Beluga Population Research Articles

A Review of Science and Conservation Management for the Cumberland Sound Beluga Population

For many centuries, belugas, or white whales (Delphinapterus leucas), have been a major source of subsistence and cultural identity for the Inuit living along the shores of Cumberland Sound, southeastern Baffin Island. During the late 1800s and first half of the twentieth century, the whales were also heavily exploited commercially for their oil and skins. By the late 1960s and early 1970s it had become clear that the beluga population was greatly reduced from its historical abundance, and efforts began to limit the harvest and monitor the population. The purposes of this paper are to (i) provide a synthesis of developments in Cumberland Sound beluga science and harvest management since 1980 and (ii) describe and discuss efforts to improve the conservation status of the beluga population. Despite large investments in research since the transition to co-management under the Nunavut Agreement, much uncertainty and disagreement remains. Best scientific estimates of current beluga numbers are in the range of 1000 – 1500, with no clear evidence of an increasing or decreasing trend. Officially reported annual landings of harvested whales for the Baffin Island community of Pangnirtung in recent years have ranged between 15 (1993) and 52 (2006), with an average of around 40 whales. Ongoing known or potential threats identified by hunters and scientists include overharvest, ecosystem (including climate-driven) change, interactions with commercial fisheries, predation by killer whales, and stress due to vessel noise. Addressing these issues will require continued research and improved relations between Inuit and the government. Fresh approaches are needed. Newly available analytical and procedural tools may help to overcome longstanding issues that are deeply embedded in cultural and philosophical differences.

Harvester selection and observed mercury levels in Eastern Beaufort Sea and Western Hudson Bay beluga whales (Delphinapterus leucas)

Mercury in marine biota has been extensively studied across Inuit Nunaat because it bioaccumulates and biomagnifies in high trophic level species, such as the beluga whale (Delphinapterus leucas), or qilalugaq in Inuktut. Qilalugaait (pl) are a staple in many coastal Inuit communities, including Tuktoyaktuk, Northwest Territories and Arviat, Nunavut. We examine how total mercury (THg) concentrations in two beluga populations are influenced by biased sampling resulting from local harvester preferences. We examined historical THg in skin, muscle, and liver (1980's to 2022) together with local qualitative interviews from two beluga-harvesting communities. Age and length bins were used to compare similar sized and aged whales between locations, where males (350 - 400 cm, and 20–30 years) and females (330–400 cm, and 15–30 years) were segregated. The interviews revealed distinct preferences whereby harvesters in Tuktoyaktuk actively sought larger (length) male whales, whereas harvesters in Arviat, selected wide and even range across size and sex. These local preferences were also evident in the historical dataset, with the median age and lengths were 31 years and 389.0 cm in Tuktoyaktuk (n = 461) and 23 and 336.0 cm in Arviat (n = 146). For males, mean and median THg concentrations were higher in beluga harvested from Tuktoyaktuk than Arviat in all three tissues with age and lengths combined, yet in the selected age and length bins, there was no difference in mean and median THg in the muscle tissue, and in median liver THg. There were significant differences in mean and median skin THg and in mean liver THg concentrations between males. In female whales, THg concentrations did not differ between Tuktoyaktuk and Arviat (in ages and lengths combined and in selected age bins across all tissues), excluding median muscle THg concentration. This study indicated that differences in THg concentrations that were previously observed resulted from hunter preferences in these two communities.

Elucidating the sustainability of 700 y of Inuvialuit beluga whale hunting in the Mackenzie River Delta, Northwest Territories, Canada

