemical processes. We implement the model in a 62‐km‐long stretch of the River Thames, England, using observations spanning 2 yr. Model outputs suggest that the river is primarily autotrophic from mid‐spring to mid‐summer due to high biomass during low‐flow periods, and is heterotrophic during the rest of the year. Ecosystem respiration in upstream reaches is driven mainly by biochemical oxygen demand, autotrophic respiration, and nitrification processes, whereas downstream sites also show a control of benthic oxygen demand in addition to the aforementioned processes. Using empirical modeling, we analyze the sensitivity of our estimated metabolism rates to multiple environmental stressors. Results demonstrate that empirical models could be useful for rapid river health assessments, but need improvements to reproduce peak metabolism rates. The process‐based model, although more complex than existing in situ approaches to metabolism quantification, allows inference when gaps in continuous observations are present. The model offers additional benefits for predicting metabolism rates under future scenarios of environmental change incorporating multiple stressor effects.

Benthic oxygen dynamics and implication for the maintenance of chronic hypoxia and ecosystem degradation in the Berre lagoon (France)

Chronic hypoxia and anoxia have strong impacts on coastal ecosystems worldwide. In shallow coastal ecosystems, such situations are essentially driven by high benthic oxygen (O2) demand resulting from organic matter mineralization in surface sediment and amplified by a low mixing of the water column. However, the benthic O2 demand may greatly vary according to the O2 availability, sediment biogeochemical properties, and bioturbation by macrobenthic fauna. Here we examined how the sediment O2 demand varies in response to seasonal and long-lasting (pluri-decadal) hypoxia in the Berre lagoon, a coastal ecosystem impacted by chronic hypoxia events since 60 years. Oxygen penetration depth, diffusive and total O2 fluxes were measured in situ using a microelectrode autonomous profiler and benthic chamber deployments at three sites impacted by quite-permanent (PA), seasonal (PI) and occasional (PO) hypoxia in August 2016. They were seasonally repeated at site PI between August 2015 and August 2016. Additional physical and chemical characteristics were also measured in surface sediment. Sediment profile images and characteristics of benthic macrofauna communities enabled to estimate the quality of the benthic ecosystem. The highest benthic O2 demand was observed after seasonal anoxia in relation to the important accumulation of reduced chemical species in surface sediment. Interestingly, both pluri-decadal hypoxia and normoxia produced relatively high benthic O2 demand related to a higher accumulation of organic matter and to the presence of reduced chemical species at site dominated by hypoxia, and to the presence of fresher organic matter and active bioturbating macrofaunal communities in normoxic site. The low benthic O2 demand at site seasonally impacted by hypoxia likely resulted from the degraded state of the macrofaunal community and from the lower accumulation of reduced chemical species. The occurrence of hypoxia and anoxia situations in the Berre lagoon was predicted from the competition between kinetics of benthic O2 demand and water column reoxygenation events induced by strong wind. The good agreement between the measured and predicted hypoxia/anoxia occurrence clearly indicates that the chronic deoxygenation events in the Berre lagoon, and the resulting degraded ecological state of the benthic ecosystem are driven both by the benthic O2 demand and by the intensity and duration of the water column stratification.

Denitrification, Nitrogen Uptake, and Organic Matter Quality Undergo Different Seasonality in Sandy and Muddy Sediments of a Turbid Estuary.

