This study represents a methodology to determine the falsified documents via a combined method of spectroscopic techniques and chemometrics. The techniques of UV–Vis and FTIR-ATR spectroscopies and principal component analysis methods have been applied to black, blue, and red ballpoint pens available in the Türkiye market. The analysis results of the applied spectroscopic techniques were found to be consistent with each other for the examined eleven ink samples from three different brands, and it was observed that FTIR-ATR spectroscopy had higher discriminative power. A dried sample preparation technique developed for small amounts of samples for FTIR-ATR measurements and the increased the sensitivity of FTIR-ATR technique was associated with this sample preparation method. Statistical techniques showed that the UV–Vis technique proves useful outcomes in distinguishing inks according to their colors, whereas the FTIR-ATR technique is valuable for identifying ink brands. Additional analysis of the sub-brand of black inks and falsified old-dated check sample analysis validated that our methodology has the potential to classify and identify ballpoint inks in forensic applications. Due to the limited sample quantity available for analysis in real samples, only FTIR-ATR analysis was possible, and the results demonstrated that document forgery could be detected from small parts of samples in the document. When we look at the overall outcome of this study, a comprehensive methodology enriched with statistical calculations has been proposed that can be applied even in a laboratory with limited resources, having only UV–Vis and FTIR-ATR capabilities.