Beluga whales play a critical role in the subsistence economies and cultural heritage of Indigenous communities across the Arctic, yet the effects of Indigenous hunting on beluga whales remain unknown. Here, we integrate paleogenomics, genetic simulations, and stable δ13C and δ15N isotope analysis to investigate 700 y of beluga subsistence hunting in the Mackenzie Delta area of northwestern Canada. Genetic identification of the zooarchaeological remains, which is based on radiocarbon dating, span three time periods (1290 to 1440 CE; 1450 to 1650 CE; 1800 to 1870 CE), indicates shifts across time in the sex ratio of the harvested belugas. The equal number of females and males harvested in 1450 to 1650 CE versus more males harvested in the two other time periods may reflect changes in hunting practices or temporal shifts in beluga availability. We find temporal shifts and sex-based differences in δ13C of the harvested belugas across time, suggesting historical adaptability in the foraging ecology of the whales. We uncovered distinct mitochondrial diversity unique to the Mackenzie Delta belugas, but found no changes in nuclear genomic diversity nor any substructuring across time. Our findings indicate the genomic stability and continuity of the Mackenzie Delta beluga population across the 700 y surveyed, indicating the impact of Inuvialuit subsistence harvests on the genetic diversity of contemporary beluga individuals has been negligible.

Exploring Drivers of Historic Mercury Trends in Beluga Whales Using an Ecosystem Modeling Approach.

While mercury occurs naturally in the environment, human activity has significantly disturbed its biogeochemical cycle. Inorganic mercury entering aquatic systems can be transformed into methylmercury, a strong neurotoxicant that builds up in organisms and affects ecosystem and public health. In the Arctic, top predators such as beluga whales, an ecologically and culturally significant species for many Inuit communities, can contain high concentrations of methylmercury. Historical mercury concentrations in beluga in the western Canadian Arctic's Beaufort Sea cannot be explained by mercury emission trends alone; in addition, they could potentially be driven by climate change impacts, such as rising temperatures and sea ice melt. These changes can affect mercury bioaccumulation through different pathways, including ecological and mercury transport processes. In this study, we explore key drivers of mercury bioaccumulation in the Beaufort Sea beluga population using Ecopath with Ecosim, an ecosystem modeling approach, and scenarios of environmental change informed by Western Science and Inuvialuit Knowledge. Comparing the effect of historical sea ice cover, sea surface temperature, and freshwater discharge time series, modeling suggests that the timing of historical increases and decreases in beluga methylmercury concentrations can be better explained by the resulting changes to ecosystem productivity rather than by those to mercury inputs and that all three environmental drivers could partially explain the decrease in mercury concentrations in beluga after the mid-1990s. This work highlights the value of multiple knowledge systems and exploratory modeling methods in understanding environmental change and contaminant cycling. Future work building on this research could inform climate change adaptation efforts and inform management decisions in the region.

Boating with whales: Exploring values, knowledge and behaviors of recreational boaters in the St. Lawrence Estuary and Saguenay Fjord using Q-methodology

The whales of the St. Lawrence Estuary in Quebec, Canada, including the resident beluga (Delphinapterus leucas) population, classified as endangered and continuing to decline, face many threats of anthropogenic origins, in particular underwater noise generated by boat engines. In order to better understand the impact of recreational boating on the St. Lawrence region and the marine species that live there, we used the Q-methodology to identify perspectives of boaters based on their behaviors. Boaters were questioned about their habits, knowledge and values, which are considered to be linked to their behavior. Three distinct boater categories resulted from the analysis: the eco-responsible, the self-centered, and the altruist, each named based on their prominent values. This study provides valuable insights into the motivations driving the behavior of recreational boaters, offering potential opportunities for government managers and NGOs to adjust their management strategies or awareness campaigns to encourage behavior that supports the conservation of whale species and the recovery of the beluga whale population.

Variations in thyroid hormone levels in endangered St. Lawrence Estuary belugas: Potential linkage with stress and organohalogen contaminant exposure