The interaction between microbial communities and benthic algae as nitrogen (N) regulators in poorly illuminated sediments is scarcely investigated in the literature. The role of sediments as sources or sinks of N was analyzed in spring and summer in sandy and muddy sediments in a turbid freshwater estuary, the Curonian Lagoon, Lithuania. Seasonality in this ecosystem is strongly marked by phytoplankton community succession with diatoms dominating in spring and cyanobacteria dominating in summer. Fluxes of dissolved gas and inorganic N and rates of denitrification of water column nitrate (Dw) and of nitrate produced by nitrification (Dn) and sedimentary features, including the macromolecular quality of organic matter (OM), were measured. Shallow/sandy sites had benthic diatoms, while at deep/muddy sites, settled pelagic microalgae were found. The OM in surface sediments was always higher at muddy than at sandy sites, and biochemical analyses revealed that at muddy sites the OM nutritional value changed seasonally. In spring, sandy sediments were net autotrophic and retained N, while muddy sediments were net heterotrophic and displayed higher rates of denitrification, mostly sustained by Dw. In summer, benthic oxygen demand increased dramatically, whereas denitrification, mostly sustained by Dn, decreased in muddy and remained unchanged in sandy sediments. The ratio between denitrification and oxygen demand was significantly lower in sandy compared with muddy sediments and in summer compared with spring. Muddy sediments displayed seasonally distinct biochemical composition with a larger fraction of lipids coinciding with cyanobacteria blooms and a seasonal switch from inorganic N sink to source. Sandy sediments had similar composition in both seasons and retained inorganic N also in summer. Nitrogen uptake by microphytobenthos at sandy sites always exceeded the amount loss via denitrification, and benthic diatoms appeared to inhibit denitrification, even in the dark and under conditions of elevated N availability. In spring, denitrification attenuated N delivery from the estuary to the coastal area by nearly 35%. In summer, denitrification was comparable (~100%) with the much lower N export from the watershed, but N loss was probably offset by large rates of N-fixation.

Spatial and seasonal variability of sedimentary features and nitrogen benthic metabolism in a tropical coastal area (Taganga Bay, Colombia Caribbean) impacted by a sewage outfall

The effects of anthropogenic pressures in coastal areas are extensively studied in temperate but not in tropical zones, where their impact might be amplified by high water temperatures and upwelling phenomena. Sedimentary features and benthic metabolism were studied during the non upwelling (NUPW) and upwelling (UPW) seasons in Taganga Bay (Colombia). The bay is impacted by a submarine outfall of virtually untreated, organic and nutrient-rich wastewater. Samplings were performed in November 2017 (NUPW) and in January–February 2018 (UPW) at 4 stations located in the proximity and 100, 750 and 1800 m far from the outfall, respectively, at depths between 22 and 28 m. Aerobic respiration, denitrification, dissimilative nitrate reduction to ammonium (DNRA) and nutrient fluxes were measured. The influence of the outfall was detectable 750 and 1800 m away from the point pollution source, where δ13C data suggested that ~ 40 and ~ 20% of organic inputs were terrigenous, respectively. In the proximity of the outfall benthic oxygen demand peaked and the presence of Beggiatoa mats suggested reoxidation of sulphides, that were abundant in pore water. Under sulfidic conditions, DNRA was the major driver of nitrate demand, whereas at stations far from the outfall, denitrification dominated nitrate consumption. Organic matter and nitrate inputs to the bay during the UPW season enhanced the effects of the outfall by increasing aerobic respiration and DNRA. Higher N availability during the UPW season reversed fluxes of molecular nitrogen and turned the sediments of 3 out of 4 sites from net sinks to net N2 sources. Results from this study suggest that the analysis of sediments allows tracing the impact of the outfall and that such impact is enhanced during the upwelling season. In tropical areas, marine outfalls and upwelling may act in synergy and contribute to ecosystem deterioration due to high temperatures, increase of microbial respiration, sulphide toxicity and benthic biodiversity loss.

Sulfide production kinetics and model of stormwater retention ponds.

Stormwater retention ponds can play a critical role in mitigating the detrimental effects of urbanization on receiving waters that result from increases in polluted runoff. However, the benthic oxygen demand of stormwater facilities may cause significant hypoxia and trigger the production of hydrogen sulfide (H2S). This process is not well-documented and further research is needed to characterize benthic processes in stormwater retention ponds in order to improve their design and operation. In this study, sediment oxygen demand (SOD), sediment ammonia release (SAR) and sediment sulfide production (SSP) kinetics were characterized in situ and in the laboratory. In situ SOD and SSP data were utilized to develop a stormwater retention pond water sulfide concentration model which demonstrates strong correlation with sulfide concentrations observed in situ (r = 0.724, N = 91, p < 0.001) and in laboratory experiments (r = 0.691, N = 38, p < 0.001). At 4 °C, in situ rates of SOD, SAR and SSP were higher than those measured in laboratory. Sulfate-reducing bacteria (SRB) represented 4.99% of the bacteria present in the top 30 cm of the pond sediment, with Desulfobulbaceae spp., Desulfobacteraceae spp. and Desulfococcus spp. being the dominant SRB taxa identified.

