Beaver Castor Canadensis Research Articles

Relics of beavers past: time and population density drive scale‐dependent patterns of ecosystem engineering

Like many ecological processes, natural disturbances exhibit scale‐dependent dynamics that are largely a function of the magnitude, frequency and scale at which they are assessed. Ecosystem engineers create patch‐scale disturbances that affect ecological processes, yet we know little about how these effects scale across space or vary through time. Here, we investigate how patch disturbances by beavers Castor canadensis, ecosystem engineers renowned for their pond‐creation behavior, affect ecological processes across space and time. We evaluated how beaver population recovery influenced surface water dynamics in relation to population density over 70 years across multiple spatial scales (pond, watershed and regional) in northern Minnesota. Surface water area was positively related to population density at the watershed scale; however, despite variation in beaver densities (and therefore surface water area) at the watershed scale, regional‐scale surface water area was stable through time. This stability appears to have been driven by asynchronous beaver density fluctuations among watersheds, combined with the increasing importance of abandoned ponds. Beavers initially created and occupied larger ponds with greater surface water area, but through time shifted towards occupying smaller ponds. As ponds accumulated on the landscape proportionally more surface water was stored within abandoned ponds, which offset the smaller size of occupied ponds. Beaver engineering – driven by density‐dependent mechanisms and the legacy effects from abandoned ponds – not only follows general patterns of patch disturbance dynamics by creating a spatial mosaic of patches, but the organism‐created mosaic also appears to generate ecological stability at greater spatial scales. We suggest restoring beavers to landscapes is a viable method for increasing surface water storage and will ultimately help advance numerous conservation and rewilding objectives. Our study demonstrates that ecosystem engineering effects can be scale‐dependent, indicating researchers should evaluate the ecological impact of engineers across diverse spatiotemporal scales to fully understand their functional roles in ecosystems.

Acoustic monitoring shows invasive beavers Castor canadensis increase patch‐level avian diversity in Tierra del Fuego

Abstract The North American beaver Castor canadensis is an invasive species in the Tierra del Fuego Archipelago. Due to this biological invasion, Argentina and Chile signed an agreement to restore affected ecosystems by eradicating beavers. In southern Patagonia, the beavers’ ecological impacts are well studied, but there is a relative lack of information on how their invasion (and potential removal) could affect bird communities. In the southern portion of Tierra del Fuego's ‘big island’ (Isla Grande), we conducted passive acoustic monitoring and avian point counts in intact riparian forests, beaver ponds and beaver meadows (i.e. drained ponds) to assess spatial and seasonal differences in acoustic activity and avian abundance, species diversity and functional diversity. During spring and summer, acoustic activity was significantly higher in meadows than in forests, with ponds exhibiting intermediate values. Abundance and species diversity exhibited similar patterns, driven largely by resident passerines, while functional diversity tended to be highest in ponds, largely due to ducks and raptors. Effects were weaker in fall and winter. Acoustic metrics exhibited moderate to strong correlations with all point‐count‐derived metrics. Synthesis and applications. At the patch level, the avian community was more abundant and diverse in beaver‐modified habitats than in intact riparian forests, though communities in modified patches may not differ substantially from those in analogous natural open and wetland habitats. Dam breaching and pond drainage did not yield a return to an intact forest bird community, indicating that active reforestation may be necessary to restore avian communities to pre‐beaver conditions in the short to medium term, as sought by the binational agreement. Given the immense challenges of eradication and restoration, its social‐ecological costs and benefits—including those related to avifauna—should be thoroughly considered in establishing goals or indicators of success.

Distribution patterns of the native Eurasian and the non-native North American beaver in Finland\u2014possible factors affecting the slow range expansion of the native species

Distribution patterns of species are affected by resource availability, dispersal, disturbance and population dynamics. The smaller population size and range of the native Eurasian beaver (Castor fiber) compared to the non-native North American beaver (Castor canadensis) in Finland raise questions on reasons for the slower range expansion of the native species. We compared the population growth rates and the spread of both species from their release sites. We also studied the factors possibly affecting the spread of the Eurasian beaver in South western Finland in more detail. We found that the North American beaver has spread longer distances than the Eurasian beaver, but we did not find evidence for movement barriers constraining the expansion rate of the native species. Lack of high-quality habitats does not seem to constrain the expansion to nearby areas either. Despite this, the Eurasian beaver population has grown to a high density close to its reintroduction site, and it has started to spread to novel areas only recently. We conclude that the expansion of the native beaver in Finland seems to be controlled by factors other than those related to barriers for movement: movement behavior and population dynamics, which require further investigation.