The St. Lawrence Estuary (SLE) beluga (Delphinapterus leucas) population is highly exposed to an array of contaminants that were identified as one of the causes to the non-recovery of this endangered and declining population. In the last decade, an increasing number of parturition-associated complications and calf mortality has been reported in this population. It was suggested that elevated exposure to organohalogens (e.g., the halogenated flame retardants polybrominated diphenyl ethers [PBDEs]) and stress could play a role in this phenomenon by perturbing thyroid hormones. The objective of this study was to investigate the impact of concentrations of organohalogen contaminants and stress (cortisol levels) on thyroid hormone variations in adult male and female SLE belugas. Because plasma could not be collected in SLE belugas for ethical reasons, skin biopsy (n = 40) was used as a less-invasive alternative matrix to determine organohalogens (PBDEs and other halogenated flame retardants, polychlorinated biphenyls, and organochlorine pesticides), cortisol, and thyroid hormones (triiodothyronine [T3] and thyroxine [T4]), and their metabolites reverse T3 and 3,5-diiodothyronine [3,5-T2]). Cortisol and thyroid hormones were analyzed by ultra-performance liquid chromatography-multiple reactions monitoring mass spectrometry (UPLC-MRM/MS). This method was compared using skin and plasma samples obtained from Arctic belugas. Comparisons of linear models showed that cortisol was a weak predictor for T4, rT3 and 3,5-T2. Specifically, there was a weak significant negative association between T4 and cortisol levels. Moreover, in male SLE belugas, a weak significant positive association was found between T3 and Σ34PBDE concentrations in skin. Our findings suggest that stress (i.e., elevated skin cortisol levels) along with organohalogen exposure (mainly PBDEs) may be associated with thyroid hormone level perturbations in skin of cetaceans.

Use of satellite imagery to estimate distribution and abundance of Cumberland Sound beluga whales reveals frequent use of a glacial river estuary

Limiting disturbance in critical habitats is an important part of ensuring the well-being and sustainability of populations at risk, such as Cumberland Sound beluga whales (Delphinapterus leucas). Using non-disruptive Very High Resolution (VHR) satellite imagery, an emerging tool in cetacean monitoring, we aimed to estimate summer abundance and identify critical habitat for Cumberland Sound beluga whales. Specifically we looked in fiords that comprise their summer distribution, such as Clearwater Fiord where there is a large estuary, an important habitat to many beluga populations. Satellite images of the area were collected in 2020 and 2021, at 30 cm resolution, and in 2022 at 50 cm resolution. We evaluated beluga whale distribution using Kernel density, and identified critical habitats as areas consistently part of the beluga whale core distribution across years. Clearwater Fiord abundance estimates were corrected for whales that were too deep to be identified in the images. The estimates were significantly lower in 2021 (197 whales, 95%CI: 180-216) and 2022 (194 whales, 95%CI: 172-218) compared to 2020 (393 whales, 95%CI: 366-422). Other fiords were only imaged in 2021 and 2022, resulting in average corrected abundance estimates for all fiords of 462 (95% CI: 425-502) and 252 (95%CI: 226-280) beluga whales, respectively. Downsampling of 30 cm images to 50 cm resulted in up to 45% fewer whales detected. The only critical habitat identified within the summer distribution was in Clearwater Fiord, in or near the estuary freshwater plume and in a bay to the west of the plume. The identified critical habitats should be areas of consideration in the continued discussion on the protection and sustainability of the Cumberland Sound beluga whale population.

Geographic variation in simple contact calls of Canadian beluga whales (Delphinapterus leucas)

AbstractBeluga whales, Delphinapterus leucas, are a highly social species with a complex and diverse vocal repertoire. Although extensively studied and classified, to date few attempts have been made to examine geographic variation in their calls. In this study, we examined geographic variation in simple contact calls (SCCs), specifically those that consist only of broadband pulsed trains, among four Canadian beluga populations from the Eastern Beaufort Sea (EBS), the Eastern High Arctic‐Baffin Bay, St. Lawrence Estuary (SLE), and the Western Hudson Bay. Five acoustic parameters were measured for each call and compared among populations using multivariate discriminant analysis. Results of our study indicate that there is a degree of variation in SCCs among these four populations, with the most geographically distant populations of the SLE and EBS displaying the greatest degrees of dissimilarity in SCC structure relative to geographically closer populations. Further, these results align with genetic variation of Canadian beluga populations previously described in the literature. This study is the first descriptive population comparison of SCCs for beluga and establishes a baseline for continued work into this developing area of research.

Communication in Cook Inlet beluga whales: Describing the vocal repertoire and masking of calls by commercial ship noise.