Linking nutrient loading and oxygen in the coastal ocean: A new global scale model

AbstractRecent decades have witnessed an exponential spread of low‐oxygen regions in the coastal ocean due at least in‐part to enhanced terrestrial nutrient inputs. As oxygen deprivation is a major stressor on marine ecosystems, there is a great need to quantitatively link shifts in nutrient loading with changes in oxygen concentrations. To this end, we have developed and here describe, evaluate, and apply the Coastal Ocean Oxygen Linked to Benthic Exchange And Nutrient Supply (COOLBEANS) model, a first‐of‐its‐kind, spatially explicit (with 152 coastal segments) model, global model of coastal oxygen and nutrient dynamics. In COOLBEANS, benthic oxygen demand (BOD) is calculated using empirical models for aerobic respiration, iron reduction, and sulfate reduction, while oxygen supply is represented by a simple parameterization of exchange between surface and bottom waters. A nutrient cycling component translates shifts in riverine nutrient inputs into changes in organic matter delivery to sediments and, ultimately, oxygen uptake. Modeled BOD reproduces observations reasonably well (Nash‐Sutcliffe efficiency = 0.71), and estimates of exchange between surface and bottom waters correlate with stratification. The model examines sensitivity of bottom water oxygen to changes in nutrient inputs and vertical exchange between surface and bottom waters, highlighting the importance of this vertical exchange in defining the susceptibility of a system to oxygen depletion. These sensitivities along with estimated maximum hypoxic areas that are supported by present day nutrient loads are consistent with existing hypoxic regions. Sensitivities are put into context by applying historic changes in nitrogen loading observed in the Gulf of Mexico to the global coastal ocean, demonstrating that such loads would drive many systems anoxic or even sulfidic.

Oxygen, carbon, and nutrient exchanges at the sediment–water interface in the Mar Piccolo of Taranto (Ionian Sea, southern Italy)

In the shallow environment, the nutrient and carbon exchanges at the sediment-water interface contribute significantly to determine the trophic status of the whole water column. The intensity of the allochthonous input in a coastal environment subjected to strong anthropogenic pressures determines an increase in the benthic oxygen demand leading to depressed oxygen levels in the bottom waters. Anoxic conditions resulting from organic enrichment can enhance the exchange of nutrients between sediments and the overlying water. In the present study, carbon and nutrient fluxes at the sediment-water interface were measured at two experimental sites, one highly and one moderately contaminated, as reference point. In situ benthic flux measurements of dissolved species (O2, DIC, DOC, N-NO3 (-), N-NO2 (-), N-NH4 (+), P-PO4 (3-), Si-Si(OH)4, H2S) were conducted using benthic chambers. Furthermore, undisturbed sediment cores were collected for analyses of total and organic C, total N, and biopolymeric carbon (carbohydrates, proteins, and lipids) as well as of dissolved species in porewaters and supernatant in order to calculate the diffusive fluxes. The sediments were characterized by suboxic to anoxic conditions with redox values more negative in the highly contaminated site, which was also characterized by higher biopolymeric carbon content (most of all lipids), lower C/N ratios and generally higher diffusive fluxes, which could result in a higher release of contaminants. A great difference was observed between diffusive and in situ benthic fluxes suggesting the enhancing of fluxes by bioturbation and the occurrence of biogeochemically important processes at the sediment-water interface. The multi-contamination of both inorganic and organic pollutants, in the sediments of the Mar Piccolo of Taranto (declared SIN in 1998), potentially transferable to the water column and to the aquatic trophic chain, is of serious concern for its ecological relevance, also considering the widespread fishing and mussel farming activities in the area.