A non-invasive, DNA-based method for beaver species identification in Finland

For the ability to control an invasive species and to protect an ecologically similar native species it is essential to map the exact distributions of both species. This is difficult if the species are so morphologically similar that their identification in the field is almost impossible. In Finland, the invasive North American beaver Castor canadensis is spreading towards the range of the native Eurasian beaver Castor fiber and at present, these species are partly sympatric. Effective management of these morphologically similar species requires an efficient method for species identification, ideally one that is non-invasive. Non-invasive genetic methods are used in a wide variety of wildlife species, for example in the research of large carnivores. Feces are a good source of DNA for terrestrial animals, but for the semi-aquatic animals like beavers, feces are not the best option. However, environmental DNA (eDNA) has been successfully used to detect species non-invasively in aquatic and terrestrial environments. We developed a non-invasive, eDNA-based method to map the distribution of the beaver species in Finland and to investigate within-species genetic diversity. The eDNA was obtained from the feed remains (wood chips) from beaver forage sites. With the help of Citizen science, wood chip samples were collected from different parts of Finland. We used our eDNA method to identify the ranges of both beaver species. Additionally, the presence of Eurasian beavers in south-east Finland was proven for the first time. Our non-invasive eDNA method is an effective way to accurately identify the ranges of both beaver species and will allow for the control of the invasive North American beaver and conservation of the native Eurasian beaver in Finland.

Populations in stable and variable habitats: Green and common sandpiper in a beaver-influenced landscape

Stability of breeding habitat use and population variability was studied in two common wader species: green sandpiper Tringa ochropus and common sandpiper Actitis hypoleucos in a boreal lake area in southern Finland. The main natural driver of habitat disturbance in the area is an ecosystem engineer, the North American beaver Castor canadensis. We also studied the presence and abundance of green sandpipers before, during and after beaver-induced floods.In the studied landscape, the variable habitat created by beaver flooding appeared to have carrying capacity for a larger green sandpiper population than the more stable habitat for that of the common sandpiper. Common sandpipers made much use of the same lakes from year to year whereas the occupation of wetlands by the green sandpiper was more variable. The population of common sandpipers fluctuated more, although they inhabited the more stable environment. Green sandpiper pair numbers increased during beaver flooding, which suggests that they adapt rapidly to changes in breeding site availability. Some of the facilitating effects of the beaver appeared to remain 1–2 years after the flooding.

Assessing translocation effects on the spatial ecology and survival of muskrats Ondatra zibethicus

Muskrats Ondatra zibethicus are semiaquatic herbivores experiencing long-term and widespread population declines across North America. Translocation may be a viable tool to bolster or reestablish local populations; however, subsequent effects of translocation on muskrats are unknown. We live-trapped and translocated radiomarked muskrats (n = 65) during the summers of 2018–2019 in Voyageurs National Park, MN, USA and assessed post-translocation effects on weekly survival probabilities and space-use patterns. We did not observe homing behavior, though individuals moved an average of 2.2 km (SE = 0.30 km) from release sites and established home ranges within ∼8 days (SE = 1.16 days) post-translocation. Weekly post-translocation survival probabilities (0.95, SE = 0.001) and average home-range sizes (2.52 ha, SE = 0.44 ha) were similar to other studies of non-translocated muskrats. Our most-supported known-fate survival model revealed muskrats using beaver Castor canadensis lodges had greater weekly survival probabilities. Additionally, weekly muskrat survival varied between years suggesting a positive response to a novel soft-release technique applied in 2019. Our study provides the first empirical assessment of translocation effects on muskrats and suggests translocation may be effective for establishing or enhancing local muskrat populations. Additionally, our study suggests beaver lodges may confer fitness benefits to sympatric muskrats particularly during dispersal.

