A prompt γ-ray neutron activation analysis system has recently been developed at China advanced research reactor (CARR), the 60 MW research reactor in China Institute of Atomic Energy (CIAE). The system is set at the cold neutron beam guide with a thermal equivalent neutron flux at the sample position of 1.0 × 109 n·cm−2·s−1 with the power of 30 MW, and it is mainly composed of a neutron beam collimator, a sample chamber, a beam stopper, neutron and γ-ray shieldings and a detection system. The detection system can realize three modes of measurement: single, Compton suppression, and pair modes. The detection efficiency was calibrated up to 11 MeV using a set of radionuclides and the (n, γ) reactions of N and Cl. Boron, one of the most important elements in high-temperature alloy material studies, was analyzed in this work, as the first pilot experiment of the CARR-PGNAA system. The analytical sensitivity of 2000 cps/mg-B was obtained. The results verified the feasibility of the CARR-PGNAA system to measure boron in high-temperature alloys, and laid a foundation for the accurate quantification of boron in the next step.