Many species rely on acoustic communication to coordinate activities and communicate to conspecifics. Cataloging vocal behavior is a first step towards understanding how individuals communicate information and how communication may be degraded by anthropogenic noise. The Cook Inlet beluga population is endangered with an estimated 331 individuals. Anthropogenic noise is considered a threat for this population and can negatively impact communication. To characterize this population's vocal behavior, vocalizations were measured and classified into three categories: whistles (n = 1264, 77%), pulsed calls (n = 354, 22%), and combined calls (n = 15, 1%), resulting in 41 call types. Two quantitative analyses were conducted to compare with the manual classification. A classification and regression tree and Random Forest had a 95% and 85% agreement with the manual classification, respectively. The most common call types per category were then used to investigate masking by commercial ship noise. Results indicate that these call types were partially masked by distant ship noise and completely masked by close ship noise in the frequency range of 0-12 kHz. Understanding vocal behavior and the effects of masking in Cook Inlet belugas provides important information supporting the management of this endangered population.

Identification of two novel papillomaviruses in belugas.

Papillomaviruses (PVs) can cause hyperplasia in the skin and mucous membranes of humans, mammals, and non-mammalian animals, and are a significant risk factor for cervical and genital cancers. Using next-generation sequencing (NGS), we identified two novel strains of papillomavirus, PV-HMU-1 and PV-HMU-2, in swabs taken from belugas (Delphinapterus leucas) at Polar Ocean Parks in Qingdao and Dalian. We amplified the complete genomes of both strains and screened ten belugas and one false killer whale (Pseudorca crassidens) for the late gene (L1) to determine the infection rate. In Qingdao, 50% of the two sampled belugas were infected with PV-HMU-1, while the false killer whale was negative. In Dalian, 71% of the eight sampled belugas were infected with PV-HMU-2. In their L1 genes, PV-HMU-1 and PV-HMU-2 showed 64.99 and 68.12% amino acid identity, respectively, with other members of Papillomaviridae. Phylogenetic analysis of combinatorial amino acid sequences revealed that PV-HMU-1 and PV-HMU-2 clustered with other known dolphin PVs but formed distinct branches. PVs carried by belugas were proposed as novel species under Firstpapillomavirinae. The discovery of these two novel PVs enhances our understanding of the genetic diversity of papillomaviruses and their impact on the beluga population.

Eastern High Arctic–Baffin Bay beluga whale (Delphinapterus leucas) estuary abundance and use from space

IntroductionThe Eastern High Arctic–Baffin Bay (EHA-BB) beluga whale (Delphinapterus leucas) population spends summer in estuaries around Somerset Island, Nunavut, Canada. A single abundance estimate from 1996 suggests an abundance >21,000 beluga whales; however, more information on abundance and distribution is needed to ensure effective management of this population, especially in estuaries where previous surveys provided minimal coverage. To assess the feasibility of using Very High Resolution (VHR) satellite imagery to obtain estuary abundance estimates for this beluga population, we evaluated a citizen science crowd counting initiative that was designed to monitor remote beluga whale populations and their estuary use.MethodsIn July and August 2020 the WorldView 2 and 3, and GeoEye 1 satellites were tasked to collect VHR imagery (30–41 cm) of estuaries previously known to be used by Eastern High Arctic–Baffin Bay beluga whales. The objectives were to obtain an estuary abundance estimate for this population from satellite imagery, and to evaluate the effectiveness of having imagery annotated using a crowd-source platform. Almost 3,800 km2of ocean imagery was analyzed using Maxar’s Geospatial Human Imagery Verification Effort (GeoHIVE) Crowdsourcing platform. Expert readers then manually compared counts to those performed by crowd-counters to determine variance in observer counts.Results and DiscussionThe estuary abundance estimate from 11 core estuaries was 12,128 (CV 36.76%, 95% confidence interval 6,036–24,368) beluga whales. This represents an estuary abundance estimate only, as the greater Peel Sound and Prince Regent Inlet areas were not photographed. The estuaries with the largest abundance of beluga whales were Creswell Bay, Maxwell Bay, and Prince Whales Island, with over 2,000 crowd-counted whales in each estuary. Although VHR imagery has potential to assist with surveying and monitoring marine mammals, for larger estuaries it was not always possible to photograph the entire area in a single day, and cloud cover was an issue for sections of most images. This work will assist with planning large-scale aerial surveys for monitoring beluga whale populations, identifying high-use areas and important beluga habitat, and highlights the utility of using VHR imagery to enhance our understanding of estuary abundance and distribution of Arctic whales.