Functional Changes to the Slate Islands Provincial Park Ecosystem with Successive Arrival of Wolves, Canis lupus, from the Lake Superior Coast

Observations from 1974-2016 of Caribou (Rangifer tarandus) on the archipelago that comprises Slate Islands Provincial Park allowed us to infer direct and indirect effects of the arrival of Wolf (Canis lupus) pairs in winters of 1993-94 and 2003-04. Wolves created conditions that led to the near demise of Caribou from the islands, including some, but not all, behavioural changes in Caribou consistent with avoiding predators. Caribou on SIPP did not appear to return to calving locations near shoreline areas, nor use them to escape from Wolves by entering water. Shorelines and locations of Patterson Island near a Wolf-occupied Red Fox (Vulpes vulpes) den were the most common Caribou kill locations. Wolves also functionally shifted the ecosystem in Slate Islands Provincial Park via direct and indirect effects on North American Beavers (Castor canadensis), Red Foxes and Snowshoe Hares (Lepus americanus).

Size matters: When resource accessibility by ecosystem engineering elicits wood-boring beetle demographic responses.

Episodic natural disturbances play a key role in ecosystem renewal, and ecological engineering could do so by transforming resource accessibility. While such coupling creates nontrophic and lasting interactions between resource consumers and ecosystem engineers, it is unclear how large the disturbance must be to sustain such coupling. Natural disturbances that occur from the ecological engineering by the Canadian beaver (Castor canadensis) modulate deadwood dynamics in many forest ecosystems. Relying on such episodes of fresh woody debris, primary wood‐boring beetles, organisms that dig tunnels into those debris for reproduction, act as important deadwood decomposers in the ecosystem. Here, we investigate how the age and size of beaver disturbances act as predictors for primary wood‐boring beetle abundance and species richness around beaver‐altered habitat patches. To do so, we sampled beetles around 16 beaver‐disturbed and unaltered watercourses within the Kouchibouguac National Park (Canada) and modeled beetle demographic responses to site conditions and their physical characteristics, distance from the watercourse, deadwood biomass, and the geographical location of the sites. Our results indicate that the size of the disturbance is positively associated with beetle abundance, which highlights unique deadwood dynamics inherent to large beaver ponds. The role of beavers in forest ecosystems by reaching multiple taxa at multiple spatiotemporal scales further exemplifies the need to study nontrophic interactions and their complex consequences in ecosystem management.

Soil nematode functional diversity, successional patterns, and indicator taxa associated with vertebrate decomposition hotspots.

Decomposition of vertebrate remains is a dynamic process that creates localized soil enrichment zones. A growing body of literature has documented effects of vertebrate decomposition on soil pH, electrical conductivity, oxygen levels, nitrogen and carbon speciation, microbial biomass, and microbial successional patterns. However, relatively few studies have examined the microfaunal members of the soil food web that function as secondary consumers, specifically nematodes. Nematodes are often used as indicators of enrichment in other systems, and initial observations from vertebrate decomposition zones have indicated there is an effect on nematode communities. Our goal was to catalog decomposition-induced nematode succession and changes to alpha, beta, and functional diversity, and identify potential indicator taxa associated with decomposition progression. Six adult beaver (Castor canadensis) carcasses were allowed to decompose in a forest ecosystem for one year. During this period soil temperature, moisture, and electrical conductivity were monitored. Soils samples were taken at two depths in order to assess nematode community dynamics: 30-cm cores and 1-cm interface samples. Nematode abundance, alpha, beta, and functional diversity all responded to soil enrichment at the onset of active decay, and impacts persisted through skeletonization. After one year, nematode abundances and alpha diversity had recovered to original levels, however both community membership and functional diversity remained significantly altered. We identified seven indicator taxa that marked major transitions in decomposition progression. Enrichment of Rhabditidae (B1) and Diplogasteridae (B1) coupled with depletion in Filenchus (F2) characterized active and advanced decay prior to skeletonization in both cores and interface soils. Enrichment of Acrobeloides (B2), Aphelenchoides (F2), Tylencholaimidae (F4) and Seinura (P2) occurred during a narrow period in mid-skeletonization (day 153). Our study has revealed soil nematode successional patterns during vertebrate decomposition and has identified organisms that may function as indicator taxa for certain periods during decomposition.

