The potential structural controls on exhumation across the southern Peruvian Andes are not well understood, in part due to limited structural studies that co-locate with thermochronometric datasets. We integrate these two datasets and evaluate the relative contribution that fault geometry, magnitude, and shortening rate have on predicted cooling ages. Here we present a balanced cross-section constructed using new structural observations. This section, combined with existing thermochronometer data and a thermokinematic model, investigates the drivers of high exhumation and young canyon thermochronometric ages along the deeply incised Marcapata canyon in southern Peru. Together, these approaches constrain the timing and magnitude of exhumation in this portion of the southern Peruvian Andes and provide a mechanism for documenting how the internal architecture changes along strike.The balanced cross-section (oriented N30E) covers the Subandean Zone to the northeast, the Marcapata canyon on the eastern flank of the southern Peruvian Andes, and the Altiplano-Eastern Cordillera boundary to the southwest (13–18° S). Exhumation is constrained by four low-temperature thermochronometer systems, including apatite and zircon (U-Th)/He (AHe and ZHe, respectively) and fission-track (AFT and ZFT, respectively). The youngest AHe (∼1–3 Ma), AFT (∼3–7 Ma), ZHe (∼4–7 Ma), and ZFT (∼14–17 Ma) ages are located in the center and valley bottom of the Marcapata canyon. The thermokinematically modeled cross-section produces cooling ages determined by fault geometry and kinematics. Reset ZFT ages require burial of Ordovician rocks in excess of 5.5 km above the original 6.5 km depositional depth. We find that the ZFT and ZHe ages in the Eastern Cordillera are sensitive to the history and magnitude of burial, age and location of uplift, and canyon incision. Canyon incision is required to reproduce the youngest canyon thermochronometric ages while slow shortening rates from ∼10 Ma to Present are required to reproduce interfluve thermochronometric ages. Shortening is accommodated by basement faults that feed slip up through three different décollement levels before reaching the surface. The proposed stacked basement geometry sets the first-order cooling signal seen in modeled ages. We determined that the total shortening in this section from the Subandean Zone to the Altiplano is 147.5 km, similar to shortening estimates in an adjacent thermo-kinematically modeled section in the San Gabán canyon 50 km to the southeast. Both the ZHe and ZFT ages in the Marcapata section (4–5 and 14 Ma) are noticeably younger than cooling ages from the San Gabán section (16 and 29 Ma). The Marcapata section's higher magnitude of exhumation is due to a repetition of basement thrusts that continues to elevate the Eastern Cordillera while active deformation occurs in the Subandean Zone. The youngest thermochronometric ages in all four systems are co-located with the overlapping basement thrust geometry. This basement geometry, kinematic sequence of deformation, and canyon incision co-conspire to produce the young cooling ages observed in the Eastern Cordillera.
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