Assessing biophysical controls on Gulf of Mexico hypoxia through probabilistic modeling.

A mechanistic model was developed to predict midsummer bottom-water dissolved oxygen (BWDO) concentration and hypoxic area on the Louisiana shelf of the northern Gulf of Mexico, USA (1985-2011). Because of its parsimonious formulation, the model possesses many of the benefits of simpler, more empirical models, in that it is computationally efficient and can rigorously account for uncertainty through Bayesian inference. At the same time, the model incorporates important biophysical processes such that its parameterization can be informed by field-measured biological and physical rates. The model is used to explore how freshwater flow, nutrient load, benthic oxygen demand, and wind velocity affect hypoxia on the western and eastern sections of the shelf, delineated by the Atchafalaya River outfall. The model explains over 70% of the variability in BWDO on both shelf sections, and outperforms linear regression models developed from the same input variables. Model results suggest that physical factors (i.e., wind and flow) control a larger portion of the year-to-year variability in hypoxia than previously thought, especially on the western shelf, though seasonal nutrient loads remain an important driver of hypoxia, as well. Unlike several previous Gulf hypoxia modeling studies, results do not indicate a temporal shift in the system's propensity for hypoxia formation (i.e., no regime change). Results do indicate that benthic oxygen demand is a substantial BWDO sink, and a better understanding of the long-term dynamics of this sink is required to better predict how the size of the hypoxic zone will respond to proposed reductions in nutrient loading.

Contribution of surface leaf-litter breakdown and forest composition to benthic oxygen demand and ecosystem respiration in a South Georgia blackwater river

Many North American blackwater rivers exhibit low dissolved O2 (DO) that may be the result of benthic respiration. We examined how tree species affected O2 demand via the quantity and quality of litter produced. In addition, we compared areal estimates of surface leaf-litter microbial respiration to sediment O2 demand (SOD) and ecosystem respiration (ER) in stream and swamp reaches of a blackwater river to quantify contributions of surface litter decomposition to O2 demand. Litter inputs averaged 917 and 678 g m−2 y−1 in the swamp and stream, respectively. Tree species differentially affected O2 demand via the quantity and quality of litter produced. Bald cypress (Taxodium distichum) contributed most litter inputs because of its dominance and because it produced more litter per tree, thereby making greater relative contributions to O2 demand in the swamp. In the stream, water oak (Quercus nigra) produced litter supporting lower fungal biomass and O2 uptake rates, but produced more litter than red maple (Acer rubrum). Breakdown rates in the swamp were faster, whereas standing stock decreases were lower than in the stream, indicating greater organic matter retention. Surface litter microbial respiration accounted for 89% of SOD (6.37 g O2 m−2 d−1), and 57 to 89% of ER in the swamp. Our findings suggest that surface litter drives the majority of O2 demand in some blackwater swamps, and tree species with higher rates of litterfall may make larger contributions to ER. Forested swamps may be hotspots of O2 demand in blackwater rivers because low water velocities enhance retention.

Feedback Mechanisms Between Cyanobacterial Blooms, Transient Hypoxia, and Benthic Phosphorus Regeneration in Shallow Coastal Environments

We investigated the dissolved oxygen metabolism of the Curonian Lagoon (Baltic Sea) to assess the relative contributions of pelagic and benthic processes to the development of transient hypoxic conditions in shallow water habitats. Metabolism measurements along with the remote sensing-derived estimates of spatial variability in chlorophyll a were used to evaluate the risk of hypoxia at the whole lagoon level. Our data demonstrate that cyanobacterial blooms strongly inhibit light penetration, resulting in net heterotrophic conditions in which pelagic oxygen demand exceeds benthic oxygen demand by an order of magnitude. The combination of bloom conditions and reduced vertical mixing during calm periods resulted in oxygen depletion of bottom waters and greater sediment nutrient release. The peak of reactive P regeneration (nearly 30 μmol m−2 h−1) coincided with oxygen depletion in the water column, and resulted in a marked drop of the inorganic N:P ratio (from >40 to <5, as molar). Our results suggest a strong link between cyanobacterial blooms, pelagic respiration, hypoxia, and P regeneration, which acts as a feedback in sustaining algal blooms through internal nutrient cycling. Meteorological data and satellite-derived maps of chlorophyll a were used to show that nearly 70 % of the lagoon surface (approximately 1,000 km2) is prone to transient hypoxia development when blooms coincide with low wind speed conditions.