Ecological Forecasts Reveal Limitations of Common Model Selection Methods: Predicting Changes in Beaver Colony Densities

Over the past two decades, there have been numerous calls to make ecology a more predictive science through direct empirical assessments of ecological models and predictions. While the widespread use of model selection using information criteria has pushed ecology toward placing a higher emphasis on prediction, few attempts have been made to validate the ability of information criteria to correctly identify the most parsimonious model with the greatest predictive accuracy. Here, we used an ecological forecasting framework to test the ability of information criteria to accurately predict the relative contribution of density dependence and density-independent factors (forage availability, harvest, weather, wolf [Canis lupus] density) on inter-annual fluctuations in beaver (Castor canadensis) colony densities. We modeled changes in colony densities using a discrete-time Gompertz model, and assessed the performance of four models using information criteria values: density-independent models with (1) and without (2) environmental covariates; and density-dependent models with (3) and without (4) environmental covariates. We then evaluated the forecasting accuracy of each model by withholding the final one-third of observations from each population and compared observed vs. predicted densities. Information criteria and our forecasting accuracy metrics both provided strong evidence of compensatory density dependence in the annual dynamics of beaver colony densities. However, despite strong within-sample performance by the most complex model (density-dependent with covariates) as determined using information criteria, hindcasts of colony densities revealed that the much simpler density-dependent model without covariates performed nearly as well predicting out-of-sample colony densities. The hindcast results indicated that the complex model over-fit our data, suggesting that parameters identified by information criteria as important predictor variables are only marginally valuable for predicting landscape-scale beaver colony dynamics. Our study demonstrates the importance of evaluating ecological models and predictions with long-term data and revealed how a known limitation of information criteria (over-fitting of complex models) can affect our interpretation of ecological dynamics. While incorporating knowledge of the factors that influence animal population dynamics can improve population forecasts, we suggest that comparing forecast performance metrics can likewise improve our knowledge of the factors driving population dynamics.

Ecosystem services provided by beavers Castor spp.

Abstract We aimed to recognise beaver‐produced ecosystem services and quantify their theoretical value for the entire Northern Hemisphere. Activity of the Eurasian beaver Castor fiber and the North American beaver Castor canadensis in the landscape provides ecosystem services and disservices. Services produced by beaver activity include water purification, moderation of extreme events, habitat and biodiversity provision, nutrient cycling, greenhouse gas sequestration, recreational hunting and fishing, water supply, and non‐consumptive recreation. Beaver‐produced services have not been compiled, analysed, or quantified previously. Each service we evaluated is worth millions to hundreds of millions of US dollars (USD) annually. Habitat and biodiversity provision (133 million USD), along with greenhouse gas sequestration (75 million USD), are particularly valuable services in absolute terms, while non‐consumptive recreation (167 USD ha−1) and habitat and biodiversity provision (133 USD ha−1) have the largest annual per‐hectare values. Our results can be used to broaden decision‐making and management perspectives, as we offer value estimates to wildlife managers and municipality planners for assessing local site‐specific beaver wetland values and the opportunities for their realisation. Implementing Payments for Ecosystem Services schemes offer a concrete way for societies to benefit from beaver‐produced services while concurrently compensating beaver‐produced losses accrued to landowners. Building such schemes offer long‐term realisation of ecosystem services and damage mitigation. This would lead to increased societal well‐being and increased conservation interest and efforts.