Satellite image survey of beluga whales in the southern Kara Sea

AbstractThe use of satellite imagery to find, count and monitor whales in remote and hard to access areas has shown some promise, but few satellite studies have, as yet, provided substantial conservation outcomes. Recent studies have shown the ability of very high‐resolution satellites to detect and count previously surveyed populations of belugas and narwhals in Canada. Here we describe the detection of a large aggregation of a poorly surveyed population of belugas in the southern Kara Sea, Russia, in a region where Soviet whaling is known to have had a heavy toll on belugas. We counted over 1,100 surface belugas using very high‐resolution satellite imagery. As only an unknown portion of the belugas can be seen on the surface, accurately converting the surface count to an abundance estimate will need further study, but using the analog of aerial surveys we estimate that this aggregation is between ~1,150–2,870 individuals. Although the species is not currently considered endangered, concern over belugas future population trends is increasing, as the species is reliant on Arctic sea ice, which is rapidly declining due to climate change. This study shows the utility of satellite imagery to discover and monitor new and little‐known cetacean populations.

Low-to-Mid-Frequency Monopole Source Levels of Underwater Noise from Small Recreational Vessels in the St. Lawrence Estuary Beluga Critical Habitat.

Anthropogenic noise from navigation is a major contributor to the disturbance of the acoustic soundscape in underwater environments containing noise-sensitive life forms. While previous studies mostly developed protocols for the empirical determination of noise source levels associated with the world's commercial fleet, this work explores the radiated noise emitted by small recreational vessels that thrive in many coastal waters, such as in the St. Lawrence Estuary beluga population's summer habitat. Hydrophone-based measurements in the Saguenay River (QC, Canada) were carried out during the summers of 2021 and 2022. Shore-based observations identified 45 isolated transits of small, motorized vessels and were able to track their displacement during their passage near the hydrophone. Received noise levels at the hydrophone typically fell below the hearing audiogram of the endangered St. Lawrence Estuary beluga. Monopole source levels at low frequencies (0.1-≲2 kHz) held on average twice the acoustic power compared to their mid-frequency (≳2-30 kHz) counterparts. The speed over ground of recreational vessel showed a positive correlation with the back-propagated monopole source levels. Estimations of the mid-frequency noise levels based on low-frequency measurements should be used moderately.

Influence of anthropogenic activities on marine mammal strandings in the estuary and northwestern Gulf of St. Lawrence, Quebec, Canada, 1994–2008