Anammox, denitrification and fixed-nitrogen removal in sediments from the Lower St. Lawrence Estuary

Abstract. Incubations of intact sediment cores and sediment slurries reveal that anammox is an important sink for fixed nitrogen in sediments from the Lower St. Lawrence Estuary (LSLE), where it occurs at a rate of 5.5 ± 1.7 µmol N m−2 h−1. Canonical denitrification occurs at a rate of 11.3 ± 1.1 µmol N m−2 h−1, and anammox is thus responsible for up to 33% of the total N2 production. Both anammox and denitrification are mostly (&gt; 95%) fueled by nitrate and nitrite produced in situ through benthic nitrification. Nitrification accounts for &gt; 15% of the benthic oxygen demand and may, therefore, contribute significantly to the development and maintenance of hypoxic conditions in the LSLE. The rate of dissimilatory nitrate reduction to ammonium is three orders of magnitude lower than denitrification and anammox, and it is insignificant to N-cycling. NH4+ oxidation by sedimentary Fe(III) and Mn(III/IV) in slurry incubations with N isotope labels did not occur at measurable rates; moreover, we found no evidence for NH4+ oxidation by added Mn(III)-pyrophosphate.

Relative importance of pelagic and sediment respiration in causing hypoxia in a deep estuary

Oxygen depletion in the 100‐m thick bottom layer of the deep Lower St. Lawrence Estuary is currently thought to be principally caused by benthic oxygen demand overcoming turbulent oxygenation from overlying layers, with pelagic respiration playing a secondary role. This conception is revisited with idealized numerical simulations, historical oxygen observations and new turbulence measurements. Results indicate that a dominant sediment oxygen demand, over pelagic, is incompatible with the shape of observed oxygen profiles. It is further argued that to sustain oxygen depletion, the turbulent diffusivity in the bottom waters should be ≪10−4 m2 s−1, consistent with direct measurements but contrary to previous model results. A new model that includes an Arrhenius‐type function for pelagic respiration and a parameterization for turbulence diffusivity is developed. The model demonstrates the importance of the bottom boundary layer in reproducing the shape of oxygen profiles and reproduces to within 14% the observed change in oxygen concentration in the Lower St. Lawrence Estuary. The analysis indicates that turbulent oxygenation represents about 8% of the sum of sediment and pelagic oxygen demand, consistent with the low turbulent oxygenation required to maintain oxygen depletion. However, contrary to previous hypotheses, it is concluded that pelagic oxygen demand needs to be five time larger than sediment oxygen demand to explain hypoxia in the 100‐m thick bottom layer of the Lower St. Lawrence Estuary.

Chlorophyll, lipid profiles and bioturbation in sediments around a fish cage farm in the Gulf of Eilat, Israel