Sooner, closer, or longer: detectability of mesocarnivores at camera traps

AbstractCamera trapping, paired with analytical methods for estimating species occurrence, population size or density, can yield information with direct consequences for wildlife management and conservation. Detectability, the ability to detect a species or individual if it is present, affects the reliability and efficiency of camera trap surveys and, in turn, varies across species, space and time. Greater detectability means greater sample size, and a common approach to boost detectability of wildlife by camera traps involves the application of olfactory lures. Using a camera trap study on sympatric mesocarnivores (European badger Meles meles, red fox Vulpes vulpes, pine marten Martes martes and domestic cat Felis catus), we quantified three elements of detectability: (1) the time until first detection (‘sooner’, conditional on being present), (2) the proximity to a focal point in front of the camera (‘closer’, conditional on being detected) and (3) the duration of exposure to the camera (‘longer’, conditional on being detected). A hierarchical analytical approach and a quasi‐experimental setup allowed us to test for and quantify the species‐specific effect of olfactory lures on these aspects of detectability. Depending on species, average median time to first detection ranged from 4 to 28 days, distance to the focal point from 0.3 to 0.8 body lengths, and median time to departure from 2 to 6 seconds. Credible intervals overlapped substantially between most species in all three measures, and variation between observations was extensive. We detected effects of lures on time to first detection for cats (castoreum; American beaver Castor canadensis scent), distance to focal point for badgers (striped skunk Mephitis mephitis scent) and martens (castoreum, fox and skunk scents), and the duration of exposure for foxes (fox and skunk scents). We discuss how a multifaceted perspective on detectability in camera trap studies, linked with species biology, can give investigators a more structured approach to selecting and testing measures intended to boost detection probability.

Restoring wetland biodiversity using research: Whole‐community facilitation by beaver as framework

Abstract Wetlands are declining worldwide, and there is a great need for their restoration and creation. One natural agent of wetland engineering is beavers, Castor spp., which have returned or are returning to many parts of their former range. We initially studied the facilitative effect of the beaver Castor canadensis on a waterbird community consisting of three waders and four ducks in boreal wetlands in southern Finland. Both waterbird species diversity and abundance increased when beavers impounded a pond. Common teal Anas crecca and green sandpiper Tringa ochropus were the species showing the most positive numerical response, but the other five species also increased upon flooding. This article evaluates how the results of the study have been used in management, both in theory and practice. The whole‐community facilitation concept has been taken up in numerous articles considering the restorative effects of beavers. It has also been used as ecological background when planning and executing man‐made wetland projects in Finland within both the public and the private sectors. Our study and its publication in Aquatic Conservation: Marine and Freshwater Ecosystems have set a foundation for further evidence‐based management of waterbird communities. As the results show, having beavers as wetland managers is a feasible tool for creating and restoring wetlands for waterbirds and other biota. Moreover, wetland restoration projects are becoming more popular endeavours, owing to an understanding of the diverse benefits of wetlands. Flooding by beavers is used as a model for managers when creating man‐made wetlands; for example, in urban areas where it is difficult to maintain beavers.

Fall and Winter Movement Dynamics of Naturally Produced Spring Chinook Salmon Parr in Two Neighboring Interior Pacific Northwest Natal Rivers

AbstractOverwintering Pacific salmon Oncorhynchus spp. are vulnerable to mortality. Ecosystem degradation exacerbates salmonid vulnerability to mortality; thus, knowledge of winter movement dynamics is essential for guiding holistic management and restoration to safeguard population viability. In northeast Oregon, long‐term population performance metrics (e.g., survival) exist for parr of two neighboring Chinook Salmon O. tshawytscha populations (Catherine Creek [CC] and Grande Ronde River [GRR]); however, knowledge of their winter ecology is lacking. Our objective was to spatiotemporally characterize the movements and rearing distributions of naturally produced CC and GRR spring Chinook Salmon parr during fall and winter. Using radiotelemetry techniques (October–February), we identified the movement dynamics of CC (2009–2012) and GRR (2014–2016) spring Chinook Salmon fall migrants (i.e., parr overwintering downstream from natal areas). For both populations, median weekly linear range (i.e., movement) was high during fall migration, while sedentary behavior was associated with anchor and surface ice. Fall emigration occurred during declining thermographs, while overwintering parr movement and water temperature peaks were proximate. Fall migrant CC parr predominantly overwintered in the upper Grande Ronde Valley (GRV), while GRR conspecifics primarily reared upstream from the GRV. Extensive portions of CC and the GRR were not included in either population’s 99% kernel density estimate (KDE); however, each population’s 99% KDE extended into the lower GRV. The GRR population’s 50% KDE (i.e., core area) was small and proximate to several North American beaver Castor canadensis impoundments, while the CC population’s core area was relatively large and situated in the upper GRV. Overall, CC and GRR fall migrant populations exhibited divergent rearing and movement patterns; however, each population’s winter core area was proximate to lentic‐like habitats (e.g., beaver ponds). For Chinook Salmon parr, natal‐stream‐specific overwintering ecology knowledge appears critical to guide winter habitat conservation and restoration, while management for lentic‐like habitats may be advisable throughout the Pacific Northwest.

