Model uncertainties arising due to suppression of target excitations in the description of deuteron scattering and resulting in a modification of the two-body interactions in a three-body system are investigated for several $(d,p)$ reactions serving as indirect tools for studying the astrophysical $(p,\ensuremath{\gamma})$ reactions relevant to $rp$ process. The three-body nature of the deuteron-target potential is treated within the adiabatic distorted-wave approximation (ADWA) which relies on a dominant contribution from the components of the three-body deuteron-target wave function with small $n\text{\ensuremath{-}}p$ separations. This results in a simple prescription for treating the explicit energy dependence of two-body optical potentials in a three-body system requiring nucleon optical potentials to be evaluated at a shifted energy with respect to the standard value of half the deuteron incident energy. In addition, the ADWA allows for leading-order multiple-scattering effects to be estimated, which leads to a simple renormalization of the adiabatic potential's imaginary part by a factor of two. These effects are assessed using both nonlocal and local optical potential systematics for $^{26}\mathrm{Al}$, $^{30}\mathrm{P}$, $^{34}\mathrm{Cl}$, and $^{56}\mathrm{Ni}$ targets at a deuteron incident energy of 12 MeV, which is typical for experiments with radioactive beams in inverse kinematics. The model uncertainties induced by the three-body nature of deuteron-target scattering are found to be within $40%$ both in the main peak of angular distributions and in total $(d,p)$ cross sections. At higher deuteron energies, around 60 MeV, model uncertainties can reach 100% in the total cross sections. A few examples of application to astrophysically interesting proton resonances in $^{27}\mathrm{Si}$ and $^{57}\mathrm{Cu}$ obtained using $(d,p)$ reactions and mirror symmetry are given.
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