Stranding records have long been used to monitor marine mammal mortalities and to help identify threats to populations. In coastal areas, marinemammals face numerous anthropogenic threats such as marine traffic and commercial fishing. The objective of this study was to investigate marinemammal stranding records from the St. Lawrence Estuary (SLE) and the northwestern Gulf of St. Lawrence (NWGSL), Quebec, Canada from 1994to 2008 for evidence of anthropogenic trauma caused by entanglement in fishing gear, ship collisions and gunshots. Of 1,590 marine mammalstranding records, 12% (n = 192) had evidence of anthropogenic trauma, most incidents being reported during summer when activities such asmarine traffic, most commercial fishing and recreational boating, occurred and a greater number of species were present in the area. These incidentswere classified into five categories (Incidental catch, Ship collision, Severe injury, Gunshot, Other). There were 1,245 mortalities and observationson carcasses suggested that anthropogenic trauma led to the death of 11% (141/1,245) of marine mammals: 14% (87/627) of cetaceans and 9%(54/618) of seals. Mortality of seals due to anthropogenic trauma was low, involving mainly Gunshot for grey (26% or 8/31) and harbour seals(26% or 8/31). Over the study period, marine mammal incidents with evidence of anthropogenic trauma increased significantly, driven by an increasein Incidental catch for two mysticete species, the common minke whale, 42% (39/92) and humpback whale, 13% (12/92) and Other for harbourporpoise 67% (16/24). Ship collision was the most common anthropogenic trauma for fin whales (22% or 8/36) and SLE beluga5 (22% or 8/36).Severe injury was reported for 22% (2/9) of small cetaceans and 78% (7/9) of seals. Evidence from some harbour porpoise stranding records(categorised as Other) suggests illegal hunting, incidental catch, predation or scavenging by grey seals in a marine protected area. The observedincrease in Incidental catch of common minke and humpback whales may be due to: (1) a shift in distribution of these two species into the SLE andNWGSL, possibly related to changes in the ecosystem; (2) changes in fishery practices; and (3) an increase in detection of marine mammal strandings.Anthropogenic trauma affecting marine mammals was documented including some species at risk, such as the harbour porpoise, the St. LawrenceEstuary beluga population, blue and North Atlantic right whales, in the St. Lawrence ecosystem including in a marine protected area. This studydemonstrates the usefulness of stranding records in helping to monitor human-caused mortality in marine mammal populations.

Beluga whale (Delphinapterus leucas) behaviour in the presence of whale-watching vessels

Beluga whales (Delphinapterus leucas) are social animals that return to the same estuaries each summer season. The Western Hudson Bay belugas in the Churchill River estuary appear to be attracted to boats, resulting in whale-watching being a popular tourism activity for the area. However, regulators have raised concerns about whether this activity has negative consequences on the beluga population. We hypothesized that more vulnerable groups, such as groups containing calves, would avoid whale-watching vessels, while juvenile groups, who appear to have a more developed curiosity, would be more likely to interact with vessels. To test these hypotheses, behavioural observations were conducted in 2019, 2020, and 2021, in the estuary using a similar methodology to a study conducted in 2005 and 2006. An increase in tourism since that initial study offered a unique opportunity to compare potential change over time. In this study, a group of whales was randomly selected; the group type, initial behaviour type, distance to vessel, and observed behaviour with distance to vessel during three-minute focal follows were recorded. The same method was also applied from shore and we compared frequencies of whale behaviour during experimental (vessels present) and control (vessels greater than 300m away) periods. Results showed that there was a significant difference in the mean group size of belugas in the presence of vessels compared to those observed in the absence of vessels. There was also a significant difference in beluga behaviour as well as a significant behavioural difference between age class of belugas in the presence of vessels, compared to their behaviour in absence of vessels. During focal follows from vessels, belugas spent 63% of their time interacting with vessels, when within 25 m of a vessel, an increase from the 48% observed from the previous study conducted 15 years previous. Our results overall showed beluga behaviour differed in the experimental compared to control settings but suggest that those belugas’ reactions to vessels are not necessarily deleterious to them, in that direct interactions with wildlife are low and unlikely to carry risk, and that they may have habituated to whale-watching vessels over the last two decades.

Social games that belugas (Delphinapterus leucas) play

ABSTRACT Play is an important indicator of physical strength, cognitive functioning, and overall welfare for animals. Performed independently or cooperatively, play provides animals, including humans, opportunities to test and practice various physical abilities, social interactions, and object investigations. One area that is often overlooked in animal play is the presence and nature of games. Sometimes considered the social glue of human cultures, games enable participants to practice different moves, cooperatively follow a shared set of rules, and have ‘fun.’ Using archived footage collected from a stable beluga population in managed care for nearly 15 years, we examined spontaneous, untrained social interactions (i.e. games played) between two or more belugas. Social games encompassed repeated, role exchanges that involved a set of rules developed and shared between the interactants. The belugas engaged in seven different games: locomotor-based games with and without contact, triadic play involving inanimate objects and water, and socio-sexual play. Although most social games involved immature animals, some games did occur with adults. This catalog and description of the variety of games played by belugas will enable us to understand the role social behavior has in behavioral development and individual animal welfare.