Vertebrate Species Richness at Littoral Beaver Lodges in a Temperate Artificial Pond

AbstractThe North American beaver Castor canadensis is widely recognized for its ability to modify freshwater habitats and facilitate changes in community composition. However, the seasonal composition of terrestrial wildlife at littoral beaver lodges remains poorly described, even though beaver lodges are distinctive semipermanent features of the terrestrial–aquatic interface and thus important resources for wildlife. Over 17 months, we used camera trapping, weather data, and satellite vegetation data to determine how vertebrate species richness and seasonal changes in community composition are associated with beaver activity and beaver lodges in a temperate artificial pond. Our results indicate clear changes in the composition of beaver lodge visitors across seasons. Moreover, there was not a strong association of species richness with beaver activity, vegetative condition, or weather condition. Littoral beaver lodges are likely important foraging sites for a wide range of taxa throughout the year. Our findings highlight the importance of beaver lodges in facilitating seasonal interactions and variation in species composition. We hope our work can be used as a baseline to investigate the importance of beaver lodges in promoting diversity at the terrestrial–aquatic interface.

Estimated economic impacts of seven invasive alien species in Chile

ABSTRACT This findings abstract presents preliminary estimates of the economic impact of seven invasive alien species (IAS) in Chile on productive sectors of the economy and biodiversity. The study was required by decision-makers as part of the research of the project “Strengthening National Frameworks for Invasive Alien Species Governance” funded by GEF (Global Environmental Facility). The impacts of beaver (Castor canadensis), rabbit (Oryctolagus cuniculus), wild boar (Sus scrofa), American mink (Neovison vison), yellow jacket (Vespula germanica), blackberry (Rubus spp.), and ulex (Ulex europaeus) were assessed. Few impacts could be estimated given the lack of information in Chile. Considering the impacts assessed, Chile may lose at least USD 90 million per year due to these seven IAS. Without implementing control measures, in 20 years, Chile will lose at least approximately USD 2 billion from the impacts of these species on biodiversity and productive sectors.

Effect of Beaver on Brook Trout Habitat in North Shore, Lake Superior, Streams

AbstractThe Brook Trout Salvelinus fontinalis is a native salmonid that provides a valued and productive sport fishery in northeastern Minnesota. Revival of North American beaver Castor canadensis (hereafter, “beaver”) populations since their near extermination and concern over their impacts on Brook Trout habitat prompted a reexamination of the complex ecological relationship where the two taxa interact. Suitable Brook Trout habitat is characterized by cold, spring‐fed water with silt‐free rocky substrate and abundant cover, all of which beaver may directly or indirectly affect. Data collection occurred on 79 stream sections (200 m each) and 21 beaver ponds spanning the North Shore of Lake Superior during the summer in 2017 and 2018. Habitat suitability index (HSI) models determined the average HSI and quantity of suitable Brook Trout habitat (m2/100 m2) at stream and beaver pond sites, and a bioenergetics model calculated Brook Trout growth availability (m2/100 m2) and mean growth (g/d) at stream sites. Classification regression trees identified significant thresholds at which beaver activity (e.g., number of dams upstream of sampled sites and beaver pond age) influenced the quantity or quality of Brook Trout habitat and growth. No significant variables were identified as affecting Brook Trout habitat or growth rates in stream sites. Alternatively, the quantity and quality of Brook Trout habitat in this region appeared to be influenced by microhabitat variables (depth, velocity, and temperature) that are eminent at individual stream sites. Brook Trout growth was strongly influenced by velocity (m/s) and mean prey concentration (mg dry mass/m3). Results indicated that 12 of the 21 sampled beaver ponds contained suitable Brook Trout habitat, with dissolved oxygen (mg/L) identified as a threshold. This study recommends focusing on individual stream characteristics and beaver pond dissolved oxygen concentrations to achieve desired Brook Trout habitat and aid in the development of management strategies pertaining to these two taxa in Lake Superior's North Shore streams.