Sediment biogeochemical processes were measured on a transect of 4 stations FF 20W, 40W and 80W (number is metres from the fish farm, FF, to the west) at the Ardag gilthead seabream Sparus aurata farm in the Gulf of Aqaba, a highly oligotrophic system renowned for its clear water and diverse corals. At each station samples were taken for analysis of macrofaunal community and benthic oxygen demand, together with depth profiles of CHN, porosity, chlorophyll a and fatty acids. The macrobenthos was dominated by the small marine snail Nassarius sinusigerus. In contrast to many fish farms in temperate waters, a large abundance of small, opportunist worms was not observed near the fish farm although sulphide oxidising bacteria Beggiatoa spp. were observed. Oxygen demands (108–154mmolm−2d−1) near the farm were lower than those observed elsewhere despite the high water temperature (~26°C). Bioturbation rates derived from chlorophyll profiles were low (0.013–0.069cm2d−1) compared to results from a farm in Scotland as a consequence of the much lower infaunal abundance. Porosity, organic carbon and carbon/nitrogen ratio profiles showed clear discrimination between the stations near the cages (FF and 20W) and those more distant. A Multi-Dimensional Scaling plot of 31 sediment fatty acid concentrations from each of the 4 stations (averaged to 4cm sediment depth) shows a trend in fatty acid composition that allows good discrimination between 80W, 40W and the two stations near the farm, which overlap. An increase in the proportion of bacterial fatty acids with distance from the farm indicates a change from profiles dominated by farm wastes (with a high proportion of fish feed derived mono-unsaturated fatty acids) near the farm to background conditions where the profiles are dominated by benthic biomass. The data presented are discussed by contrasting these with earlier studies in mesotrophic systems. The results indicate that the Pearson–Rosenberg paradigm of benthic succession may be altered owing to the dominance of the benthos by N. sinusigerus and low animal abundance and so benthic indicators of impact would have to be tailored for the characteristics of this environment. Sediment water content, organic carbon content, C/N ratios and fatty acids all showed trends with distance from the farm and could be considered as indicators, as could the density of N. sinusigerus and the presence of Beggiatoa sp. mats.

Sedimentary phosphorus dynamics and the evolution of bottom‐water hypoxia: A coupled benthic–pelagic model of a coastal system

The present study examines oxygen and phosphorus dynamics at a seasonally hypoxic site in the Arkona basin of the Baltic Sea. A coupled benthic–pelagic reactive‐transport model is used to describe the evolution of bottom‐water solute concentrations, as well as pore‐water and sediment profiles. Aerobic respiration dominates remineralization, with iron reduction, denitrification, and sulphate reduction playing secondary roles, while other pathways are negligible. Sediments represent a significant oxygen sink chiefly due to the aerobic degradation of organic matter, as well as nitrification and iron oxyhydroxide precipitation. Most phosphorus deposited in sediments is in organic matter, yet cycling is dominated by iron‐bound phosphorus due to rapid dissimilatory iron reduction coupled with aerobic iron oxyhydroxide formation. Sustained hypoxia results in an initial decrease in sediment phosphorus content due to dissolution of phosphorus‐bearing iron oxyhydroxides, resulting in a pulse of phosphate to overlying waters. Although an organic‐rich layer is formed under low‐oxygen conditions, enhanced remineralization of organic phosphorus relative to organic carbon tempers sedimentary phosphorus accumulation. Upon reoxygenation of bottom waters after a decade of sustained hypoxia, oxygen concentrations do not immediately achieve values observed prior to hypoxia because the organic‐rich layer creates a higher benthic oxygen demand. Artificial reoxygenation of bottom waters leads to a substantial increase in the iron‐bound phosphorus pool; the total phosphorus content of the sediment, however, is unaffected. A relapse into hypoxia would consequently produce a large pulse of phosphate to the overlying waters potentially exacerbating the situation.

Influence of the organic matter composition on benthic oxygen demand in the Rhône River prodelta (NW Mediterranean Sea)