Estimating pregnancy rate from blubber progesterone levels of a blindly biopsied beluga population poses methodological, analytical and statistical challenges.

Beluga (Delphinapterus leucas) from the St. Lawrence Estuary, Canada, have been declining since the early 2000s, suggesting recruitment issues as a result of low fecundity, abnormal abortion rates or poor calf or juvenile survival. Pregnancy is difficult to observe in cetaceans, making the ground truthing of pregnancy estimates in wild individuals challenging. Blubber progesterone concentrations were contrasted among 62 SLE beluga with a known reproductive state (i.e. pregnant, resting, parturient and lactating females), that were found dead in 1997 to 2019. The suitability of a threshold obtained from decaying carcasses to assess reproductive state and pregnancy rate of freshly-dead or free-ranging and blindly-sampled beluga was examined using three statistical approaches and two data sets (135 freshly harvested carcasses in Nunavik, and 65 biopsy-sampled SLE beluga). Progesterone concentrations in decaying carcasses were considerably higher in known-pregnant (mean ± sd: 365 ± 244ng g-1 of tissue) than resting (3.1 ± 4.5ng g-1 of tissue) or lactating (38.4 ± 100ng g-1 of tissue) females. An approach based on statistical mixtures of distributions and a logistic regression were compared to the commonly-used, fixed threshold approach (here, 100ng g-1) for discriminating pregnant from non-pregnant females. The error rate for classifying individuals of known reproductive status was the lowest for the fixed threshold and logistic regression approaches, but the mixture approach required limited a priori knowledge for clustering individuals of unknown pregnancy status. Mismatches in assignations occurred at lipid content < 10% of sample weight. Our results emphasize the importance of reporting lipid contents and progesterone concentrations in both units (ng g-1 of tissue and ng g-1 of lipid) when sample mass is low. By highlighting ways to circumvent potential biases in field sampling associated with capturability of different segments of a population, this study also enhances the usefulness of the technique for estimating pregnancy rate of free-ranging population.

Estimating reproductive and juvenile survival rates when offspring ages are uncertain: A novel multievent mark‐resight model with beluga whale case study

Abstract Understanding the survival and reproductive rates of a population is critical to determining its long‐term dynamics and viability. Mark‐resight models are often used to estimate these demographic rates, but estimation of survival and reproductive rates is challenging, especially for wide‐ranging, patchily distributed, or cryptic species. In particular, existing mark‐resight models cannot accommodate data from populations in which offspring remain with parents for multiple years, are not always detected, and cannot be aged with certainty. Here we describe a Bayesian multievent mark‐resight modelling framework that uses all available adult and adult‐offspring sightings (including sightings with older offspring of uncertain age) to estimate reproductive rates and survival rates of adults and juveniles. We extend existing multievent mark‐resight models that typically only incorporate adult breeding state uncertainty by additionally accounting for age uncertainty in unmarked offspring and uncertainty in the duration of the mother‐offspring association. We describe our model in general terms and with a simple illustrative example, then apply it in a more complex empirical setting using 13 years of photo‐ID data from a critically endangered population of beluga whales Delphinapterus leucas. We evaluated model performance using simulated data under a range of sample sizes, and adult and offspring detection rates. Applying our model to the beluga data yielded precise estimates for all demographic rates of interest (despite substantial uncertainty in calf ages), including nonbreeder survival and reproductive rates lower than in other beluga populations. Simulations suggested our model yields asymptotically unbiased parameter estimates with good precision and low bias even with moderate sample sizes and detection rates. This work represents an important new development in multievent mark‐resight modelling, allowing estimation of reproductive and juvenile survival rates for populations with extended adult—offspring associations and uncertain offspring ages (e.g. some marine mammals, elephants, bears, great apes, bats and birds). Our model facilitated estimation of robust demographic rates for an endangered beluga population that were previously inestimable (e.g. nonbreeder and juvenile survival, reproductive rate) and that will yield new insights into this population's continued decline.