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis

BackgroundLong noncoding RNAs (lncRNAs) have roles in gene regulation, epigenetics, and molecular scaffolding and it is hypothesized that they underlie some mammalian evolutionary adaptations. However, for many mammalian species, the absence of a genome assembly precludes the comprehensive identification of lncRNAs. The genome of the American beaver (Castor canadensis) has recently been sequenced, setting the stage for the systematic identification of beaver lncRNAs and the characterization of their expression in various tissues. The objective of this study was to discover and profile polyadenylated lncRNAs in the beaver using high-throughput short-read sequencing of RNA from sixteen beaver tissues and to annotate the resulting lncRNAs based on their potential for orthology with known lncRNAs in other species.ResultsUsing de novo transcriptome assembly, we found 9528 potential lncRNA contigs and 187 high-confidence lncRNA contigs. Of the high-confidence lncRNA contigs, 147 have no known orthologs (and thus are putative novel lncRNAs) and 40 have mammalian orthologs. The novel lncRNAs mapped to the Oregon State University (OSU) reference beaver genome with greater than 90% sequence identity. While the novel lncRNAs were on average shorter than their annotated counterparts, they were similar to the annotated lncRNAs in terms of the relationships between contig length and minimum free energy (MFE) and between coverage and contig length. We identified beaver orthologs of known lncRNAs such as XIST, MEG3, TINCR, and NIPBL-DT. We profiled the expression of the 187 high-confidence lncRNAs across 16 beaver tissues (whole blood, brain, lung, liver, heart, stomach, intestine, skeletal muscle, kidney, spleen, ovary, placenta, castor gland, tail, toe-webbing, and tongue) and identified both tissue-specific and ubiquitous lncRNAs.ConclusionsTo our knowledge this is the first report of systematic identification of lncRNAs and their expression atlas in beaver. LncRNAs—both novel and those with known orthologs—are expressed in each of the beaver tissues that we analyzed. For some beaver lncRNAs with known orthologs, the tissue-specific expression patterns were phylogenetically conserved. The lncRNA sequence data files and raw sequence files are available via the web supplement and the NCBI Sequence Read Archive, respectively.

The Currency of Conservation: How Is Landscape Extent Applied in Conservation Planning?

We asked how the concept of landscape extent is used in conservation planning. To narrow the scope of our review, we focused on four iconic species depicted on Canadian currency: the beaver (Castor canadensis), the caribou (Rangifer tarandus), the common loon (Gavia immer), and the polar bear (Ursus maritimus). Landscape ecology research suggests that a landscape is a species-specific construct arising from the spatial scales over which ecological processes occur. Species traits can be correlated with the scales of important effects and thus can identify relevant landscape extents for research and conservation. It is unclear, however, how the theoretical concept of landscape extent is applied in conservation practice. For the four iconic species in our study, we found an inconsistent use of species-specific traits in definitions of landscape extent for conservation planning. For two species, the caribou and the polar bear, species-specific traits were used to define conservation units, for defining either Designatable Units for assessment of at-risk status or for defining herds or subpopulations for management actions. No species-specific traits were identified in spatial frameworks used in loon or beaver conservation planning, as both were included in multi-species management approaches. Our review suggests a type of research implementation gap. Conservation units are often defined based on political or administrative boundaries rather than by species-specific processes. We suggest that landscape extent be implemented as a hypothesis in an adaptive management framework when possible. Additionally, we encourage research approaches that explicitly incorporate policy considerations into research design.

From the archive: Two early 20th-century books on the physical geography of beaver landscapes

The recent publication of several books on the history and ecology of beavers ( Castor canadensis and Castor fiber) illustrates a renewed interest in the construction activities of beavers and their impacts on landscapes. Over one hundred years ago, two popular books on these same topics were published, In Beaver World and The Romance of the Beaver. These books, their authors, and their legacies can still inform today’s readers interested in beavers, ecosystem engineering, and zoogeomorphology.