Measurements of diffusive (DOU) and total (TOU) sediment oxygen uptakes, oxygen penetration depth, porosity, OC, TN, carbohydrate, lipid, amino acid, chlorophyll a and pheophytin a concentrations were assessed in surface sediments at 9 stations located in the Rhône River prodelta and the adjacent continental shelf during April 2007 (a period characterized by low flow and discharge regimes). Our results show that sedimentary organics in the Rhône River prodelta were mainly fueled by a single source of OM, namely continental inputs. Those inputs were relatively labile and decreased following an inshore–offshore gradient. The descriptors of sedimentary organics mostly resulted from dilution and degradation processes affecting OM during its transfer from the mouth of the Rhône River. TOU/DOU ratios were close to one, with a slight increase at offshore stations. This is coherent with the limitation of bioirrigation in response to organic enrichment. DOU correlated best with bulk quantitative descriptors of sedimentary organics, which probably resulted from the overall correlation between all biochemical descriptors linked with the predominance of a single source of organic matter in the whole studied area. Nevertheless, an influence of Chl a and Pheo a contents on oxygen consumptions, possibly due to freshwater or/and marine primary production, is not to be excluded. These small fractions (<0.08‰ to total OM) could then be responsible for the oxygen consumption, even if not visible in classical measurements as δ 13C or C/N.

Oxygen uptake from aquatic macrophyte decomposition from Piraju Reservoir (Piraju, SP, Brazil)

The kinetics of oxygen consumption related to mineralisation of 18 taxa of aquatic macrophytes (Cyperus sp, Azolla caroliniana, Echinodorus macrophyllus, Eichhornia azurea, Eichhornia crassipes, Eleocharis sp1, Eleocharis sp2, Hetereanthera multiflora, Hydrocotyle raniculoides, Ludwigia sp, Myriophyllum aquaticum, Nymphaea elegans, Oxycaryum cubense, Ricciocarpus natans, Rynchospora corymbosa, Salvinia auriculata, Typha domingensis and Utricularia foliosa) from the reservoir of Piraju Hydroelectric Power Plant (São Paulo state, Brazil) were described. For each species, two incubations were prepared with ca. 300.0 mg of plant (DW) and 1.0 L of reservoir water sample. The incubations were maintained in the dark and at 20 ºC. Periodically the dissolved oxygen (DO) concentrations were measured; the accumulated DO values were fitted to 1st order kinetic model and the results showed that: i) high oxygen consumption was observed for Ludwigia sp (533 mg g-1 DW), while the lowest was registered for Eleocharis sp1 (205 mg g-1 DW) mineralisation; ii) the higher deoxygenation rate constants were verified in the mineralisation of A. caroliniana (0.052 day-1), H. raniculoides (0.050 day-1) and U. foliosa (0.049 day-1). The oxygen consumption rate constants of Ludwigia sp and Eleocharis sp2 mineralisation (0.027 day-1) were the lowest. The half-time of oxygen consumption varied from 9 to 26 days. In the short term, the detritus of E. macrophyllus, H. raniculoides, Ludwigia sp, N. elegans and U. foliosa were the critical resources to the reservoir oxygen demand; while in the long term, A. caroliniana, H. multiflora and T. domingensis were the resources that can potentially contribute to the benthic oxygen demand of this reservoir.

A multiple biomarker approach to tracking the fate of an ice algal bloom to the sea floor

In ice-covered Arctic seas, the ice algal production can be the main input of organic matter to the ecosystem. Pelagic–benthic coupling is thought to be particularly tight in those areas. The increase in ice algal production in Franklin Bay from January/February to April/May 2004 paralleled an increase in benthic oxygen demand. However, sedimentary chlorophyll a, which is usually an indicator of “fresh” organic matter inputs to the sea floor, did not increase. Consequently, it was asked what was the fate of the ice algal phytodetritus arriving at the sea floor? To answer this question, photosynthetic pigments from the sea ice, water column particulate organic matter, and sediment, as well as diatom frustules in the sediment, were studied from January to May 2004. The number of ice diatom cells in the sediment showed an increase in April/May, confirming higher inputs of fresh ice algae to the sediment. Changes in sedimentary pigment profiles in the first 10 cm suggested an increase in bioturbation due to enhanced benthic activities. Finally, the decrease in the ratio of chlorophyll a to phaeophorbide a implied an increase in macrobenthic activity. Benthic macrofauna consumed some of the deposited material and mixed some within the top five cm of sediment. The response of sedimentary pigments to an ice algal input can be studied at different levels and it is only the combination of these studies that will allow an understanding of the overall fate of phytodetritus in the benthic compartment.