Investigating the relationship between the skin microbiome and flame retardant exposure of the endangered St. Lawrence Estuary beluga

The endangered beluga (Delphinapterus leucas) population in the St. Lawrence Estuary (SLE) in eastern Canada, the largest estuary in the world, is declining. Elevated tissue concentrations of a wide range of environmental contaminants, for example, halogenated flame retardants (HFRs) including polybrominated diphenyl ethers (PBDEs), might play a role in the non-recovery of this population. In mammals, HFRs have been reported to impair the metabolic regulation, including amino acid and fatty acid pathways. In the present study, we collected both blubber and skin swab samples from tissue biopsies from 56 adult SLE belugas and analyzed their blubber for the concentrations of a comprehensive suite of PBDEs and other HFRs. Using 16S rRNA marker and shotgun metagenomic approaches using skin swabs, we investigated, for the first time, the SLE beluga skin microbiome and the SLE water microbiome, providing valuable comparative taxonomic and functional microbiome information. We found that belugas have a unique skin microbiome that is distinct from surrounding SLE water, regardless of the beluga sex or location in the SLE. We further characterized the core microbiome of SLE beluga skin and surrounding SLE water, and identified bacterial taxa and gene functional pathways associated with the skin microbiome that correlated with beluga blubber HFR concentrations. Namely, we identified the phylum Nitrospinae and candidate phylum PAUC34f as potential taxa of interest that are associated with blubber HFR concentrations. We hypothesize that the biodegradation of HFRs within the beluga blubber and skin results in an increase in local metabolite concentrations that leads to the proliferation of Nitrospinae and PAUC32f. This work demonstrates the utility of studying the core microbiome of the SLE beluga skin using a swab method that could be adapted to field sampling. Further studies of the temporal effects of contaminant exposure on SLE beluga skin and SLE water microbiomes is warranted for potentially better monitoring and protecting this marine mammal which is at risk.

Serological Detection of Marine Origin Brucella Exposure in Two Alaska Beluga Stocks.

Simple SummaryBrucellosis, the disease caused by Brucella bacteria, is of emerging concern in marine-mammal populations worldwide due to its potential link to reproductive failure, yet is less well-studied than in terrestrial animals, such as cattle. To understand Brucella exposure and disease in two populations of beluga, in Bristol Bay and the eastern Chukchi Sea, Alaska, USA, this study screened animals for the presence of antibodies against the bacterium (serology), as well as tested for the direct presence of bacterial DNA or bacterial growth from tissue samples. More than half of all animals tested, from both populations, were positive for the presence of antibodies, providing evidence of exposure to Brucella. Few animals, however, were positive for the direct detection of Brucella DNA and none resulted in successful bacterial growth, suggesting a lack of active clinical disease. The high rate of exposure in these populations supports the need for long-term monitoring of beluga populations, particular those that are threatened or endangered, such as the Cook Inlet belugas.Among emerging threats to the Arctic is the introduction, spread, or resurgence of disease. Marine brucellosis is an emerging disease concern among free-ranging cetaceans and is less well-studied than terrestrial forms. To investigate marine-origin Brucella sp. exposure in two beluga stocks in Alaska, USA, this study used serological status as well as real-time polymerase chain reaction (rtPCR) and bacterial culture. In total, 55 live-captured–released belugas were tested for Brucella exposure in Bristol Bay (2008–2016) and 112 (8 live-captured; 104 subsistence-harvested) whales were tested in the eastern Chukchi Sea (2007–2017). In total, 73% percent of Bristol Bay live captures, 50% of Chukchi Sea live captures, and 66% of Chukchi Sea harvested belugas were positive on serology. Only 10 of 69 seropositive belugas were rtPCR positive in at least one tissue. Only one seropositive animal was PCR positive in both the spleen and mesenteric lymph node. All animals tested were culture negative. The high prevalence of seropositivity detected suggests widespread exposure in both stocks, however, the low level of rtPCR and culture positive results suggests clinical brucellosis was not prevalent in the belugas surveyed. Continued detection of Brucella exposure supports the need for long-term monitoring of these and other beluga populations.