The continental shelf benthic iron flux and its isotope composition

Benthic iron fluxes from sites along the Oregon–California continental shelf determined using in situ benthic chambers, range from less than 10 μmol m −2 d −1 to values in excess of ∼300 μmol m −2 d −1. These fluxes are generally greater than previously published iron fluxes for continental shelves contiguous with the open ocean (as opposed to marginal seas, bays, or estuaries) with the highest fluxes measured in the regions around the high-sediment discharge Eel River and the Umpqua River. These benthic iron fluxes do not covary with organic carbon oxidation rates in any systematic fashion, but rather seem to respond to variations in bottom water oxygen and benthic oxygen demand. We hypothesize that the highest rates of benthic iron efflux are driven, in part, by the greater availability of reactive iron deposited along these river systems as compared to other more typical continental margin settings. Bioirrigation likely plays an important role in the benthic Fe flux in these systems as well. However, the influence of bottom water oxygen concentrations on the iron flux is significant, and there appears to be a threshold in dissolved oxygen (∼60–80 μM), below which sediment–ocean iron exchange is enhanced. The isotope composition of this shelf-derived benthic iron is enriched in the lighter isotopes, and appears to change by ∼3‰ (δ 56Fe) during the course of a benthic chamber experiment with a mean isotope composition of −2.7 ± 1.1‰ (2 SD, n = 9) by the end of the experiment. This average value is slightly heavier than those from two high benthic Fe flux restricted basins from the California Borderland region where δ 56Fe is −3.4 ± 0.4‰ (2 SD, n = 3). These light iron isotope compositions support previous ideas, based on sediment porewater analyses, suggesting that sedimentary iron reduction fractionates iron isotopes and produces an isotopically light iron pool that is transferred to the ocean water column. In sum, our data suggest that continental shelves may export a higher efflux of iron than previously hypothesized, with the likelihood that along river-dominated margins, the benthic iron flux could well be orders of magnitude larger than non-river dominated shelves. The close proximity of the continental shelf benthos to the productive surface ocean means that this flux is likely to be essential for maintaining ecosystem micronutrient supply.

Changes in Bioturbation of Iron Biogeochemistry and in Molecular Response of the Clam Ruditapes decussates upon Perkinsus olseni Infection

A series of artificial microcosms was used to test the effect of clam density on benthic iron biogeochemistry and, subsequently, if the response of clam Ruditapes decussatus to infection with Perkinsus olseni, a common opportunistic parasite known to be iron dependent, was correlated with the dynamics of iron sediment pore waters within the chambers. Three series of benthic microcosms were used in the experiment, comparing similar densities of clams (none, one, two, three, or four individuals/chamber) between a control set (no deliberate infection) and two parallel sets of clams that were deliberately infected with the parasite after 10 days of incubation. Fifteen chambers were used simultaneously and the experiment was conducted for 35 days. In order to avoid spurious effects of differential organic loading and clam feeding efficiency on the oxidative state of the sediment, the iron balance was tentatively shifted during incubation toward decreased dissolved iron in pore water. This was done by applying a constant flow of air to all chambers and refraining from supplying extra organic matter during the experimental run, which led to the reduction of benthic oxygen demand as the experiment progressed. Results showed that microcosms bearing both higher clam densities and lower infection levels were able to exert a quantitative influence in iron biogeochemistry through bioturbation activity. This effect was significantly depressed in chambers hosting clams with high infection levels. In addition, analysis of molecular markers responsive to iron and parasite stress revealed an upper regulation of HSP70 and ferritin in infected clams, thus suggesting a role of those molecules on both host protection and response to parasite presence by limiting iron availability. Together, these findings suggest a correlation between the expression of clam molecular iron/stress markers and iron bioavailability, which can be modified by the presence or absence of Perkinsus infection. In turn, we propose that clam lethargy in response to parasite invasion might help to combat infection by reducing iron mobilization in the surrounding sediment through a decrease in bioturbation activity, thus reducing its availability to the parasite.